Rorug02G0487900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0005514
Physical Location & Seq
Reverse (-)
61764819 .. 61766766
1948 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0487900.1

Sequence Viewer

Length: 375 bp
ATGGAGAGTCCAAAGAAGAATGTGGCAGGATATCGATGGGAAAAAGCCTTGATATTGGAGTTTGTTAGAGATGGTGACAAATCTGTGGTAGAGTTGATGGATACTGGGAAACAGCTTCTAGGGAGGAAGCCTTTTCTTCCGGGTGTTCAATATCTTTTGGATATGGTGCAGGTTGAGGGGACATTTGGTGATGGGACCAAGTTAATCACCATTCATGATCCAATTTCTTGTGATAATGGAGATCCGGAACTAGCTTTAAGGAACTCTTTTCTTCCTGAGTTGTTAAAGATAATGATATATGGGATTTCTTCTCATCCACTTGCTACGAGGGAAGCGTGCAAATATGTTGAGGAAAAGTTAGCCGTGAAGGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

124

Amino Acids

13.91

Weight (kDa)

5.45

Isoelectric Point (pI)

32.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Urease_gamma PF00547 17 - 75 3.4e-18 Urease, gamma subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 160
AccIII TCCGGA 1 cut(s) 244
AclWI GGATC 2 cut(s) 212, 236
AgsI TTSAA 1 cut(s) 149
AluBI AGCT 2 cut(s) 115, 254
AluI AGCT 2 cut(s) 115, 254
AlwI GGATC 2 cut(s) 212, 236
Aor13HI TCCGGA 1 cut(s) 244
AspS9I GGNCC 1 cut(s) 195
AsuC2I CCSGG 1 cut(s) 141
AsuHPI GGTGA 3 cut(s) 86, 199, 200
AvaII GGWCC 1 cut(s) 195
BccI CCATC 4 cut(s) 30, 65, 91, 185
BceAI ACGGC 1 cut(s) 347
BciVI GTATCC 1 cut(s) 94
BcnI CCSGG 1 cut(s) 141
BfaI CTAG 2 cut(s) 119, 251
BfuAI ACCTGC 1 cut(s) 160
BfuI GTATCC 1 cut(s) 94
Bme1390I CCNGG 1 cut(s) 141
Bme18I GGWCC 1 cut(s) 195
BmgT120I GGNCC 1 cut(s) 195
BmiI GGNNCC 1 cut(s) 196
BmrFI CCNGG 1 cut(s) 141
BmrI ACTGGG 1 cut(s) 114
BmuI ACTGGG 1 cut(s) 114
BpuMI CCSGG 1 cut(s) 141
Bsa29I ATCGAT 1 cut(s) 34
BsaWI WCCGGW 1 cut(s) 244
Bse1I ACTGG 1 cut(s) 109
BseAI TCCGGA 1 cut(s) 244
BseCI ATCGAT 1 cut(s) 34
BseGI GGATG 1 cut(s) 313
BseMII CTCAG 1 cut(s) 267
BseNI ACTGG 1 cut(s) 109
BsgI GTGCAG 1 cut(s) 188
BshVI ATCGAT 1 cut(s) 34
BsiSI CCGG 2 cut(s) 140, 245
BslFI GGGAC 2 cut(s) 193, 208
BsmFI GGGAC 2 cut(s) 193, 208
Bsp13I TCCGGA 1 cut(s) 244
Bsp143I GATC 2 cut(s) 217, 241
BspCNI CTCAG 1 cut(s) 268
BspDI ATCGAT 1 cut(s) 34
BspEI TCCGGA 1 cut(s) 244
BspHI TCATGA 1 cut(s) 214
BspLI GGNNCC 1 cut(s) 196
BspMI ACCTGC 1 cut(s) 160
BspPI GGATC 2 cut(s) 212, 236
BsrI ACTGG 1 cut(s) 109
BssMI GATC 2 cut(s) 217, 241
BstC8I GCNNGC 1 cut(s) 337
BstDEI CTNAG 1 cut(s) 276
BstF5I GGATG 1 cut(s) 313
BstKTI GATC 2 cut(s) 220, 244
BstMBI GATC 2 cut(s) 217, 241
BstSCI CCNGG 1 cut(s) 139
BstX2I RGATCY 1 cut(s) 241
BstYI RGATCY 1 cut(s) 241
Bsu15I ATCGAT 1 cut(s) 34
BsuI GTATCC 1 cut(s) 94
BsuTUI ATCGAT 1 cut(s) 34
BtsCI GGATG 1 cut(s) 313
BveI ACCTGC 1 cut(s) 160
Cac8I GCNNGC 1 cut(s) 337
CciI TCATGA 1 cut(s) 214
Cfr13I GGNCC 1 cut(s) 195
ClaI ATCGAT 1 cut(s) 34
CviAII CATG 1 cut(s) 215
CviJI RGCY 5 cut(s) 47, 115, 130, 254, 362
CviKI_1 RGCY 5 cut(s) 47, 115, 130, 254, 362
DdeI CTNAG 1 cut(s) 276
DpnI GATC 2 cut(s) 219, 243
DpnII GATC 2 cut(s) 217, 241
Eco32I GATATC 1 cut(s) 32
Eco47I GGWCC 1 cut(s) 195
EcoRV GATATC 1 cut(s) 32
FaeI CATG 1 cut(s) 218
FaiI YATR 5 cut(s) 164, 216, 298, 300, 345
FalI AAGNNNNNCTT 2 cut(s) 250, 282
FaqI GGGAC 2 cut(s) 193, 208
FatI CATG 1 cut(s) 214
FokI GGATG 1 cut(s) 300
FspBI CTAG 2 cut(s) 119, 251
HapII CCGG 2 cut(s) 140, 245
Hin1II CATG 1 cut(s) 218
HinfI GANTC 1 cut(s) 7
HpaII CCGG 2 cut(s) 140, 245
HphI GGTGA 3 cut(s) 86, 199, 200
Hpy188III TCNNGA 3 cut(s) 215, 245, 275
HpyAV CCTTC 1 cut(s) 361
HpyCH4V TGCA 2 cut(s) 169, 339
HpyF3I CTNAG 1 cut(s) 276
Hsp92II CATG 1 cut(s) 218
Kpn2I TCCGGA 1 cut(s) 244
Kzo9I GATC 2 cut(s) 217, 241
LpnPI CCDG 6 cut(s) 12, 90, 153, 155, 258, 288
MaeI CTAG 2 cut(s) 119, 251
MaeIII GTNAC 1 cut(s) 74
MalI GATC 2 cut(s) 219, 243
MboI GATC 2 cut(s) 217, 241
MboII GAAGA 4 cut(s) 28, 128, 263, 300
MflI RGATCY 1 cut(s) 241
MluCI AATT 1 cut(s) 222
MlyI GAGTC 1 cut(s) 16
MnlI CCTC 4 cut(s) 117, 169, 321, 343
MroI TCCGGA 1 cut(s) 244
MseI TTAA 3 cut(s) 203, 257, 284
MspI CCGG 2 cut(s) 140, 245
MspR9I CCNGG 1 cut(s) 141
NciI CCSGG 1 cut(s) 141
NdeII GATC 2 cut(s) 217, 241
NlaIII CATG 1 cut(s) 218
NlaIV GGNNCC 1 cut(s) 196
NmuCI GTSAC 1 cut(s) 74
PagI TCATGA 1 cut(s) 214
PcsI WCGNNNNNNNCGW 1 cut(s) 332
PleI GAGTC 1 cut(s) 15
PpsI GAGTC 1 cut(s) 15
PspN4I GGNNCC 1 cut(s) 196
PspPI GGNCC 1 cut(s) 195
PsuI RGATCY 1 cut(s) 241
SaqAI TTAA 3 cut(s) 203, 257, 284
Sau3AI GATC 2 cut(s) 217, 241
Sau96I GGNCC 1 cut(s) 195
SchI GAGTC 1 cut(s) 16
ScrFI CCNGG 1 cut(s) 141
SetI ASST 3 cut(s) 117, 174, 256
SinI GGWCC 1 cut(s) 195
Sse9I AATT 1 cut(s) 222
SspMI CTAG 2 cut(s) 119, 251
StyD4I CCNGG 1 cut(s) 139
TaqI TCGA 1 cut(s) 34
TasI AATT 1 cut(s) 222
Tru1I TTAA 3 cut(s) 203, 257, 284
Tru9I TTAA 3 cut(s) 203, 257, 284
TseFI GTSAC 1 cut(s) 74
Tsp45I GTSAC 1 cut(s) 74
TspDTI ATGAA 1 cut(s) 203
VpaK11BI GGWCC 1 cut(s) 195
XspI CTAG 2 cut(s) 119, 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.