Rh2BG104600

component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0008378
Physical Location & Seq
Forward (+)
8739184 .. 8740962
1779 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG104600.1

Sequence Viewer

Length: 717 bp
ATGGGAAGAGAGGCTCCACAGCAAACGCCGCCGTCGCCGCAGCCGCAGCAGCAAGTGTCGTTCACGGTGGAGCAATTGGTCGCCGTCAATCCCTACAACCCCGATATCCTCCCCGATCTCGAAAGCTACGTCAACGAGCAGGTTTCGTCACAGACCTACAGTCTCGATGCGAATCTCTGCCTTCTTCGCCTCTATCAGTTTGAGCCGGAGCGTATGAGCACTCAAATTGTTGCTCGTATTTTGGTTAAGGCACTGATGGCAATGCCCGCTCCCGATTTCAGCCTCTGTCTCTTCCTAATTCCAGAAAGAGTGCAAATGGAGGAGCAGTTCAAGACTCTAATTGTCCTATCTCACTATCTAGAGACAGGAAGATTCAGTCAATTCTGGGATGAAGCATCTAAGAATCGTCACATACTTGAAGCTGTCCCAGGTTTTGAGCAAGCGGTCCAAGCCTATGCAGTTCATGTTCTTTCCTTGACTTACCAAAAGGTTCCCAGATCTGTGCTAGCTGAGGCAATCAACCTTGAAGGTATATCCTTGGACAAATTCCTTGAGCATCATGTGGCCAATAGCGGTTGGGTTCTTGAAAAAGGTCATGGCAAGGGCCAACTCATTGTCTTACCTCGAAATGAATTTAACCATCCCGAGCTGAAGAAAAGCACAGACGATGGAATTCCATTAGACCATGTGGCTCGAATCTTCCCCATCCTGGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005852 GO:0032991 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CSN8_PSD8_EIF3K

Protein Analysis

238

Amino Acids

26.93

Weight (kDa)

5.35

Isoelectric Point (pI)

44.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CSN8_PSD8_EIF3K PF10075 73 - 198 1.3e-16 CSN8/PSMD8/EIF3K family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 130
AccBSI CCGCTC 1 cut(s) 269
AciI CCGC 6 cut(s) 29, 38, 44, 267, 443, 573
AcoI YGGCCR 1 cut(s) 564
AcsI RAATTY 3 cut(s) 545, 632, 672
AcuI CTGAAG 1 cut(s) 671
AfiI CCNNNNNNNGG 2 cut(s) 709, 710
AgsI TTSAA 4 cut(s) 331, 419, 527, 587
AhdI GACNNNNNGTC 1 cut(s) 159
AjnI CCWGG 2 cut(s) 427, 708
AloI GAACNNNNNNTCC 2 cut(s) 311, 343
AluBI AGCT 4 cut(s) 126, 422, 509, 649
AluI AGCT 4 cut(s) 126, 422, 509, 649
Alw21I GWGCWC 1 cut(s) 221
Alw26I GTCTC 3 cut(s) 167, 293, 356
AlwNI CAGNNNCTG 1 cut(s) 285
Ama87I CYCGRG 1 cut(s) 644
AoxI GGCC 2 cut(s) 564, 604
ApeKI GCWGC 3 cut(s) 40, 46, 49
ApoI RAATTY 3 cut(s) 545, 632, 672
ArsI GACNNNNNNTTYG 2 cut(s) 114, 146
AspS9I GGNCC 2 cut(s) 445, 604
AsuNHI GCTAGC 1 cut(s) 505
AvaI CYCGRG 1 cut(s) 644
AvaII GGWCC 1 cut(s) 445
BalI TGGCCA 1 cut(s) 566
Bbv12I GWGCWC 1 cut(s) 221
BbvCI CCTCAGC 1 cut(s) 510
BbvI GCAGC 3 cut(s) 52, 58, 61
BccI CCATC 4 cut(s) 250, 648, 662, 713
BceAI ACGGC 2 cut(s) 16, 68
BciT130I CCWGG 2 cut(s) 429, 710
BcoDI GTCTC 3 cut(s) 167, 293, 356
BfaI CTAG 2 cut(s) 359, 506
BfmI CTRYAG 1 cut(s) 157
BfuAI ACCTGC 1 cut(s) 130
BglII AGATCT 1 cut(s) 497
BisI GCNGC 6 cut(s) 29, 38, 41, 44, 47, 50
BlsI GCNGC 6 cut(s) 30, 39, 42, 45, 48, 51
Bme1390I CCNGG 2 cut(s) 429, 710
Bme18I GGWCC 1 cut(s) 445
BmeRI GACNNNNNGTC 1 cut(s) 159
BmeT110I CYCGRG 1 cut(s) 644
BmgT120I GGNCC 2 cut(s) 445, 604
BmiI GGNNCC 2 cut(s) 15, 492
BmrFI CCNGG 2 cut(s) 429, 710
BmsI GCATC 3 cut(s) 157, 404, 565
BmtI GCTAGC 1 cut(s) 509
Bpu10I CCTNAGC 1 cut(s) 510
BpuEI CTTGAG 1 cut(s) 572
BsaBI GATNNNNATC 1 cut(s) 171
BsaJI CCNNGG 3 cut(s) 427, 537, 709
BsaXI ACNNNNNCTCC 2 cut(s) 311, 341
Bsc4I CCNNNNNNNGG 2 cut(s) 709, 710
Bse3DI GCAATG 1 cut(s) 267
Bse8I GATNNNNATC 1 cut(s) 171
BseBI CCWGG 2 cut(s) 429, 710
BseDI CCNNGG 3 cut(s) 427, 537, 709
BseGI GGATG 3 cut(s) 394, 640, 705
BseJI GATNNNNATC 1 cut(s) 171
BseLI CCNNNNNNNGG 2 cut(s) 709, 710
BseMI GCAATG 1 cut(s) 267
BseMII CTCAG 1 cut(s) 501
BseRI GAGGAG 1 cut(s) 335
BseXI GCAGC 3 cut(s) 52, 58, 61
BshFI GGCC 2 cut(s) 566, 606
BsiHKAI GWGCWC 1 cut(s) 221
BsiHKCI CYCGRG 1 cut(s) 644
BsiSI CCGG 1 cut(s) 206
BslFI GGGAC 1 cut(s) 410
BslI CCNNNNNNNGG 2 cut(s) 709, 710
BsmAI GTCTC 3 cut(s) 167, 293, 356
BsmFI GGGAC 1 cut(s) 410
BsnI GGCC 2 cut(s) 566, 606
BsoBI CYCGRG 1 cut(s) 644
Bsp1286I GDGCHC 1 cut(s) 221
Bsp143I GATC 2 cut(s) 115, 497
BspACI CCGC 6 cut(s) 29, 38, 44, 267, 443, 573
BspANI GGCC 2 cut(s) 566, 606
BspCNI CTCAG 1 cut(s) 502
BspLI GGNNCC 2 cut(s) 15, 492
BspMI ACCTGC 1 cut(s) 130
BspOI GCTAGC 1 cut(s) 509
BsrBI CCGCTC 1 cut(s) 269
BsrDI GCAATG 1 cut(s) 267
BssECI CCNNGG 3 cut(s) 427, 537, 709
BssMI GATC 2 cut(s) 115, 497
BssT1I CCWWGG 1 cut(s) 537
Bst2UI CCWGG 2 cut(s) 429, 710
Bst4CI ACNGT 2 cut(s) 67, 161
Bst6I CTCTTC 1 cut(s) 296
BstC8I GCNNGC 3 cut(s) 267, 441, 507
BstDEI CTNAG 2 cut(s) 399, 510
BstF5I GGATG 3 cut(s) 394, 640, 705
BstKTI GATC 2 cut(s) 118, 500
BstMAI GTCTC 3 cut(s) 167, 293, 356
BstMBI GATC 2 cut(s) 115, 497
BstNI CCWGG 2 cut(s) 429, 710
BstSCI CCNGG 2 cut(s) 427, 708
BstSFI CTRYAG 1 cut(s) 157
BstV1I GCAGC 3 cut(s) 52, 58, 61
BstX2I RGATCY 1 cut(s) 497
BstYI RGATCY 1 cut(s) 497
BsuRI GGCC 2 cut(s) 566, 606
BtsCI GGATG 3 cut(s) 394, 640, 705
BtsIMutI CAGTG 1 cut(s) 251
BveI ACCTGC 1 cut(s) 130
Cac8I GCNNGC 3 cut(s) 267, 441, 507
CaiI CAGNNNCTG 1 cut(s) 285
Cfr13I GGNCC 2 cut(s) 445, 604
CviAII CATG 4 cut(s) 464, 560, 596, 686
DdeI CTNAG 2 cut(s) 399, 510
DpnI GATC 2 cut(s) 117, 499
DpnII GATC 2 cut(s) 115, 497
DriI GACNNNNNGTC 1 cut(s) 159
EaeI YGGCCR 1 cut(s) 564
Eam1104I CTCTTC 1 cut(s) 296
Eam1105I GACNNNNNGTC 1 cut(s) 159
EarI CTCTTC 1 cut(s) 296
Eco130I CCWWGG 1 cut(s) 537
Eco32I GATATC 1 cut(s) 106
Eco47I GGWCC 1 cut(s) 445
Eco57I CTGAAG 1 cut(s) 671
Eco88I CYCGRG 1 cut(s) 644
EcoRI GAATTC 1 cut(s) 672
EcoRII CCWGG 2 cut(s) 427, 708
EcoRV GATATC 1 cut(s) 106
EcoT14I CCWWGG 1 cut(s) 537
ErhI CCWWGG 1 cut(s) 537
FaeI CATG 4 cut(s) 467, 563, 599, 689
FaiI YATR 8 cut(s) 215, 413, 456, 465, 533, 561, 597, 687
FaqI GGGAC 1 cut(s) 410
FatI CATG 4 cut(s) 463, 559, 595, 685
FauI CCCGC 1 cut(s) 274
Fnu4HI GCNGC 6 cut(s) 29, 38, 41, 44, 47, 50
FokI GGATG 3 cut(s) 401, 627, 692
Fsp4HI GCNGC 6 cut(s) 29, 38, 41, 44, 47, 50
FspBI CTAG 2 cut(s) 359, 506
GluI GCNGC 6 cut(s) 29, 38, 41, 44, 47, 50
HaeIII GGCC 2 cut(s) 566, 606
HapII CCGG 1 cut(s) 206
Hin1II CATG 4 cut(s) 467, 563, 599, 689
HincII GTYRAC 1 cut(s) 133
HindII GTYRAC 1 cut(s) 133
HinfI GANTC 5 cut(s) 172, 334, 372, 403, 696
HpaII CCGG 1 cut(s) 206
Hpy166II GTNNAC 2 cut(s) 63, 133
Hpy188III TCNNGA 8 cut(s) 119, 164, 272, 302, 331, 359, 584, 644
Hpy8I GTNNAC 2 cut(s) 63, 133
Hpy99I CGWCG 1 cut(s) 37
HpyAV CCTTC 2 cut(s) 191, 521
HpyCH4III ACNGT 2 cut(s) 67, 161
HpyCH4IV ACGT 1 cut(s) 129
HpyCH4V TGCA 2 cut(s) 313, 458
HpyF3I CTNAG 2 cut(s) 399, 510
HpySE526I ACGT 1 cut(s) 129
Hsp92II CATG 4 cut(s) 467, 563, 599, 689
Kzo9I GATC 2 cut(s) 115, 497
LmnI GCTCC 5 cut(s) 19, 70, 208, 274, 322
LpnPI CCDG 9 cut(s) 125, 219, 315, 351, 370, 414, 441, 508, 695
Lsp1109I GCAGC 3 cut(s) 52, 58, 61
LweI GCATC 3 cut(s) 157, 404, 565
MaeI CTAG 2 cut(s) 359, 506
MaeII ACGT 1 cut(s) 129
MaeIII GTNAC 2 cut(s) 147, 407
MalI GATC 2 cut(s) 117, 499
MbiI CCGCTC 1 cut(s) 269
MboI GATC 2 cut(s) 115, 497
MboII GAAGA 6 cut(s) 18, 176, 283, 381, 664, 691
MfeI CAATTG 1 cut(s) 74
MflI RGATCY 1 cut(s) 497
MhlI GDGCHC 1 cut(s) 221
MlsI TGGCCA 1 cut(s) 566
MluCI AATT 8 cut(s) 74, 225, 297, 339, 380, 545, 632, 672
MluNI TGGCCA 1 cut(s) 566
MlyI GAGTC 1 cut(s) 328
MnlI CCTC 7 cut(s) 4, 119, 200, 293, 313, 505, 633
Mox20I TGGCCA 1 cut(s) 566
MscI TGGCCA 1 cut(s) 566
MseI TTAA 2 cut(s) 246, 636
Msp20I TGGCCA 1 cut(s) 566
MspI CCGG 1 cut(s) 206
MspR9I CCNGG 2 cut(s) 429, 710
MunI CAATTG 1 cut(s) 74
MvaI CCWGG 2 cut(s) 429, 710
NdeII GATC 2 cut(s) 115, 497
NheI GCTAGC 1 cut(s) 505
NlaIII CATG 4 cut(s) 467, 563, 599, 689
NlaIV GGNNCC 2 cut(s) 15, 492
NmuCI GTSAC 2 cut(s) 147, 407
PcsI WCGNNNNNNNCGW 1 cut(s) 126
PfeI GAWTC 4 cut(s) 172, 372, 403, 696
PkrI GCNGC 6 cut(s) 30, 39, 42, 45, 48, 51
PleI GAGTC 1 cut(s) 328
PpsI GAGTC 1 cut(s) 328
Psp6I CCWGG 2 cut(s) 427, 708
PspGI CCWGG 2 cut(s) 427, 708
PspN4I GGNNCC 2 cut(s) 15, 492
PspPI GGNCC 2 cut(s) 445, 604
PstNI CAGNNNCTG 1 cut(s) 285
PsuI RGATCY 1 cut(s) 497
SaqAI TTAA 2 cut(s) 246, 636
SatI GCNGC 6 cut(s) 29, 38, 41, 44, 47, 50
Sau3AI GATC 2 cut(s) 115, 497
Sau96I GGNCC 2 cut(s) 445, 604
SchI GAGTC 1 cut(s) 328
ScrFI CCNGG 2 cut(s) 429, 710
SduI GDGCHC 1 cut(s) 221
SfaNI GCATC 3 cut(s) 157, 404, 565
SfcI CTRYAG 1 cut(s) 157
SinI GGWCC 1 cut(s) 445
SmlI CTYRAG 1 cut(s) 551
SmoI CTYRAG 1 cut(s) 551
Sse9I AATT 8 cut(s) 74, 225, 297, 339, 380, 545, 632, 672
SsiI CCGC 6 cut(s) 29, 38, 44, 267, 443, 573
SspMI CTAG 2 cut(s) 359, 506
StyD4I CCNGG 2 cut(s) 427, 708
StyI CCWWGG 1 cut(s) 537
TaaI ACNGT 2 cut(s) 67, 161
TaiI ACGT 1 cut(s) 132
TaqI TCGA 4 cut(s) 120, 165, 625, 694
TasI AATT 8 cut(s) 74, 225, 297, 339, 380, 545, 632, 672
TauI GCSGC 3 cut(s) 31, 40, 46
TfiI GAWTC 4 cut(s) 172, 372, 403, 696
Tru1I TTAA 2 cut(s) 246, 636
Tru9I TTAA 2 cut(s) 246, 636
TscAI CASTG 1 cut(s) 258
TseFI GTSAC 2 cut(s) 147, 407
TseI GCWGC 3 cut(s) 40, 46, 49
Tsp45I GTSAC 2 cut(s) 147, 407
TspDTI ATGAA 3 cut(s) 405, 452, 645
TspRI CASTG 1 cut(s) 258
VpaK11BI GGWCC 1 cut(s) 445
XapI RAATTY 3 cut(s) 545, 632, 672
XbaI TCTAGA 1 cut(s) 358
XspI CTAG 2 cut(s) 359, 506
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.