Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0039110.1

Orthogroup ID

OG0005514

Physical Location & Seq

Genomic Coordinates Reverse (-)

371 .. 843

Gene Structure 473 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0039110.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

atggtagttggagtgatttcggccgccaccgaaattccttttcatggtggctatctgggcttcccttggttgaattctgaccctagttcatatttaaaaatggttggagagaagaagaagaagatgatgatgatgaagaatagtggaaacgggaagattcacaaaggaaatgagagagagaatcaggtgaagaaggacaagaaatcaggatcgggcatgaatggatcgcccaagaaaggtggccatggcggcaagctcacctgggctggtgatctgggctactctatagctgagatgggttttcagaaggaagtcatcgactctaaggatccaaactttgaagacacagttaagatcccaagcgtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

122

Amino Acids

13.24

Weight (kDa)

9.49

Isoelectric Point (pI)

16.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005514)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06390
prunus_persica	Prupe.7G218200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0092131
rosa_laevigata	RLG00000016276 RLG00000017332 RLG00000026233
rosa_multiflora	Rmu_sc0000218.1_g000035 Rmu_sc0002316.1_g000052 Rmu_sc0013552.1_g000003 Rmu_sc0039110.1_g000001
rosa_roxburghii	Rroxscaffold_2G00149470
rosa_rugosa	Rorug02G0022900 Rorug02G0202800 Rorug02G0487900 Rorug04G0137700 Rorug04G0224400 Rorug05G0380400
rosa_samantha	Rh1DG169300 Rh2AG068700 Rh2AG499500 Rh2BG068000 Rh2DG281100 Rh3AG180300 Rh3BG206500 Rh3CG203600 Rh3CG221900
rosa_wichuraiana	Rw2G005270 Rw2G041000 Rw5G022820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	24, 249
AclWI	GGATC	5 cut(s)	217, 232, 323, 336, 349
AcoI	YGGCCR	2 cut(s)	21, 241
AcsI	RAATTY	2 cut(s)	33, 73
AfiI	CCNNNNNNNGG	2 cut(s)	44, 236
AgsI	TTSAA	2 cut(s)	73, 341
AjnI	CCWGG	1 cut(s)	260
AluBI	AGCT	2 cut(s)	256, 290
AluI	AGCT	2 cut(s)	256, 290
AlwI	GGATC	5 cut(s)	217, 232, 323, 336, 349
AoxI	GGCC	2 cut(s)	21, 241
ApoI	RAATTY	2 cut(s)	33, 73
AsuHPI	GGTGA	3 cut(s)	199, 250, 281
BalI	TGGCCA	1 cut(s)	243
BamHI	GGATCC	1 cut(s)	328
BbsI	GAAGAC	1 cut(s)	348
BccI	CCATC	1 cut(s)	289
BciT130I	CCWGG	1 cut(s)	262
BfaI	CTAG	1 cut(s)	84
BfmI	CTRYAG	1 cut(s)	285
BglI	GCCNNNNNGGC	1 cut(s)	249
BisI	GCNGC	2 cut(s)	24, 250
BlsI	GCNGC	2 cut(s)	25, 251
Bme1390I	CCNGG	1 cut(s)	262
BmiI	GGNNCC	1 cut(s)	330
BmrFI	CCNGG	1 cut(s)	262
BpiI	GAAGAC	1 cut(s)	348
BsaJI	CCNNGG	3 cut(s)	65, 244, 261
Bsc4I	CCNNNNNNNGG	2 cut(s)	44, 236
BseBI	CCWGG	1 cut(s)	262
BseDI	CCNNGG	3 cut(s)	65, 244, 261
BseLI	CCNNNNNNNGG	2 cut(s)	44, 236
BseMII	CTCAG	1 cut(s)	282
BseX3I	CGGCCG	1 cut(s)	21
Bsh1285I	CGRYCG	1 cut(s)	24
BshFI	GGCC	2 cut(s)	23, 243
BsiEI	CGRYCG	1 cut(s)	24
BslI	CCNNNNNNNGG	2 cut(s)	44, 236
BsnI	GGCC	2 cut(s)	23, 243
Bsp143I	GATC	5 cut(s)	209, 224, 271, 328, 354
Bsp19I	CCATGG	1 cut(s)	244
BspACI	CCGC	2 cut(s)	24, 249
BspANI	GGCC	2 cut(s)	23, 243
BspCNI	CTCAG	1 cut(s)	283
BspLI	GGNNCC	1 cut(s)	330
BspPI	GGATC	5 cut(s)	217, 232, 323, 336, 349
BssECI	CCNNGG	3 cut(s)	65, 244, 261
BssMI	GATC	5 cut(s)	209, 224, 271, 328, 354
BssT1I	CCWWGG	2 cut(s)	65, 244
Bst2UI	CCWGG	1 cut(s)	262
Bst4CI	ACNGT	1 cut(s)	349
BstC8I	GCNNGC	1 cut(s)	254
BstDEI	CTNAG	2 cut(s)	291, 324
BstDSI	CCRYGG	1 cut(s)	244
BstKTI	GATC	5 cut(s)	212, 227, 274, 331, 357
BstMBI	GATC	5 cut(s)	209, 224, 271, 328, 354
BstMCI	CGRYCG	1 cut(s)	24
BstMWI	GCNNNNNNNGC	2 cut(s)	57, 249
BstNI	CCWGG	1 cut(s)	262
BstSCI	CCNGG	1 cut(s)	260
BstSFI	CTRYAG	1 cut(s)	285
BstV2I	GAAGAC	1 cut(s)	348
BstX2I	RGATCY	2 cut(s)	328, 354
BstYI	RGATCY	2 cut(s)	328, 354
BstZI	CGGCCG	1 cut(s)	21
BsuRI	GGCC	2 cut(s)	23, 243
BtgI	CCRYGG	1 cut(s)	244
Cac8I	GCNNGC	1 cut(s)	254
CspCI	CAANNNNNGTGG	2 cut(s)	220, 255
CviAII	CATG	3 cut(s)	44, 217, 245
CviJI	RGCY	8 cut(s)	23, 51, 60, 243, 256, 266, 279, 290
CviKI_1	RGCY	8 cut(s)	23, 51, 60, 243, 256, 266, 279, 290
DdeI	CTNAG	2 cut(s)	291, 324
DpnI	GATC	5 cut(s)	211, 226, 273, 330, 356
DpnII	GATC	5 cut(s)	209, 224, 271, 328, 354
DraI	TTTAAA	1 cut(s)	96
EaeI	YGGCCR	2 cut(s)	21, 241
EagI	CGGCCG	1 cut(s)	21
EclXI	CGGCCG	1 cut(s)	21
Eco130I	CCWWGG	2 cut(s)	65, 244
Eco52I	CGGCCG	1 cut(s)	21
EcoRI	GAATTC	1 cut(s)	73
EcoRII	CCWGG	1 cut(s)	260
EcoT14I	CCWWGG	2 cut(s)	65, 244
ErhI	CCWWGG	2 cut(s)	65, 244
FaeI	CATG	3 cut(s)	47, 220, 248
FaiI	YATR	5 cut(s)	45, 91, 218, 246, 287
FatI	CATG	3 cut(s)	43, 216, 244
Fnu4HI	GCNGC	2 cut(s)	24, 250
Fsp4HI	GCNGC	2 cut(s)	24, 250
FspBI	CTAG	1 cut(s)	84
GluI	GCNGC	2 cut(s)	24, 250
HaeIII	GGCC	2 cut(s)	23, 243
Hin1II	CATG	3 cut(s)	47, 220, 248
HinfI	GANTC	3 cut(s)	157, 181, 320
HphI	GGTGA	3 cut(s)	199, 250, 281
Hpy188I	TCNGA	2 cut(s)	79, 306
Hpy188III	TCNNGA	1 cut(s)	207
HpyAV	CCTTC	2 cut(s)	187, 301
HpyCH4III	ACNGT	1 cut(s)	349
HpyF10VI	GCNNNNNNNGC	2 cut(s)	57, 249
HpyF3I	CTNAG	2 cut(s)	291, 324
Hsp92II	CATG	3 cut(s)	47, 220, 248
Kzo9I	GATC	5 cut(s)	209, 224, 271, 328, 354
LpnPI	CCDG	7 cut(s)	41, 170, 192, 247, 252, 260, 274
MaeI	CTAG	1 cut(s)	84
MalI	GATC	5 cut(s)	211, 226, 273, 330, 356
MboI	GATC	5 cut(s)	209, 224, 271, 328, 354
MboII	GAAGA	8 cut(s)	124, 127, 130, 133, 148, 166, 202, 353
MflI	RGATCY	2 cut(s)	328, 354
MlsI	TGGCCA	1 cut(s)	243
MluCI	AATT	2 cut(s)	33, 73
MluNI	TGGCCA	1 cut(s)	243
MlyI	GAGTC	1 cut(s)	314
MmeI	TCCRAC	1 cut(s)	85
Mox20I	TGGCCA	1 cut(s)	243
MscI	TGGCCA	1 cut(s)	243
MseI	TTAA	2 cut(s)	95, 351
Msp20I	TGGCCA	1 cut(s)	243
MspR9I	CCNGG	1 cut(s)	262
MvaI	CCWGG	1 cut(s)	262
MwoI	GCNNNNNNNGC	2 cut(s)	57, 249
NcoI	CCATGG	1 cut(s)	244
NdeII	GATC	5 cut(s)	209, 224, 271, 328, 354
NlaIII	CATG	3 cut(s)	47, 220, 248
NlaIV	GGNNCC	1 cut(s)	330
PfeI	GAWTC	2 cut(s)	157, 181
PkrI	GCNGC	2 cut(s)	25, 251
PleI	GAGTC	1 cut(s)	314
PpsI	GAGTC	1 cut(s)	314
Psp6I	CCWGG	1 cut(s)	260
PspGI	CCWGG	1 cut(s)	260
PspN4I	GGNNCC	1 cut(s)	330
PsuI	RGATCY	2 cut(s)	328, 354
SaqAI	TTAA	2 cut(s)	95, 351
SatI	GCNGC	2 cut(s)	24, 250
Sau3AI	GATC	5 cut(s)	209, 224, 271, 328, 354
SchI	GAGTC	1 cut(s)	314
ScrFI	CCNGG	1 cut(s)	262
SetI	ASST	5 cut(s)	189, 241, 258, 263, 292
SfcI	CTRYAG	1 cut(s)	285
Sse9I	AATT	2 cut(s)	33, 73
SsiI	CCGC	2 cut(s)	24, 249
SspMI	CTAG	1 cut(s)	84
StyD4I	CCNGG	1 cut(s)	260
StyI	CCWWGG	2 cut(s)	65, 244
TaaI	ACNGT	1 cut(s)	349
TaqI	TCGA	1 cut(s)	318
TasI	AATT	2 cut(s)	33, 73
TauI	GCSGC	2 cut(s)	26, 252
TfiI	GAWTC	2 cut(s)	157, 181
Tru1I	TTAA	2 cut(s)	95, 351
Tru9I	TTAA	2 cut(s)	95, 351
TspDTI	ATGAA	4 cut(s)	32, 78, 149, 233
XapI	RAATTY	2 cut(s)	33, 73
XspI	CTAG	1 cut(s)	84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.