RchiOBHm_Chr2g0095941

component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0008378
Physical Location & Seq
Forward (+)
8903328 .. 8905326
1999 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ47091

Sequence Viewer

Length: 723 bp
ATGGGAAGAGAGGCTCCACAGCAAACGCCGCCGTCGCCGCAGCATCAGCAGCAGCAGCAAGTGTCGTTCACGGTGGAGCAATTGGTCGCCGTCAATCCGTACAACCCCGATATCCTCCCCGATCTCGAAAGCTACGTCAACGAGCAGGTTTCGTCACAGACCTACAGTCTCGATGCGAATCTCTGCCTTCTTCGTCTCTATCAGTTTGAGCCGGAGCGTATGAGCACTCAAATTGTTGCTCGTATTTTGGTTAAGGCACTGATGGCAATGCCCGCTCCCGATTTCAGCCTCTGTCTCTTCCTAATTCCAGAAAGAGTGCAAATGGAGGAGCAGTTCAAGACTCTAATTGTCCTATCTCACTATCTAGAGACAGGAAGATTCAGTCAATTCTGGGATGAAGCATCTAAGAATCGTCACATACTTGAAGCTGTCCCAGGTTTTGAGCAAGCGGTCCAAGCCTATGCAGTTCATGTTCTTTCCTTGACTTACCAAAAGGTTCCCAGATCTGTGCTTGCTGAGGCAATCAACCTTGAAGGTATATCCTTGGACAAATTCCTTGAGCATCATGTGGCCAATAGCGGTTGGGTTCTTGAAAAAGGTCATGGCAAGGGCCAACTCATTGTCTTACCTCGAAATGAATTTAACCATCCCGAGCTGAAGAAAAGCACAGACGATGGAATTCCATTAGACCATGTGGCTCGAATCTTCCCCATCCTGGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005852 GO:0032991 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CSN8_PSD8_EIF3K

Protein Analysis

240

Amino Acids

27.22

Weight (kDa)

5.45

Isoelectric Point (pI)

43.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CSN8_PSD8_EIF3K PF10075 75 - 200 1.3e-16 CSN8/PSMD8/EIF3K family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 136
AccBSI CCGCTC 1 cut(s) 275
AciI CCGC 5 cut(s) 29, 38, 273, 449, 579
AcoI YGGCCR 1 cut(s) 570
AcsI RAATTY 3 cut(s) 551, 638, 678
AcuI CTGAAG 1 cut(s) 677
AfaI GTAC 1 cut(s) 101
AfiI CCNNNNNNNGG 2 cut(s) 715, 716
AgsI TTSAA 4 cut(s) 337, 425, 533, 593
AhdI GACNNNNNGTC 1 cut(s) 165
AjnI CCWGG 2 cut(s) 433, 714
AloI GAACNNNNNNTCC 2 cut(s) 317, 349
AluBI AGCT 3 cut(s) 132, 428, 655
AluI AGCT 3 cut(s) 132, 428, 655
Alw21I GWGCWC 1 cut(s) 227
Alw26I GTCTC 4 cut(s) 173, 200, 299, 362
AlwNI CAGNNNCTG 1 cut(s) 291
Ama87I CYCGRG 1 cut(s) 650
AoxI GGCC 2 cut(s) 570, 610
ApeKI GCWGC 4 cut(s) 40, 49, 52, 55
ApoI RAATTY 3 cut(s) 551, 638, 678
ArsI GACNNNNNNTTYG 2 cut(s) 120, 152
AspS9I GGNCC 2 cut(s) 451, 610
AvaI CYCGRG 1 cut(s) 650
AvaII GGWCC 1 cut(s) 451
BalI TGGCCA 1 cut(s) 572
Bbv12I GWGCWC 1 cut(s) 227
BbvCI CCTCAGC 1 cut(s) 516
BbvI GCAGC 4 cut(s) 52, 61, 64, 67
BccI CCATC 4 cut(s) 256, 654, 668, 719
BceAI ACGGC 2 cut(s) 16, 74
BciT130I CCWGG 2 cut(s) 435, 716
BcoDI GTCTC 4 cut(s) 173, 200, 299, 362
BfaI CTAG 1 cut(s) 365
BfmI CTRYAG 1 cut(s) 163
BfuAI ACCTGC 1 cut(s) 136
BglII AGATCT 1 cut(s) 503
BisI GCNGC 6 cut(s) 29, 38, 41, 50, 53, 56
BlsI GCNGC 6 cut(s) 30, 39, 42, 51, 54, 57
Bme1390I CCNGG 2 cut(s) 435, 716
Bme18I GGWCC 1 cut(s) 451
BmeRI GACNNNNNGTC 1 cut(s) 165
BmeT110I CYCGRG 1 cut(s) 650
BmgT120I GGNCC 2 cut(s) 451, 610
BmiI GGNNCC 2 cut(s) 15, 498
BmrFI CCNGG 2 cut(s) 435, 716
BmsI GCATC 4 cut(s) 52, 163, 410, 571
Bpu10I CCTNAGC 1 cut(s) 516
BpuEI CTTGAG 1 cut(s) 578
BsaBI GATNNNNATC 1 cut(s) 177
BsaJI CCNNGG 3 cut(s) 433, 543, 715
BsaXI ACNNNNNCTCC 2 cut(s) 317, 347
Bsc4I CCNNNNNNNGG 2 cut(s) 715, 716
Bse3DI GCAATG 1 cut(s) 273
Bse8I GATNNNNATC 1 cut(s) 177
BseBI CCWGG 2 cut(s) 435, 716
BseDI CCNNGG 3 cut(s) 433, 543, 715
BseGI GGATG 3 cut(s) 400, 646, 711
BseJI GATNNNNATC 1 cut(s) 177
BseLI CCNNNNNNNGG 2 cut(s) 715, 716
BseMI GCAATG 1 cut(s) 273
BseMII CTCAG 1 cut(s) 507
BseRI GAGGAG 1 cut(s) 341
BseXI GCAGC 4 cut(s) 52, 61, 64, 67
BshFI GGCC 2 cut(s) 572, 612
BsiHKAI GWGCWC 1 cut(s) 227
BsiHKCI CYCGRG 1 cut(s) 650
BsiSI CCGG 1 cut(s) 212
BslFI GGGAC 1 cut(s) 416
BslI CCNNNNNNNGG 2 cut(s) 715, 716
BsmAI GTCTC 4 cut(s) 173, 200, 299, 362
BsmBI CGTCTC 1 cut(s) 200
BsmFI GGGAC 1 cut(s) 416
BsnI GGCC 2 cut(s) 572, 612
BsoBI CYCGRG 1 cut(s) 650
Bsp1286I GDGCHC 1 cut(s) 227
Bsp143I GATC 2 cut(s) 121, 503
BspACI CCGC 5 cut(s) 29, 38, 273, 449, 579
BspANI GGCC 2 cut(s) 572, 612
BspCNI CTCAG 1 cut(s) 508
BspLI GGNNCC 2 cut(s) 15, 498
BspMI ACCTGC 1 cut(s) 136
BsrBI CCGCTC 1 cut(s) 275
BsrDI GCAATG 1 cut(s) 273
BssECI CCNNGG 3 cut(s) 433, 543, 715
BssMI GATC 2 cut(s) 121, 503
BssT1I CCWWGG 1 cut(s) 543
Bst2UI CCWGG 2 cut(s) 435, 716
Bst4CI ACNGT 2 cut(s) 73, 167
Bst6I CTCTTC 1 cut(s) 302
BstC8I GCNNGC 3 cut(s) 273, 447, 513
BstDEI CTNAG 2 cut(s) 405, 516
BstF5I GGATG 3 cut(s) 400, 646, 711
BstKTI GATC 2 cut(s) 124, 506
BstMAI GTCTC 4 cut(s) 173, 200, 299, 362
BstMBI GATC 2 cut(s) 121, 503
BstMWI GCNNNNNNNGC 9 cut(s) 28, 34, 37, 46, 49, 55, 263, 272, 455
BstNI CCWGG 2 cut(s) 435, 716
BstSCI CCNGG 2 cut(s) 433, 714
BstSFI CTRYAG 1 cut(s) 163
BstV1I GCAGC 4 cut(s) 52, 61, 64, 67
BstX2I RGATCY 1 cut(s) 503
BstYI RGATCY 1 cut(s) 503
BsuRI GGCC 2 cut(s) 572, 612
BtsCI GGATG 3 cut(s) 400, 646, 711
BtsIMutI CAGTG 1 cut(s) 257
BveI ACCTGC 1 cut(s) 136
Cac8I GCNNGC 3 cut(s) 273, 447, 513
CaiI CAGNNNCTG 1 cut(s) 291
Cfr13I GGNCC 2 cut(s) 451, 610
Csp6I GTAC 1 cut(s) 100
CviAII CATG 4 cut(s) 470, 566, 602, 692
CviQI GTAC 1 cut(s) 100
DdeI CTNAG 2 cut(s) 405, 516
DpnI GATC 2 cut(s) 123, 505
DpnII GATC 2 cut(s) 121, 503
DriI GACNNNNNGTC 1 cut(s) 165
EaeI YGGCCR 1 cut(s) 570
Eam1104I CTCTTC 1 cut(s) 302
Eam1105I GACNNNNNGTC 1 cut(s) 165
EarI CTCTTC 1 cut(s) 302
Eco130I CCWWGG 1 cut(s) 543
Eco32I GATATC 1 cut(s) 112
Eco47I GGWCC 1 cut(s) 451
Eco57I CTGAAG 1 cut(s) 677
Eco88I CYCGRG 1 cut(s) 650
EcoRI GAATTC 1 cut(s) 678
EcoRII CCWGG 2 cut(s) 433, 714
EcoRV GATATC 1 cut(s) 112
EcoT14I CCWWGG 1 cut(s) 543
ErhI CCWWGG 1 cut(s) 543
Esp3I CGTCTC 1 cut(s) 200
FaeI CATG 4 cut(s) 473, 569, 605, 695
FaiI YATR 8 cut(s) 221, 419, 462, 471, 539, 567, 603, 693
FaqI GGGAC 1 cut(s) 416
FatI CATG 4 cut(s) 469, 565, 601, 691
FauI CCCGC 1 cut(s) 280
Fnu4HI GCNGC 6 cut(s) 29, 38, 41, 50, 53, 56
FokI GGATG 3 cut(s) 407, 633, 698
Fsp4HI GCNGC 6 cut(s) 29, 38, 41, 50, 53, 56
FspBI CTAG 1 cut(s) 365
GluI GCNGC 6 cut(s) 29, 38, 41, 50, 53, 56
HaeIII GGCC 2 cut(s) 572, 612
HapII CCGG 1 cut(s) 212
Hin1II CATG 4 cut(s) 473, 569, 605, 695
HincII GTYRAC 1 cut(s) 139
HindII GTYRAC 1 cut(s) 139
HinfI GANTC 5 cut(s) 178, 340, 378, 409, 702
HpaII CCGG 1 cut(s) 212
Hpy166II GTNNAC 2 cut(s) 69, 139
Hpy188III TCNNGA 8 cut(s) 125, 170, 278, 308, 337, 365, 590, 650
Hpy8I GTNNAC 2 cut(s) 69, 139
Hpy99I CGWCG 1 cut(s) 37
HpyAV CCTTC 2 cut(s) 197, 527
HpyCH4III ACNGT 2 cut(s) 73, 167
HpyCH4IV ACGT 1 cut(s) 135
HpyCH4V TGCA 2 cut(s) 319, 464
HpyF10VI GCNNNNNNNGC 9 cut(s) 28, 34, 37, 46, 49, 55, 263, 272, 455
HpyF3I CTNAG 2 cut(s) 405, 516
HpySE526I ACGT 1 cut(s) 135
Hsp92II CATG 4 cut(s) 473, 569, 605, 695
Kzo9I GATC 2 cut(s) 121, 503
LmnI GCTCC 5 cut(s) 19, 76, 214, 280, 328
LpnPI CCDG 9 cut(s) 131, 225, 321, 357, 376, 420, 447, 514, 701
Lsp1109I GCAGC 4 cut(s) 52, 61, 64, 67
LweI GCATC 4 cut(s) 52, 163, 410, 571
MaeI CTAG 1 cut(s) 365
MaeII ACGT 1 cut(s) 135
MaeIII GTNAC 2 cut(s) 153, 413
MalI GATC 2 cut(s) 123, 505
MbiI CCGCTC 1 cut(s) 275
MboI GATC 2 cut(s) 121, 503
MboII GAAGA 6 cut(s) 18, 182, 289, 387, 670, 697
MfeI CAATTG 1 cut(s) 80
MflI RGATCY 1 cut(s) 503
MhlI GDGCHC 1 cut(s) 227
MlsI TGGCCA 1 cut(s) 572
MluCI AATT 8 cut(s) 80, 231, 303, 345, 386, 551, 638, 678
MluNI TGGCCA 1 cut(s) 572
MlyI GAGTC 1 cut(s) 334
MnlI CCTC 6 cut(s) 4, 125, 299, 319, 511, 639
Mox20I TGGCCA 1 cut(s) 572
MscI TGGCCA 1 cut(s) 572
MseI TTAA 2 cut(s) 252, 642
Msp20I TGGCCA 1 cut(s) 572
MspI CCGG 1 cut(s) 212
MspR9I CCNGG 2 cut(s) 435, 716
MunI CAATTG 1 cut(s) 80
MvaI CCWGG 2 cut(s) 435, 716
MwoI GCNNNNNNNGC 9 cut(s) 28, 34, 37, 46, 49, 55, 263, 272, 455
NdeII GATC 2 cut(s) 121, 503
NlaIII CATG 4 cut(s) 473, 569, 605, 695
NlaIV GGNNCC 2 cut(s) 15, 498
NmuCI GTSAC 2 cut(s) 153, 413
PcsI WCGNNNNNNNCGW 1 cut(s) 132
PfeI GAWTC 4 cut(s) 178, 378, 409, 702
PkrI GCNGC 6 cut(s) 30, 39, 42, 51, 54, 57
PleI GAGTC 1 cut(s) 334
PpsI GAGTC 1 cut(s) 334
Psp6I CCWGG 2 cut(s) 433, 714
PspGI CCWGG 2 cut(s) 433, 714
PspN4I GGNNCC 2 cut(s) 15, 498
PspPI GGNCC 2 cut(s) 451, 610
PstNI CAGNNNCTG 1 cut(s) 291
PsuI RGATCY 1 cut(s) 503
RsaI GTAC 1 cut(s) 101
RsaNI GTAC 1 cut(s) 100
SaqAI TTAA 2 cut(s) 252, 642
SatI GCNGC 6 cut(s) 29, 38, 41, 50, 53, 56
Sau3AI GATC 2 cut(s) 121, 503
Sau96I GGNCC 2 cut(s) 451, 610
SchI GAGTC 1 cut(s) 334
ScrFI CCNGG 2 cut(s) 435, 716
SduI GDGCHC 1 cut(s) 227
SfaNI GCATC 4 cut(s) 52, 163, 410, 571
SfcI CTRYAG 1 cut(s) 163
SinI GGWCC 1 cut(s) 451
SmlI CTYRAG 1 cut(s) 557
SmoI CTYRAG 1 cut(s) 557
Sse9I AATT 8 cut(s) 80, 231, 303, 345, 386, 551, 638, 678
SsiI CCGC 5 cut(s) 29, 38, 273, 449, 579
SspMI CTAG 1 cut(s) 365
StyD4I CCNGG 2 cut(s) 433, 714
StyI CCWWGG 1 cut(s) 543
TaaI ACNGT 2 cut(s) 73, 167
TaiI ACGT 1 cut(s) 138
TaqI TCGA 4 cut(s) 126, 171, 631, 700
TasI AATT 8 cut(s) 80, 231, 303, 345, 386, 551, 638, 678
TauI GCSGC 2 cut(s) 31, 40
TfiI GAWTC 4 cut(s) 178, 378, 409, 702
Tru1I TTAA 2 cut(s) 252, 642
Tru9I TTAA 2 cut(s) 252, 642
TscAI CASTG 1 cut(s) 264
TseFI GTSAC 2 cut(s) 153, 413
TseI GCWGC 4 cut(s) 40, 49, 52, 55
Tsp45I GTSAC 2 cut(s) 153, 413
TspDTI ATGAA 3 cut(s) 411, 458, 651
TspGWI ACGGA 1 cut(s) 87
TspRI CASTG 1 cut(s) 264
VpaK11BI GGWCC 1 cut(s) 451
XapI RAATTY 3 cut(s) 551, 638, 678
XbaI TCTAGA 1 cut(s) 364
XspI CTAG 1 cut(s) 365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.