Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0005514

Physical Location & Seq

Genomic Coordinates Reverse (-)

72212786 .. 72214952

Gene Structure 2167 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG499500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGGTGATAGGGAAGTCTCCAGTTGTCAGCAGGAATTATCTTGATCTATTATGGTTCCAAGATTCAGTTACAGAGAAGAAGAAGAAGAAGATGATGAAGAACAGTGGAAACGGGAAGAGTCACAAAGGAAATGTGAAAGAGGATCAGGTGAAGAAGGACATGAAATCAGGATTGGGCATGAATGGATCGCCCAAGAAAGGTGTCCATGGCGGCAAGTTCACCCGGGCCAATGATCTGGGCTACTCTACAGCTGAGATGGGTTTTCAGAAGGAAGTCATTGACGCTAAGGATCCAAACTTTGAAGACACAGTCGAGATCCCAAGCGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

109

Amino Acids

12.05

Weight (kDa)

9.52

Isoelectric Point (pI)

28.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005514)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06390
prunus_persica	Prupe.7G218200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0092131
rosa_laevigata	RLG00000016276 RLG00000017332 RLG00000026233
rosa_multiflora	Rmu_sc0000218.1_g000035 Rmu_sc0002316.1_g000052 Rmu_sc0013552.1_g000003 Rmu_sc0039110.1_g000001
rosa_roxburghii	Rroxscaffold_2G00149470
rosa_rugosa	Rorug02G0022900 Rorug02G0202800 Rorug02G0487900 Rorug04G0137700 Rorug04G0224400 Rorug05G0380400
rosa_samantha	Rh1DG169300 Rh2AG068700 Rh2AG499500 Rh2BG068000 Rh2DG281100 Rh3AG180300 Rh3BG206500 Rh3CG203600 Rh3CG221900
rosa_wichuraiana	Rw2G005270 Rw2G041000 Rw5G022820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	210
AclWI	GGATC	5 cut(s)	150, 193, 284, 297, 310
AfiI	CCNNNNNNNGG	1 cut(s)	197
AgsI	TTSAA	1 cut(s)	302
AjuI	GAANNNNNNNTTGG	2 cut(s)	155, 187
AluBI	AGCT	1 cut(s)	251
AluI	AGCT	1 cut(s)	251
Alw26I	GTCTC	1 cut(s)	21
AlwI	GGATC	5 cut(s)	150, 193, 284, 297, 310
Ama87I	CYCGRG	1 cut(s)	222
AoxI	GGCC	1 cut(s)	225
AspS9I	GGNCC	1 cut(s)	225
AsuC2I	CCSGG	2 cut(s)	223, 224
AsuHPI	GGTGA	3 cut(s)	16, 160, 211
AvaI	CYCGRG	1 cut(s)	222
BamHI	GGATCC	1 cut(s)	289
BbsI	GAAGAC	1 cut(s)	309
BccI	CCATC	1 cut(s)	250
BcnI	CCSGG	2 cut(s)	223, 224
BcoDI	GTCTC	1 cut(s)	21
BfmI	CTRYAG	1 cut(s)	246
BisI	GCNGC	1 cut(s)	211
BlsI	GCNGC	1 cut(s)	212
Bme1390I	CCNGG	2 cut(s)	223, 224
BmeT110I	CYCGRG	1 cut(s)	222
BmgT120I	GGNCC	1 cut(s)	225
BmiI	GGNNCC	2 cut(s)	56, 291
BmrFI	CCNGG	2 cut(s)	223, 224
BpiI	GAAGAC	1 cut(s)	309
Bpu10I	CCTNAGC	1 cut(s)	285
BpuMI	CCSGG	2 cut(s)	223, 224
BsaJI	CCNNGG	2 cut(s)	205, 222
Bsc4I	CCNNNNNNNGG	1 cut(s)	197
Bse1I	ACTGG	1 cut(s)	20
BseDI	CCNNGG	2 cut(s)	205, 222
BseLI	CCNNNNNNNGG	1 cut(s)	197
BseMII	CTCAG	1 cut(s)	243
BseNI	ACTGG	1 cut(s)	20
BshFI	GGCC	1 cut(s)	227
BsiHKCI	CYCGRG	1 cut(s)	222
BsiSI	CCGG	1 cut(s)	223
BslI	CCNNNNNNNGG	1 cut(s)	197
BsmAI	GTCTC	1 cut(s)	21
BsnI	GGCC	1 cut(s)	227
BsoBI	CYCGRG	1 cut(s)	222
Bsp143I	GATC	6 cut(s)	43, 142, 185, 232, 289, 315
Bsp19I	CCATGG	1 cut(s)	205
BspACI	CCGC	1 cut(s)	210
BspANI	GGCC	1 cut(s)	227
BspCNI	CTCAG	1 cut(s)	244
BspLI	GGNNCC	2 cut(s)	56, 291
BspPI	GGATC	5 cut(s)	150, 193, 284, 297, 310
BsrI	ACTGG	1 cut(s)	20
BssECI	CCNNGG	2 cut(s)	205, 222
BssMI	GATC	6 cut(s)	43, 142, 185, 232, 289, 315
BssT1I	CCWWGG	1 cut(s)	205
Bst4CI	ACNGT	2 cut(s)	104, 310
Bst6I	CTCTTC	1 cut(s)	110
BstDEI	CTNAG	2 cut(s)	252, 285
BstDSI	CCRYGG	1 cut(s)	205
BstKTI	GATC	6 cut(s)	46, 145, 188, 235, 292, 318
BstMAI	GTCTC	1 cut(s)	21
BstMBI	GATC	6 cut(s)	43, 142, 185, 232, 289, 315
BstSCI	CCNGG	2 cut(s)	221, 222
BstSFI	CTRYAG	1 cut(s)	246
BstV2I	GAAGAC	1 cut(s)	309
BstX2I	RGATCY	2 cut(s)	289, 315
BstXI	CCANNNNNNTGG	1 cut(s)	235
BstYI	RGATCY	2 cut(s)	289, 315
BsuRI	GGCC	1 cut(s)	227
BtgI	CCRYGG	1 cut(s)	205
BtsIMutI	CAGTG	1 cut(s)	109
Cfr13I	GGNCC	1 cut(s)	225
Cfr9I	CCCGGG	1 cut(s)	222
CseI	GACGC	1 cut(s)	290
CviAII	CATG	3 cut(s)	160, 178, 206
CviJI	RGCY	3 cut(s)	227, 240, 251
CviKI_1	RGCY	3 cut(s)	227, 240, 251
DdeI	CTNAG	2 cut(s)	252, 285
DpnI	GATC	6 cut(s)	45, 144, 187, 234, 291, 317
DpnII	GATC	6 cut(s)	43, 142, 185, 232, 289, 315
Eam1104I	CTCTTC	1 cut(s)	110
EarI	CTCTTC	1 cut(s)	110
Eco130I	CCWWGG	1 cut(s)	205
Eco88I	CYCGRG	1 cut(s)	222
EcoT14I	CCWWGG	1 cut(s)	205
ErhI	CCWWGG	1 cut(s)	205
FaeI	CATG	3 cut(s)	163, 181, 209
FaiI	YATR	4 cut(s)	52, 161, 179, 207
FatI	CATG	3 cut(s)	159, 177, 205
Fnu4HI	GCNGC	1 cut(s)	211
Fsp4HI	GCNGC	1 cut(s)	211
GluI	GCNGC	1 cut(s)	211
HaeIII	GGCC	1 cut(s)	227
HapII	CCGG	1 cut(s)	223
HgaI	GACGC	1 cut(s)	290
Hin1II	CATG	3 cut(s)	163, 181, 209
HinfI	GANTC	2 cut(s)	62, 118
HpaII	CCGG	1 cut(s)	223
HphI	GGTGA	3 cut(s)	16, 160, 211
Hpy166II	GTNNAC	1 cut(s)	219
Hpy188I	TCNGA	1 cut(s)	267
Hpy188III	TCNNGA	3 cut(s)	41, 168, 313
Hpy8I	GTNNAC	1 cut(s)	219
HpyAV	CCTTC	2 cut(s)	148, 262
HpyCH4III	ACNGT	2 cut(s)	104, 310
HpyF3I	CTNAG	2 cut(s)	252, 285
Hsp92II	CATG	3 cut(s)	163, 181, 209
Kzo9I	GATC	6 cut(s)	43, 142, 185, 232, 289, 315
LpnPI	CCDG	6 cut(s)	16, 33, 131, 153, 221, 236
MaeIII	GTNAC	2 cut(s)	67, 119
MalI	GATC	6 cut(s)	45, 144, 187, 234, 291, 317
MboI	GATC	6 cut(s)	43, 142, 185, 232, 289, 315
MboII	GAAGA	9 cut(s)	88, 91, 94, 97, 100, 109, 127, 163, 314
MflI	RGATCY	2 cut(s)	289, 315
MluCI	AATT	1 cut(s)	34
MlyI	GAGTC	1 cut(s)	127
MnlI	CCTC	1 cut(s)	133
MspA1I	CMGCKG	1 cut(s)	251
MspI	CCGG	1 cut(s)	223
MspR9I	CCNGG	2 cut(s)	223, 224
NciI	CCSGG	2 cut(s)	223, 224
NcoI	CCATGG	1 cut(s)	205
NdeII	GATC	6 cut(s)	43, 142, 185, 232, 289, 315
NlaIII	CATG	3 cut(s)	163, 181, 209
NlaIV	GGNNCC	2 cut(s)	56, 291
NmuCI	GTSAC	1 cut(s)	119
PfeI	GAWTC	1 cut(s)	62
PflFI	GACNNNGTC	1 cut(s)	308
PkrI	GCNGC	1 cut(s)	212
PleI	GAGTC	1 cut(s)	126
PpsI	GAGTC	1 cut(s)	126
PspN4I	GGNNCC	2 cut(s)	56, 291
PspPI	GGNCC	1 cut(s)	225
PsuI	RGATCY	2 cut(s)	289, 315
PsyI	GACNNNGTC	1 cut(s)	308
PvuII	CAGCTG	1 cut(s)	251
SatI	GCNGC	1 cut(s)	211
Sau3AI	GATC	6 cut(s)	43, 142, 185, 232, 289, 315
Sau96I	GGNCC	1 cut(s)	225
SchI	GAGTC	1 cut(s)	127
ScrFI	CCNGG	2 cut(s)	223, 224
SetI	ASST	3 cut(s)	150, 202, 253
SfcI	CTRYAG	1 cut(s)	246
SmaI	CCCGGG	1 cut(s)	224
Sse9I	AATT	1 cut(s)	34
SsiI	CCGC	1 cut(s)	210
StyD4I	CCNGG	2 cut(s)	221, 222
StyI	CCWWGG	1 cut(s)	205
TaaI	ACNGT	2 cut(s)	104, 310
TaqI	TCGA	1 cut(s)	312
TasI	AATT	1 cut(s)	34
TauI	GCSGC	1 cut(s)	213
TfiI	GAWTC	1 cut(s)	62
TscAI	CASTG	1 cut(s)	109
TseFI	GTSAC	1 cut(s)	119
Tsp45I	GTSAC	1 cut(s)	119
TspDTI	ATGAA	3 cut(s)	110, 176, 194
TspMI	CCCGGG	1 cut(s)	222
TspRI	CASTG	1 cut(s)	109
Tth111I	GACNNNGTC	1 cut(s)	308
XmaI	CCCGGG	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.