FvH4_1g09390

component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0008378
Physical Location & Seq
Forward (+)
5040134 .. 5042106
1973 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g09390.t1

Sequence Viewer

Length: 699 bp
ATGGGACAGCAAACGCCGCCGTCGCCACAGCAGCAAGTGTCGTTCACGGTGGAGCAATTGGTCGCCGTCAATCCATACAACCCCGATATCCTCCCCGATCTCGAAAGCTACGTCAACGAGCAGGTTTCGTCACAGACTTACAGTCTTGATGCGAATCTCTGCCTGCTTCGTCTGTATCAGTTTGAGCCGGAGCGTATGAGTACTCAGATTGTTGCTCGTATTTTGGTTAAGGCACTGATGGCAATGCCGGCTCCTGATTTCAGCCTCTGTCTCTTCCTAATTCCTGAAAGAGTGCAAATGGAGGAGCAGTTCAAGACTCTCATTGTGCTATCTCACTATTTGGAGACTGGAAGATTCAGTCAATTCTGGGATGAAGCATCTAAGAATCGTCACATACTTGAAGCTGTCCCAGGTTTTGAGCAAGCGATCCAAGCTTATGCAGTTCATGTTCTTTCCTTGACTTACCAAAAGGTTCCCAGATCTGTGCTTGCTGAGGCAATCAACCTTGAAGGTTTATCCTTGGACAAATTCCTTGAGCATCATGTAGCCAACAGCGGATGGGCTCTTGAAAAAGGTCATGGCAAGGGCCAACTCATTGTTTTGCCTCGAAATGAGTTCAACCATCCAGAGCTGAAGAAAAGCACAGATGATGGAATTCCATTAGACCATGTGGCTCGAATCTTTCCCATCCTGGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005852 GO:0032991 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CSN8_PSD8_EIF3K

Protein Analysis

233

Amino Acids

26.24

Weight (kDa)

5.34

Isoelectric Point (pI)

41.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CSN8_PSD8_EIF3K PF10075 67 - 192 8.6e-17 CSN8/PSMD8/EIF3K family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 112
AciI CCGC 2 cut(s) 17, 555
AclWI GGATC 1 cut(s) 421
AcsI RAATTY 2 cut(s) 527, 654
AcuI CTGAAG 1 cut(s) 653
AfaI GTAC 1 cut(s) 202
AfiI CCNNNNNNNGG 1 cut(s) 692
AgsI TTSAA 5 cut(s) 313, 401, 509, 569, 619
AhdI GACNNNNNGTC 1 cut(s) 141
AjnI CCWGG 2 cut(s) 409, 690
AloI GAACNNNNNNTCC 2 cut(s) 293, 325
AluBI AGCT 4 cut(s) 108, 404, 434, 631
AluI AGCT 4 cut(s) 108, 404, 434, 631
Alw26I GTCTC 2 cut(s) 275, 338
AlwI GGATC 1 cut(s) 421
AlwNI CAGNNNCTG 1 cut(s) 267
AoxI GGCC 1 cut(s) 586
ApeKI GCWGC 1 cut(s) 31
ApoI RAATTY 2 cut(s) 527, 654
ArsI GACNNNNNNTTYG 2 cut(s) 96, 128
AspS9I GGNCC 1 cut(s) 586
BanII GRGCYC 1 cut(s) 565
BbvCI CCTCAGC 1 cut(s) 492
BbvI GCAGC 1 cut(s) 43
BccI CCATC 5 cut(s) 232, 552, 630, 644, 695
BceAI ACGGC 2 cut(s) 4, 50
BciT130I CCWGG 2 cut(s) 411, 692
BcoDI GTCTC 2 cut(s) 275, 338
BfuAI ACCTGC 1 cut(s) 112
BglII AGATCT 1 cut(s) 479
BisI GCNGC 2 cut(s) 17, 32
BlsI GCNGC 2 cut(s) 18, 33
BmcAI AGTACT 1 cut(s) 202
Bme1390I CCNGG 2 cut(s) 411, 692
BmeRI GACNNNNNGTC 1 cut(s) 141
BmgT120I GGNCC 1 cut(s) 586
BmiI GGNNCC 2 cut(s) 252, 474
BmrFI CCNGG 2 cut(s) 411, 692
BmsI GCATC 3 cut(s) 139, 386, 547
Bpu10I CCTNAGC 1 cut(s) 492
BpuEI CTTGAG 1 cut(s) 554
BsaBI GATNNNNATC 1 cut(s) 153
BsaJI CCNNGG 3 cut(s) 409, 519, 691
BsaXI ACNNNNNCTCC 2 cut(s) 293, 323
Bsc4I CCNNNNNNNGG 1 cut(s) 692
Bse118I RCCGGY 1 cut(s) 247
Bse1I ACTGG 1 cut(s) 352
Bse3DI GCAATG 1 cut(s) 249
Bse8I GATNNNNATC 1 cut(s) 153
BseBI CCWGG 2 cut(s) 411, 692
BseDI CCNNGG 3 cut(s) 409, 519, 691
BseGI GGATG 4 cut(s) 376, 563, 622, 687
BseJI GATNNNNATC 1 cut(s) 153
BseLI CCNNNNNNNGG 1 cut(s) 692
BseMI GCAATG 1 cut(s) 249
BseMII CTCAG 2 cut(s) 218, 483
BseNI ACTGG 1 cut(s) 352
BseRI GAGGAG 1 cut(s) 317
BseXI GCAGC 1 cut(s) 43
BshFI GGCC 1 cut(s) 588
BsiSI CCGG 2 cut(s) 188, 248
BslFI GGGAC 2 cut(s) 18, 392
BslI CCNNNNNNNGG 1 cut(s) 692
BsmAI GTCTC 2 cut(s) 275, 338
BsmFI GGGAC 2 cut(s) 18, 392
BsnI GGCC 1 cut(s) 588
Bsp1286I GDGCHC 1 cut(s) 565
Bsp143I GATC 3 cut(s) 97, 426, 479
BspACI CCGC 2 cut(s) 17, 555
BspANI GGCC 1 cut(s) 588
BspCNI CTCAG 2 cut(s) 217, 484
BspLI GGNNCC 2 cut(s) 252, 474
BspMI ACCTGC 1 cut(s) 112
BspPI GGATC 1 cut(s) 421
BsrDI GCAATG 1 cut(s) 249
BsrFI RCCGGY 1 cut(s) 247
BsrI ACTGG 1 cut(s) 352
BssAI RCCGGY 1 cut(s) 247
BssECI CCNNGG 3 cut(s) 409, 519, 691
BssMI GATC 3 cut(s) 97, 426, 479
BssT1I CCWWGG 1 cut(s) 519
Bst2UI CCWGG 2 cut(s) 411, 692
Bst4CI ACNGT 2 cut(s) 49, 143
Bst6I CTCTTC 1 cut(s) 278
BstC8I GCNNGC 4 cut(s) 164, 249, 423, 489
BstDEI CTNAG 3 cut(s) 204, 381, 492
BstF5I GGATG 4 cut(s) 376, 563, 622, 687
BstKTI GATC 3 cut(s) 100, 429, 482
BstMAI GTCTC 2 cut(s) 275, 338
BstMBI GATC 3 cut(s) 97, 426, 479
BstMWI GCNNNNNNNGC 6 cut(s) 16, 22, 31, 239, 248, 431
BstNI CCWGG 2 cut(s) 411, 692
BstSCI CCNGG 2 cut(s) 409, 690
BstV1I GCAGC 1 cut(s) 43
BstX2I RGATCY 1 cut(s) 479
BstYI RGATCY 1 cut(s) 479
BsuRI GGCC 1 cut(s) 588
BtsCI GGATG 4 cut(s) 376, 563, 622, 687
BtsIMutI CAGTG 1 cut(s) 233
BveI ACCTGC 1 cut(s) 112
Cac8I GCNNGC 4 cut(s) 164, 249, 423, 489
CaiI CAGNNNCTG 1 cut(s) 267
Cfr10I RCCGGY 1 cut(s) 247
Cfr13I GGNCC 1 cut(s) 586
Csp6I GTAC 1 cut(s) 201
CviAII CATG 4 cut(s) 446, 542, 578, 668
CviQI GTAC 1 cut(s) 201
DdeI CTNAG 3 cut(s) 204, 381, 492
DpnI GATC 3 cut(s) 99, 428, 481
DpnII GATC 3 cut(s) 97, 426, 479
DriI GACNNNNNGTC 1 cut(s) 141
Eam1104I CTCTTC 1 cut(s) 278
Eam1105I GACNNNNNGTC 1 cut(s) 141
EarI CTCTTC 1 cut(s) 278
Eco130I CCWWGG 1 cut(s) 519
Eco24I GRGCYC 1 cut(s) 565
Eco32I GATATC 1 cut(s) 88
Eco57I CTGAAG 1 cut(s) 653
EcoRI GAATTC 1 cut(s) 654
EcoRII CCWGG 2 cut(s) 409, 690
EcoRV GATATC 1 cut(s) 88
EcoT14I CCWWGG 1 cut(s) 519
EcoT38I GRGCYC 1 cut(s) 565
ErhI CCWWGG 1 cut(s) 519
FaeI CATG 4 cut(s) 449, 545, 581, 671
FaiI YATR 8 cut(s) 76, 197, 395, 438, 447, 543, 579, 669
FaqI GGGAC 2 cut(s) 18, 392
FatI CATG 4 cut(s) 445, 541, 577, 667
Fnu4HI GCNGC 2 cut(s) 17, 32
FokI GGATG 4 cut(s) 383, 570, 609, 674
FriOI GRGCYC 1 cut(s) 565
Fsp4HI GCNGC 2 cut(s) 17, 32
GluI GCNGC 2 cut(s) 17, 32
HaeIII GGCC 1 cut(s) 588
HapII CCGG 2 cut(s) 188, 248
Hin1II CATG 4 cut(s) 449, 545, 581, 671
HincII GTYRAC 1 cut(s) 115
HindII GTYRAC 1 cut(s) 115
HindIII AAGCTT 1 cut(s) 432
HinfI GANTC 5 cut(s) 154, 316, 354, 385, 678
HpaII CCGG 2 cut(s) 188, 248
Hpy166II GTNNAC 2 cut(s) 45, 115
Hpy188I TCNGA 1 cut(s) 207
Hpy188III TCNNGA 7 cut(s) 101, 146, 254, 284, 313, 566, 626
Hpy8I GTNNAC 2 cut(s) 45, 115
Hpy99I CGWCG 1 cut(s) 25
HpyAV CCTTC 1 cut(s) 503
HpyCH4III ACNGT 2 cut(s) 49, 143
HpyCH4IV ACGT 1 cut(s) 111
HpyCH4V TGCA 2 cut(s) 295, 440
HpyF10VI GCNNNNNNNGC 6 cut(s) 16, 22, 31, 239, 248, 431
HpyF3I CTNAG 3 cut(s) 204, 381, 492
HpySE526I ACGT 1 cut(s) 111
Hsp92II CATG 4 cut(s) 449, 545, 581, 671
KroI GCCGGC 1 cut(s) 247
KroNI GCCGGC 1 cut(s) 249
Kzo9I GATC 3 cut(s) 97, 426, 479
LmnI GCTCC 4 cut(s) 52, 190, 256, 304
Lsp1109I GCAGC 1 cut(s) 43
LweI GCATC 3 cut(s) 139, 386, 547
MaeII ACGT 1 cut(s) 111
MaeIII GTNAC 2 cut(s) 129, 389
MalI GATC 3 cut(s) 99, 428, 481
MboI GATC 3 cut(s) 97, 426, 479
MboII GAAGA 3 cut(s) 265, 363, 646
MfeI CAATTG 1 cut(s) 56
MflI RGATCY 1 cut(s) 479
MhlI GDGCHC 1 cut(s) 565
MluCI AATT 5 cut(s) 56, 279, 362, 527, 654
MlyI GAGTC 1 cut(s) 310
MnlI CCTC 5 cut(s) 101, 275, 295, 487, 615
MroNI GCCGGC 1 cut(s) 247
MseI TTAA 1 cut(s) 228
MspA1I CMGCKG 1 cut(s) 555
MspI CCGG 2 cut(s) 188, 248
MspR9I CCNGG 2 cut(s) 411, 692
MunI CAATTG 1 cut(s) 56
MvaI CCWGG 2 cut(s) 411, 692
MwoI GCNNNNNNNGC 6 cut(s) 16, 22, 31, 239, 248, 431
NaeI GCCGGC 1 cut(s) 249
NdeII GATC 3 cut(s) 97, 426, 479
NgoMIV GCCGGC 1 cut(s) 247
NlaIII CATG 4 cut(s) 449, 545, 581, 671
NlaIV GGNNCC 2 cut(s) 252, 474
NmuCI GTSAC 2 cut(s) 129, 389
PcsI WCGNNNNNNNCGW 1 cut(s) 108
PdiI GCCGGC 1 cut(s) 249
PfeI GAWTC 4 cut(s) 154, 354, 385, 678
PkrI GCNGC 2 cut(s) 18, 33
PleI GAGTC 1 cut(s) 310
PpsI GAGTC 1 cut(s) 310
Psp6I CCWGG 2 cut(s) 409, 690
PspGI CCWGG 2 cut(s) 409, 690
PspN4I GGNNCC 2 cut(s) 252, 474
PspPI GGNCC 1 cut(s) 586
PstNI CAGNNNCTG 1 cut(s) 267
PsuI RGATCY 1 cut(s) 479
RsaI GTAC 1 cut(s) 202
RsaNI GTAC 1 cut(s) 201
SaqAI TTAA 1 cut(s) 228
SatI GCNGC 2 cut(s) 17, 32
Sau3AI GATC 3 cut(s) 97, 426, 479
Sau96I GGNCC 1 cut(s) 586
ScaI AGTACT 1 cut(s) 202
SchI GAGTC 1 cut(s) 310
ScrFI CCNGG 2 cut(s) 411, 692
SduI GDGCHC 1 cut(s) 565
SfaNI GCATC 3 cut(s) 139, 386, 547
SmlI CTYRAG 1 cut(s) 533
SmoI CTYRAG 1 cut(s) 533
Sse9I AATT 5 cut(s) 56, 279, 362, 527, 654
SsiI CCGC 2 cut(s) 17, 555
StyD4I CCNGG 2 cut(s) 409, 690
StyI CCWWGG 1 cut(s) 519
TaaI ACNGT 2 cut(s) 49, 143
TaiI ACGT 1 cut(s) 114
TaqI TCGA 3 cut(s) 102, 607, 676
TasI AATT 5 cut(s) 56, 279, 362, 527, 654
TatI WGTACW 1 cut(s) 200
TauI GCSGC 1 cut(s) 19
TfiI GAWTC 4 cut(s) 154, 354, 385, 678
Tru1I TTAA 1 cut(s) 228
Tru9I TTAA 1 cut(s) 228
TscAI CASTG 1 cut(s) 240
TseFI GTSAC 2 cut(s) 129, 389
TseI GCWGC 1 cut(s) 31
Tsp45I GTSAC 2 cut(s) 129, 389
TspDTI ATGAA 2 cut(s) 387, 434
TspRI CASTG 1 cut(s) 240
XapI RAATTY 2 cut(s) 527, 654
ZrmI AGTACT 1 cut(s) 202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.