Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0005514

Physical Location & Seq

Genomic Coordinates Forward (+)

38542579 .. 38542806

Gene Structure 228 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0224400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 195 bp

ATGCGCGGCTGGGCGAGGTCGAGCTCGTGGACCTTGGCGCTGACGTGGTCGGCGAGGTCGCAGGTGGAGGAGACGTTGGAGAGGACGTGGTCGGCGTTGGACTTGACGGTGTCGAGGACCTGGGAGGATTTCTGGAGATTGGAGAGGTGCTTGTCGAGGTCGGAGCGCTGGGAGAGAGGAGGTGGTCGAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

64

Amino Acids

7.63

Weight (kDa)

9.96

Isoelectric Point (pI)

55.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005514)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06390
prunus_persica	Prupe.7G218200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0092131
rosa_laevigata	RLG00000016276 RLG00000017332 RLG00000026233
rosa_multiflora	Rmu_sc0000218.1_g000035 Rmu_sc0002316.1_g000052 Rmu_sc0013552.1_g000003 Rmu_sc0039110.1_g000001
rosa_roxburghii	Rroxscaffold_2G00149470
rosa_rugosa	Rorug02G0022900 Rorug02G0202800 Rorug02G0487900 Rorug04G0137700 Rorug04G0224400 Rorug05G0380400
rosa_samantha	Rh1DG169300 Rh2AG068700 Rh2AG499500 Rh2BG068000 Rh2DG281100 Rh3AG180300 Rh3BG206500 Rh3CG203600 Rh3CG221900
rosa_wichuraiana	Rw2G005270 Rw2G041000 Rw5G022820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	52
Acc36I	ACCTGC	1 cut(s)	52
AccII	CGCG	1 cut(s)	6
AciI	CCGC	1 cut(s)	6
AfeI	AGCGCT	1 cut(s)	167
AjiI	CACGTC	2 cut(s)	45, 87
AjnI	CCWGG	1 cut(s)	119
AluBI	AGCT	1 cut(s)	24
AluI	AGCT	1 cut(s)	24
Alw21I	GWGCWC	1 cut(s)	26
Alw26I	GTCTC	1 cut(s)	65
Aor51HI	AGCGCT	1 cut(s)	167
AspLEI	GCGC	3 cut(s)	6, 40, 168
AspS9I	GGNCC	2 cut(s)	30, 117
AvaII	GGWCC	2 cut(s)	30, 117
BanII	GRGCYC	1 cut(s)	26
BauI	CACGAG	1 cut(s)	25
Bbv12I	GWGCWC	1 cut(s)	26
BciT130I	CCWGG	1 cut(s)	121
BcoDI	GTCTC	1 cut(s)	65
BfoI	RGCGCY	2 cut(s)	41, 169
BfuAI	ACCTGC	1 cut(s)	52
BisI	GCNGC	1 cut(s)	7
BlsI	GCNGC	1 cut(s)	8
Bme1390I	CCNGG	1 cut(s)	121
Bme18I	GGWCC	2 cut(s)	30, 117
BmgBI	CACGTC	2 cut(s)	45, 87
BmgT120I	GGNCC	2 cut(s)	30, 117
BmrFI	CCNGG	1 cut(s)	121
BpmI	CTGGAG	1 cut(s)	154
BsaJI	CCNNGG	2 cut(s)	33, 120
BsaXI	ACNNNNNCTCC	4 cut(s)	59, 71, 89, 101
BseBI	CCWGG	1 cut(s)	121
BseDI	CCNNGG	2 cut(s)	33, 120
BseRI	GAGGAG	2 cut(s)	83, 192
BseYI	CCCAGC	2 cut(s)	9, 168
Bsh1236I	CGCG	1 cut(s)	6
BsiHKAI	GWGCWC	1 cut(s)	26
BsmAI	GTCTC	1 cut(s)	65
BsmBI	CGTCTC	1 cut(s)	65
Bsp1286I	GDGCHC	1 cut(s)	26
BspACI	CCGC	1 cut(s)	6
BspFNI	CGCG	1 cut(s)	6
BspMI	ACCTGC	1 cut(s)	52
BssECI	CCNNGG	2 cut(s)	33, 120
BssSI	CACGAG	1 cut(s)	25
BssT1I	CCWWGG	1 cut(s)	33
Bst2BI	CACGAG	1 cut(s)	25
Bst2UI	CCWGG	1 cut(s)	121
Bst4CI	ACNGT	1 cut(s)	109
BstFNI	CGCG	1 cut(s)	6
BstH2I	RGCGCY	2 cut(s)	41, 169
BstHHI	GCGC	3 cut(s)	6, 40, 168
BstMAI	GTCTC	1 cut(s)	65
BstNI	CCWGG	1 cut(s)	121
BstSCI	CCNGG	1 cut(s)	119
BstUI	CGCG	1 cut(s)	6
BtrI	CACGTC	2 cut(s)	45, 87
BveI	ACCTGC	1 cut(s)	52
CfoI	GCGC	3 cut(s)	6, 40, 168
Cfr13I	GGNCC	2 cut(s)	30, 117
CviJI	RGCY	2 cut(s)	9, 24
CviKI_1	RGCY	2 cut(s)	9, 24
Ecl136II	GAGCTC	1 cut(s)	24
Eco130I	CCWWGG	1 cut(s)	33
Eco24I	GRGCYC	1 cut(s)	26
Eco47I	GGWCC	2 cut(s)	30, 117
Eco47III	AGCGCT	1 cut(s)	167
Eco53kI	GAGCTC	1 cut(s)	24
EcoICRI	GAGCTC	1 cut(s)	24
EcoO109I	RGGNCCY	1 cut(s)	117
EcoRII	CCWGG	1 cut(s)	119
EcoT14I	CCWWGG	1 cut(s)	33
EcoT38I	GRGCYC	1 cut(s)	26
ErhI	CCWWGG	1 cut(s)	33
Esp3I	CGTCTC	1 cut(s)	65
Fnu4HI	GCNGC	1 cut(s)	7
FriOI	GRGCYC	1 cut(s)	26
Fsp4HI	GCNGC	1 cut(s)	7
GlaI	GCGC	3 cut(s)	5, 39, 167
GluI	GCNGC	1 cut(s)	7
GsaI	CCCAGC	2 cut(s)	13, 172
GsuI	CTGGAG	1 cut(s)	154
HaeII	RGCGCY	2 cut(s)	41, 169
HhaI	GCGC	3 cut(s)	6, 40, 168
Hin6I	GCGC	3 cut(s)	4, 38, 166
HinP1I	GCGC	3 cut(s)	4, 38, 166
Hpy166II	GTNNAC	1 cut(s)	30
Hpy188I	TCNGA	1 cut(s)	163
Hpy188III	TCNNGA	1 cut(s)	133
Hpy8I	GTNNAC	1 cut(s)	30
HpyCH4III	ACNGT	1 cut(s)	109
HpyCH4IV	ACGT	3 cut(s)	44, 74, 86
HpySE526I	ACGT	3 cut(s)	44, 74, 86
HspAI	GCGC	3 cut(s)	4, 38, 166
LmnI	GCTCC	1 cut(s)	163
LpnPI	CCDG	5 cut(s)	47, 106, 118, 133, 154
MaeII	ACGT	3 cut(s)	44, 74, 86
MhlI	GDGCHC	1 cut(s)	26
MmeI	TCCRAC	3 cut(s)	57, 78, 141
MspR9I	CCNGG	1 cut(s)	121
MvaI	CCWGG	1 cut(s)	121
MvnI	CGCG	1 cut(s)	6
PaqCI	CACCTGC	1 cut(s)	52
PcsI	WCGNNNNNNNCGW	2 cut(s)	50, 92
PflFI	GACNNNGTC	3 cut(s)	46, 88, 109
PkrI	GCNGC	1 cut(s)	8
PpuMI	RGGWCCY	1 cut(s)	117
Psp124BI	GAGCTC	1 cut(s)	26
Psp5II	RGGWCCY	1 cut(s)	117
Psp6I	CCWGG	1 cut(s)	119
PspFI	CCCAGC	2 cut(s)	9, 168
PspGI	CCWGG	1 cut(s)	119
PspPI	GGNCC	2 cut(s)	30, 117
PspPPI	RGGWCCY	1 cut(s)	117
PsyI	GACNNNGTC	3 cut(s)	46, 88, 109
SacI	GAGCTC	1 cut(s)	26
SatI	GCNGC	1 cut(s)	7
Sau96I	GGNCC	2 cut(s)	30, 117
ScrFI	CCNGG	1 cut(s)	121
SduI	GDGCHC	1 cut(s)	26
SinI	GGWCC	2 cut(s)	30, 117
SsiI	CCGC	1 cut(s)	6
SstI	GAGCTC	1 cut(s)	26
StyD4I	CCNGG	1 cut(s)	119
StyI	CCWWGG	1 cut(s)	33
TaaI	ACNGT	1 cut(s)	109
TaiI	ACGT	3 cut(s)	47, 77, 89
TaqI	TCGA	4 cut(s)	20, 113, 155, 187
TauI	GCSGC	1 cut(s)	9
Tth111I	GACNNNGTC	3 cut(s)	46, 88, 109
VpaK11BI	GGWCC	2 cut(s)	30, 117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.