Rw2G041000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0005514
Physical Location & Seq
Reverse (-)
66818648 .. 66818884
237 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G041000.1

Sequence Viewer

Length: 237 bp
ATGAAGAACAGTGGAAACGGGAAGAGTCACAAAGGAAATGTGAAAGAGGATCAGGTGAAGAAGGACAGGAAATCAGGATCAGGCATGAATGGATCGCCCAAAAAAGGTGTCCATGGCGGCAAGTTCACCTGGGCCAATGATCTGGGCTACTCTACAGCCGAGATGGGTTTTCAGAAGGAAGTCATTGAAGCCAAGGATCCAAACTTTGAAGACACAGTCGAGATCCCAAGCGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

78

Amino Acids

8.44

Weight (kDa)

8.93

Isoelectric Point (pI)

12.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 117
AclWI GGATC 6 cut(s) 57, 85, 100, 191, 204, 217
AfiI CCNNNNNNNGG 1 cut(s) 104
AgsI TTSAA 2 cut(s) 188, 209
AjnI CCWGG 1 cut(s) 128
AlwI GGATC 6 cut(s) 57, 85, 100, 191, 204, 217
AoxI GGCC 1 cut(s) 132
ArsI GACNNNNNNTTYG 2 cut(s) 93, 125
AspS9I GGNCC 1 cut(s) 132
AsuHPI GGTGA 2 cut(s) 67, 118
BamHI GGATCC 1 cut(s) 196
BbsI GAAGAC 1 cut(s) 216
BccI CCATC 1 cut(s) 157
BciT130I CCWGG 1 cut(s) 130
BfmI CTRYAG 1 cut(s) 153
BisI GCNGC 1 cut(s) 118
BlsI GCNGC 1 cut(s) 119
Bme1390I CCNGG 1 cut(s) 130
BmgT120I GGNCC 1 cut(s) 132
BmiI GGNNCC 1 cut(s) 198
BmrFI CCNGG 1 cut(s) 130
BpiI GAAGAC 1 cut(s) 216
BsaJI CCNNGG 3 cut(s) 112, 129, 192
Bsc4I CCNNNNNNNGG 1 cut(s) 104
BseBI CCWGG 1 cut(s) 130
BseDI CCNNGG 3 cut(s) 112, 129, 192
BseLI CCNNNNNNNGG 1 cut(s) 104
BshFI GGCC 1 cut(s) 134
BslI CCNNNNNNNGG 1 cut(s) 104
BsnI GGCC 1 cut(s) 134
Bsp143I GATC 6 cut(s) 49, 77, 92, 139, 196, 222
Bsp19I CCATGG 1 cut(s) 112
BspACI CCGC 1 cut(s) 117
BspANI GGCC 1 cut(s) 134
BspLI GGNNCC 1 cut(s) 198
BspPI GGATC 6 cut(s) 57, 85, 100, 191, 204, 217
BssECI CCNNGG 3 cut(s) 112, 129, 192
BssMI GATC 6 cut(s) 49, 77, 92, 139, 196, 222
BssT1I CCWWGG 2 cut(s) 112, 192
Bst2UI CCWGG 1 cut(s) 130
Bst4CI ACNGT 2 cut(s) 11, 217
Bst6I CTCTTC 1 cut(s) 17
BstDSI CCRYGG 1 cut(s) 112
BstKTI GATC 6 cut(s) 52, 80, 95, 142, 199, 225
BstMBI GATC 6 cut(s) 49, 77, 92, 139, 196, 222
BstNI CCWGG 1 cut(s) 130
BstSCI CCNGG 1 cut(s) 128
BstSFI CTRYAG 1 cut(s) 153
BstV2I GAAGAC 1 cut(s) 216
BstX2I RGATCY 2 cut(s) 196, 222
BstXI CCANNNNNNTGG 1 cut(s) 142
BstYI RGATCY 2 cut(s) 196, 222
BsuRI GGCC 1 cut(s) 134
BtgI CCRYGG 1 cut(s) 112
BtsIMutI CAGTG 1 cut(s) 16
Cfr13I GGNCC 1 cut(s) 132
CseI GACGC 1 cut(s) 220
CviAII CATG 2 cut(s) 85, 113
CviJI RGCY 4 cut(s) 134, 147, 158, 191
CviKI_1 RGCY 4 cut(s) 134, 147, 158, 191
DpnI GATC 6 cut(s) 51, 79, 94, 141, 198, 224
DpnII GATC 6 cut(s) 49, 77, 92, 139, 196, 222
Eam1104I CTCTTC 1 cut(s) 17
EarI CTCTTC 1 cut(s) 17
Eco130I CCWWGG 2 cut(s) 112, 192
EcoRII CCWGG 1 cut(s) 128
EcoT14I CCWWGG 2 cut(s) 112, 192
ErhI CCWWGG 2 cut(s) 112, 192
FaeI CATG 2 cut(s) 88, 116
FaiI YATR 2 cut(s) 86, 114
FatI CATG 2 cut(s) 84, 112
Fnu4HI GCNGC 1 cut(s) 118
Fsp4HI GCNGC 1 cut(s) 118
GluI GCNGC 1 cut(s) 118
HaeIII GGCC 1 cut(s) 134
HgaI GACGC 1 cut(s) 220
Hin1II CATG 2 cut(s) 88, 116
HinfI GANTC 1 cut(s) 25
HphI GGTGA 2 cut(s) 67, 118
Hpy166II GTNNAC 1 cut(s) 126
Hpy188I TCNGA 2 cut(s) 174, 236
Hpy188III TCNNGA 2 cut(s) 75, 220
Hpy8I GTNNAC 1 cut(s) 126
HpyAV CCTTC 2 cut(s) 55, 169
HpyCH4III ACNGT 2 cut(s) 11, 217
Hsp92II CATG 2 cut(s) 88, 116
Kzo9I GATC 6 cut(s) 49, 77, 92, 139, 196, 222
LpnPI CCDG 7 cut(s) 38, 52, 60, 66, 115, 128, 142
MaeIII GTNAC 1 cut(s) 26
MalI GATC 6 cut(s) 51, 79, 94, 141, 198, 224
MboI GATC 6 cut(s) 49, 77, 92, 139, 196, 222
MboII GAAGA 4 cut(s) 16, 34, 70, 221
MflI RGATCY 2 cut(s) 196, 222
MlyI GAGTC 1 cut(s) 34
MnlI CCTC 1 cut(s) 40
MspR9I CCNGG 1 cut(s) 130
MvaI CCWGG 1 cut(s) 130
NcoI CCATGG 1 cut(s) 112
NdeII GATC 6 cut(s) 49, 77, 92, 139, 196, 222
NlaIII CATG 2 cut(s) 88, 116
NlaIV GGNNCC 1 cut(s) 198
NmeAIII GCCGAG 1 cut(s) 184
NmuCI GTSAC 1 cut(s) 26
PflFI GACNNNGTC 1 cut(s) 215
PkrI GCNGC 1 cut(s) 119
PleI GAGTC 1 cut(s) 33
PpsI GAGTC 1 cut(s) 33
Psp6I CCWGG 1 cut(s) 128
PspGI CCWGG 1 cut(s) 128
PspN4I GGNNCC 1 cut(s) 198
PspPI GGNCC 1 cut(s) 132
PsuI RGATCY 2 cut(s) 196, 222
PsyI GACNNNGTC 1 cut(s) 215
SatI GCNGC 1 cut(s) 118
Sau3AI GATC 6 cut(s) 49, 77, 92, 139, 196, 222
Sau96I GGNCC 1 cut(s) 132
SchI GAGTC 1 cut(s) 34
ScrFI CCNGG 1 cut(s) 130
SetI ASST 3 cut(s) 57, 109, 131
SfcI CTRYAG 1 cut(s) 153
SsiI CCGC 1 cut(s) 117
StyD4I CCNGG 1 cut(s) 128
StyI CCWWGG 2 cut(s) 112, 192
TaaI ACNGT 2 cut(s) 11, 217
TaqI TCGA 1 cut(s) 219
TauI GCSGC 1 cut(s) 120
TscAI CASTG 1 cut(s) 16
TseFI GTSAC 1 cut(s) 26
Tsp45I GTSAC 1 cut(s) 26
TspDTI ATGAA 2 cut(s) 17, 101
TspRI CASTG 1 cut(s) 16
Tth111I GACNNNGTC 1 cut(s) 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.