Rh2CG107100

component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0008378
Physical Location & Seq
Forward (+)
9303871 .. 9305681
1811 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG107100.1

Sequence Viewer

Length: 789 bp
ATGGGAAGAGAGGCTCCACAGCAAACGCCGCCGTCGCCGCAGCCGCAGCAGCAAGTGTCGTTCACGGTGGAGCAATTGGTCGCCGTCAATCCCTACAACCCCGATATCCTCCCCGATCTCGAAAGCTACGTCAACGAGCAGGTTTCGTCACAGACCTACAGTCTCGATGCGAATCTCTGCCTTCTTCGCCTCTATCAGTTTGAGCCGGAGCGTATGAGCACTCAAATTGTTGCTCGTATTTTGGTTAAGGCACTGATGGCAATGCCCGCTCCCGATTTCAGCCTCTGTCTCTTCCTAATTCCAGAAAGAGTGCAAATGGAGGAGCAGTTCAAGACTCTAATTGTCCTATCTCACTATCTAGAGGTACAATTGCTTTACTGGAAATGTAGATTCATCAGCTATGCAGTTCCTAAAACTCTAGTTTTTGTTTCGCAGACAGGAAGATTCAGTCAATTCTGGGATGAAGCATCTAAGAATCGTCACATACTTGAAGCTGTCCCAGGTTTTGAGCAAGCGGTCCAAGCCTATGCAGTTCATGTTCTTTCCTTGACTTACCAAAAGGTTCCCAGATCTGTGCTAGCTGAGGCAATCAACCTTGAAGGTATATCCTTGGACAAATTCCTTGAGCATCATGTGGCCAATAGCGGTTGGGTTCTTGAAAAAGGTCATGGCAAGGGCCAACTCATTGTCTTACCTCGAAATGAATTTAACCATCCCGAGCTGAAGAAAAGCACAGACGATGGAATTCCATTAGACCATGTGGCTCGAATCTTCCCCATCCTGGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005852 GO:0032991 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CSN8_PSD8_EIF3K

Protein Analysis

262

Amino Acids

29.8

Weight (kDa)

5.76

Isoelectric Point (pI)

42.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 130
AccBSI CCGCTC 1 cut(s) 269
AciI CCGC 6 cut(s) 29, 38, 44, 267, 515, 645
AcoI YGGCCR 1 cut(s) 636
AcsI RAATTY 3 cut(s) 617, 704, 744
AcuI CTGAAG 1 cut(s) 743
AfaI GTAC 1 cut(s) 366
AfiI CCNNNNNNNGG 2 cut(s) 781, 782
AgsI TTSAA 4 cut(s) 331, 491, 599, 659
AhdI GACNNNNNGTC 1 cut(s) 159
AjnI CCWGG 2 cut(s) 499, 780
AloI GAACNNNNNNTCC 2 cut(s) 311, 343
AluBI AGCT 5 cut(s) 126, 399, 494, 581, 721
AluI AGCT 5 cut(s) 126, 399, 494, 581, 721
Alw21I GWGCWC 1 cut(s) 221
Alw26I GTCTC 2 cut(s) 167, 293
AlwNI CAGNNNCTG 1 cut(s) 285
Ama87I CYCGRG 1 cut(s) 716
AoxI GGCC 2 cut(s) 636, 676
ApeKI GCWGC 3 cut(s) 40, 46, 49
ApoI RAATTY 3 cut(s) 617, 704, 744
ArsI GACNNNNNNTTYG 2 cut(s) 114, 146
AspS9I GGNCC 2 cut(s) 517, 676
AsuNHI GCTAGC 1 cut(s) 577
AvaI CYCGRG 1 cut(s) 716
AvaII GGWCC 1 cut(s) 517
BalI TGGCCA 1 cut(s) 638
Bbv12I GWGCWC 1 cut(s) 221
BbvCI CCTCAGC 1 cut(s) 582
BbvI GCAGC 3 cut(s) 52, 58, 61
BccI CCATC 4 cut(s) 250, 720, 734, 785
BceAI ACGGC 2 cut(s) 16, 68
BciT130I CCWGG 2 cut(s) 501, 782
BcoDI GTCTC 2 cut(s) 167, 293
BfaI CTAG 3 cut(s) 359, 419, 578
BfmI CTRYAG 1 cut(s) 157
BfuAI ACCTGC 1 cut(s) 130
BglII AGATCT 1 cut(s) 569
BisI GCNGC 6 cut(s) 29, 38, 41, 44, 47, 50
BlsI GCNGC 6 cut(s) 30, 39, 42, 45, 48, 51
Bme1390I CCNGG 2 cut(s) 501, 782
Bme18I GGWCC 1 cut(s) 517
BmeRI GACNNNNNGTC 1 cut(s) 159
BmeT110I CYCGRG 1 cut(s) 716
BmgT120I GGNCC 2 cut(s) 517, 676
BmiI GGNNCC 2 cut(s) 15, 564
BmrFI CCNGG 2 cut(s) 501, 782
BmsI GCATC 3 cut(s) 157, 476, 637
BmtI GCTAGC 1 cut(s) 581
Bpu10I CCTNAGC 1 cut(s) 582
BpuEI CTTGAG 1 cut(s) 644
BsaBI GATNNNNATC 1 cut(s) 171
BsaJI CCNNGG 3 cut(s) 499, 609, 781
BsaXI ACNNNNNCTCC 2 cut(s) 311, 341
Bsc4I CCNNNNNNNGG 2 cut(s) 781, 782
Bse1I ACTGG 1 cut(s) 383
Bse3DI GCAATG 1 cut(s) 267
Bse8I GATNNNNATC 1 cut(s) 171
BseBI CCWGG 2 cut(s) 501, 782
BseDI CCNNGG 3 cut(s) 499, 609, 781
BseGI GGATG 3 cut(s) 466, 712, 777
BseJI GATNNNNATC 1 cut(s) 171
BseLI CCNNNNNNNGG 2 cut(s) 781, 782
BseMI GCAATG 1 cut(s) 267
BseMII CTCAG 1 cut(s) 573
BseNI ACTGG 1 cut(s) 383
BseRI GAGGAG 1 cut(s) 335
BseXI GCAGC 3 cut(s) 52, 58, 61
BshFI GGCC 2 cut(s) 638, 678
BsiHKAI GWGCWC 1 cut(s) 221
BsiHKCI CYCGRG 1 cut(s) 716
BsiSI CCGG 1 cut(s) 206
BslFI GGGAC 1 cut(s) 482
BslI CCNNNNNNNGG 2 cut(s) 781, 782
BsmAI GTCTC 2 cut(s) 167, 293
BsmFI GGGAC 1 cut(s) 482
BsnI GGCC 2 cut(s) 638, 678
BsoBI CYCGRG 1 cut(s) 716
Bsp1286I GDGCHC 1 cut(s) 221
Bsp143I GATC 2 cut(s) 115, 569
BspACI CCGC 6 cut(s) 29, 38, 44, 267, 515, 645
BspANI GGCC 2 cut(s) 638, 678
BspCNI CTCAG 1 cut(s) 574
BspLI GGNNCC 2 cut(s) 15, 564
BspMI ACCTGC 1 cut(s) 130
BspOI GCTAGC 1 cut(s) 581
BsrBI CCGCTC 1 cut(s) 269
BsrDI GCAATG 1 cut(s) 267
BsrI ACTGG 1 cut(s) 383
BssECI CCNNGG 3 cut(s) 499, 609, 781
BssMI GATC 2 cut(s) 115, 569
BssT1I CCWWGG 1 cut(s) 609
Bst2UI CCWGG 2 cut(s) 501, 782
Bst4CI ACNGT 2 cut(s) 67, 161
Bst6I CTCTTC 1 cut(s) 296
BstC8I GCNNGC 3 cut(s) 267, 513, 579
BstDEI CTNAG 2 cut(s) 471, 582
BstF5I GGATG 3 cut(s) 466, 712, 777
BstKTI GATC 2 cut(s) 118, 572
BstMAI GTCTC 2 cut(s) 167, 293
BstMBI GATC 2 cut(s) 115, 569
BstNI CCWGG 2 cut(s) 501, 782
BstSCI CCNGG 2 cut(s) 499, 780
BstSFI CTRYAG 1 cut(s) 157
BstV1I GCAGC 3 cut(s) 52, 58, 61
BstX2I RGATCY 1 cut(s) 569
BstYI RGATCY 1 cut(s) 569
BsuRI GGCC 2 cut(s) 638, 678
BtsCI GGATG 3 cut(s) 466, 712, 777
BtsIMutI CAGTG 1 cut(s) 251
BveI ACCTGC 1 cut(s) 130
Cac8I GCNNGC 3 cut(s) 267, 513, 579
CaiI CAGNNNCTG 1 cut(s) 285
Cfr13I GGNCC 2 cut(s) 517, 676
Csp6I GTAC 1 cut(s) 365
CviAII CATG 4 cut(s) 536, 632, 668, 758
CviQI GTAC 1 cut(s) 365
DdeI CTNAG 2 cut(s) 471, 582
DpnI GATC 2 cut(s) 117, 571
DpnII GATC 2 cut(s) 115, 569
DriI GACNNNNNGTC 1 cut(s) 159
EaeI YGGCCR 1 cut(s) 636
Eam1104I CTCTTC 1 cut(s) 296
Eam1105I GACNNNNNGTC 1 cut(s) 159
EarI CTCTTC 1 cut(s) 296
Eco130I CCWWGG 1 cut(s) 609
Eco32I GATATC 1 cut(s) 106
Eco47I GGWCC 1 cut(s) 517
Eco57I CTGAAG 1 cut(s) 743
Eco88I CYCGRG 1 cut(s) 716
EcoRI GAATTC 1 cut(s) 744
EcoRII CCWGG 2 cut(s) 499, 780
EcoRV GATATC 1 cut(s) 106
EcoT14I CCWWGG 1 cut(s) 609
ErhI CCWWGG 1 cut(s) 609
FaeI CATG 4 cut(s) 539, 635, 671, 761
FaiI YATR 9 cut(s) 215, 402, 485, 528, 537, 605, 633, 669, 759
FaqI GGGAC 1 cut(s) 482
FatI CATG 4 cut(s) 535, 631, 667, 757
FauI CCCGC 1 cut(s) 274
Fnu4HI GCNGC 6 cut(s) 29, 38, 41, 44, 47, 50
FokI GGATG 3 cut(s) 473, 699, 764
Fsp4HI GCNGC 6 cut(s) 29, 38, 41, 44, 47, 50
FspBI CTAG 3 cut(s) 359, 419, 578
GluI GCNGC 6 cut(s) 29, 38, 41, 44, 47, 50
HaeIII GGCC 2 cut(s) 638, 678
HapII CCGG 1 cut(s) 206
Hin1II CATG 4 cut(s) 539, 635, 671, 761
HincII GTYRAC 1 cut(s) 133
HindII GTYRAC 1 cut(s) 133
HinfI GANTC 6 cut(s) 172, 334, 390, 444, 475, 768
HpaII CCGG 1 cut(s) 206
Hpy166II GTNNAC 2 cut(s) 63, 133
Hpy188III TCNNGA 8 cut(s) 119, 164, 272, 302, 331, 359, 656, 716
Hpy8I GTNNAC 2 cut(s) 63, 133
Hpy99I CGWCG 1 cut(s) 37
HpyAV CCTTC 2 cut(s) 191, 593
HpyCH4III ACNGT 2 cut(s) 67, 161
HpyCH4IV ACGT 1 cut(s) 129
HpyCH4V TGCA 3 cut(s) 313, 404, 530
HpyF3I CTNAG 2 cut(s) 471, 582
HpySE526I ACGT 1 cut(s) 129
Hsp92II CATG 4 cut(s) 539, 635, 671, 761
Kzo9I GATC 2 cut(s) 115, 569
LmnI GCTCC 5 cut(s) 19, 70, 208, 274, 322
Lsp1109I GCAGC 3 cut(s) 52, 58, 61
LweI GCATC 3 cut(s) 157, 476, 637
MaeI CTAG 3 cut(s) 359, 419, 578
MaeII ACGT 1 cut(s) 129
MaeIII GTNAC 2 cut(s) 147, 479
MalI GATC 2 cut(s) 117, 571
MbiI CCGCTC 1 cut(s) 269
MboI GATC 2 cut(s) 115, 569
MboII GAAGA 6 cut(s) 18, 176, 283, 453, 736, 763
MfeI CAATTG 2 cut(s) 74, 368
MflI RGATCY 1 cut(s) 569
MhlI GDGCHC 1 cut(s) 221
MlsI TGGCCA 1 cut(s) 638
MluCI AATT 9 cut(s) 74, 225, 297, 339, 368, 452, 617, 704, 744
MluNI TGGCCA 1 cut(s) 638
MlyI GAGTC 1 cut(s) 328
MnlI CCTC 8 cut(s) 4, 119, 200, 293, 313, 355, 577, 705
Mox20I TGGCCA 1 cut(s) 638
MscI TGGCCA 1 cut(s) 638
MseI TTAA 2 cut(s) 246, 708
Msp20I TGGCCA 1 cut(s) 638
MspI CCGG 1 cut(s) 206
MspR9I CCNGG 2 cut(s) 501, 782
MunI CAATTG 2 cut(s) 74, 368
MvaI CCWGG 2 cut(s) 501, 782
NdeII GATC 2 cut(s) 115, 569
NheI GCTAGC 1 cut(s) 577
NlaIII CATG 4 cut(s) 539, 635, 671, 761
NlaIV GGNNCC 2 cut(s) 15, 564
NmuCI GTSAC 2 cut(s) 147, 479
PcsI WCGNNNNNNNCGW 1 cut(s) 126
PfeI GAWTC 5 cut(s) 172, 390, 444, 475, 768
PkrI GCNGC 6 cut(s) 30, 39, 42, 45, 48, 51
PleI GAGTC 1 cut(s) 328
PpsI GAGTC 1 cut(s) 328
Psp6I CCWGG 2 cut(s) 499, 780
PspGI CCWGG 2 cut(s) 499, 780
PspN4I GGNNCC 2 cut(s) 15, 564
PspPI GGNCC 2 cut(s) 517, 676
PstNI CAGNNNCTG 1 cut(s) 285
PsuI RGATCY 1 cut(s) 569
RsaI GTAC 1 cut(s) 366
RsaNI GTAC 1 cut(s) 365
SaqAI TTAA 2 cut(s) 246, 708
SatI GCNGC 6 cut(s) 29, 38, 41, 44, 47, 50
Sau3AI GATC 2 cut(s) 115, 569
Sau96I GGNCC 2 cut(s) 517, 676
SchI GAGTC 1 cut(s) 328
ScrFI CCNGG 2 cut(s) 501, 782
SduI GDGCHC 1 cut(s) 221
SfaNI GCATC 3 cut(s) 157, 476, 637
SfcI CTRYAG 1 cut(s) 157
SinI GGWCC 1 cut(s) 517
SmlI CTYRAG 1 cut(s) 623
SmoI CTYRAG 1 cut(s) 623
Sse9I AATT 9 cut(s) 74, 225, 297, 339, 368, 452, 617, 704, 744
SsiI CCGC 6 cut(s) 29, 38, 44, 267, 515, 645
SspMI CTAG 3 cut(s) 359, 419, 578
StyD4I CCNGG 2 cut(s) 499, 780
StyI CCWWGG 1 cut(s) 609
TaaI ACNGT 2 cut(s) 67, 161
TaiI ACGT 1 cut(s) 132
TaqI TCGA 4 cut(s) 120, 165, 697, 766
TasI AATT 9 cut(s) 74, 225, 297, 339, 368, 452, 617, 704, 744
TauI GCSGC 3 cut(s) 31, 40, 46
TfiI GAWTC 5 cut(s) 172, 390, 444, 475, 768
Tru1I TTAA 2 cut(s) 246, 708
Tru9I TTAA 2 cut(s) 246, 708
TscAI CASTG 1 cut(s) 258
TseFI GTSAC 2 cut(s) 147, 479
TseI GCWGC 3 cut(s) 40, 46, 49
Tsp45I GTSAC 2 cut(s) 147, 479
TspDTI ATGAA 4 cut(s) 382, 477, 524, 717
TspRI CASTG 1 cut(s) 258
VpaK11BI GGWCC 1 cut(s) 517
XapI RAATTY 3 cut(s) 617, 704, 744
XbaI TCTAGA 1 cut(s) 358
XspI CTAG 3 cut(s) 359, 419, 578
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.