Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0004833

Physical Location & Seq

Genomic Coordinates Reverse (-)

5809445 .. 5809903

Gene Structure 459 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g10581.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 213 bp

ATGAATGAGGGTTTTATGCAGTGCTCAGCAAACTACAGACCCTTGTCACCGATAAGCTTCTTGGAGCGAGCAGCTGTCATCACTGGCGATAAGCCTTCCGTCGTCTACGGCGGCGTAAGGTATTCGTGGAAGGAGACGCTTCAAAGATGCCTCAACTTCGCTTCCGCTTTGGTCCGGTTAGGAGTATCCCGCCATGATGTTCTCCCAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

71

Amino Acids

7.79

Weight (kDa)

9.23

Isoelectric Point (pI)

28.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMP-binding	PF00501	21 - 67	1e-06	AMP-binding enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004833)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g10580 FvH4_1g10581 FvH4_1g10590
malus_domestica	MD02G1120100.v1.1 MD15G1234100.v1.1
prunus_persica	Prupe.7G178600_v2.0.a1
pyrus_communis	pycom02g09360 pycom06g03660 pycom15g20860
rosa_chinensis	RchiOBHm_Chr1g0343831 RchiOBHm_Chr2g0097661 RchiOBHm_Chr5g0081661
rosa_laevigata	RLG00000016733
rosa_multiflora	Rmu_co8398949.1_g000001 Rmu_sc0003567.1_g000016 Rmu_sc0019235.1_g000003 Rmu_sc0022221.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144620 Rroxscaffold_3G00234410
rosa_rugosa	Rorug02G0068200 Rorug02G0253400 Rorug06G0115300
rosa_samantha	Rh2AG114700 Rh2BG117500 Rh2CG119500 Rh2DG118400 Rh4BG080100 Rh6BG186300 Rh6DG148000
rosa_wichuraiana	Rw0G011160 Rw2G008970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	105
AciI	CCGC	3 cut(s)	111, 165, 190
AgsI	TTSAA	1 cut(s)	143
AluBI	AGCT	3 cut(s)	57, 74, 210
AluI	AGCT	3 cut(s)	57, 74, 210
Alw21I	GWGCWC	1 cut(s)	26
Alw26I	GTCTC	1 cut(s)	128
ApeKI	GCWGC	1 cut(s)	71
AspS9I	GGNCC	1 cut(s)	172
AsuHPI	GGTGA	1 cut(s)	39
AvaII	GGWCC	1 cut(s)	172
Bbv12I	GWGCWC	1 cut(s)	26
BbvI	GCAGC	1 cut(s)	83
BceAI	ACGGC	1 cut(s)	124
BciVI	GTATCC	1 cut(s)	196
BcoDI	GTCTC	1 cut(s)	128
BfmI	CTRYAG	1 cut(s)	34
BfuI	GTATCC	1 cut(s)	196
BisI	GCNGC	2 cut(s)	72, 112
BlpI	GCTNAGC	1 cut(s)	25
BlsI	GCNGC	2 cut(s)	73, 113
Bme18I	GGWCC	1 cut(s)	172
BmgT120I	GGNCC	1 cut(s)	172
BmsI	GCATC	1 cut(s)	137
BoxI	GACNNNNGTC	1 cut(s)	43
Bpu1102I	GCTNAGC	1 cut(s)	25
BsaWI	WCCGGW	1 cut(s)	174
Bse1I	ACTGG	1 cut(s)	88
BseMII	CTCAG	1 cut(s)	39
BseNI	ACTGG	1 cut(s)	88
BseXI	GCAGC	1 cut(s)	83
BsiHKAI	GWGCWC	1 cut(s)	26
BsiSI	CCGG	1 cut(s)	175
BsmAI	GTCTC	1 cut(s)	128
BsmBI	CGTCTC	1 cut(s)	128
Bsp1286I	GDGCHC	1 cut(s)	26
Bsp1720I	GCTNAGC	1 cut(s)	25
BspACI	CCGC	3 cut(s)	111, 165, 190
BspCNI	CTCAG	1 cut(s)	38
BsrI	ACTGG	1 cut(s)	88
BstC8I	GCNNGC	1 cut(s)	69
BstDEI	CTNAG	1 cut(s)	25
BstMAI	GTCTC	1 cut(s)	128
BstPAI	GACNNNNGTC	1 cut(s)	43
BstSFI	CTRYAG	1 cut(s)	34
BstV1I	GCAGC	1 cut(s)	83
BsuI	GTATCC	1 cut(s)	196
BtsI	GCAGTG	1 cut(s)	26
BtsIMutI	CAGTG	2 cut(s)	26, 81
Cac8I	GCNNGC	1 cut(s)	69
Cfr13I	GGNCC	1 cut(s)	172
CseI	GACGC	1 cut(s)	145
CviAII	CATG	1 cut(s)	194
CviJI	RGCY	4 cut(s)	57, 74, 94, 210
CviKI_1	RGCY	4 cut(s)	57, 74, 94, 210
DdeI	CTNAG	1 cut(s)	25
Eco47I	GGWCC	1 cut(s)	172
Esp3I	CGTCTC	1 cut(s)	128
FaeI	CATG	1 cut(s)	197
FaiI	YATR	2 cut(s)	17, 195
FatI	CATG	1 cut(s)	193
FauI	CCCGC	1 cut(s)	197
FblI	GTMKAC	1 cut(s)	105
Fnu4HI	GCNGC	2 cut(s)	72, 112
Fsp4HI	GCNGC	2 cut(s)	72, 112
GluI	GCNGC	2 cut(s)	72, 112
HapII	CCGG	1 cut(s)	175
HgaI	GACGC	1 cut(s)	145
Hin1II	CATG	1 cut(s)	197
HindIII	AAGCTT	1 cut(s)	55
HpaII	CCGG	1 cut(s)	175
HphI	GGTGA	1 cut(s)	39
Hpy166II	GTNNAC	1 cut(s)	106
Hpy8I	GTNNAC	1 cut(s)	106
Hpy99I	CGWCG	1 cut(s)	104
HpyAV	CCTTC	2 cut(s)	105, 124
HpyCH4V	TGCA	1 cut(s)	19
HpyF3I	CTNAG	1 cut(s)	25
Hsp92II	CATG	1 cut(s)	197
LmnI	GCTCC	1 cut(s)	64
LpnPI	CCDG	2 cut(s)	69, 188
Lsp1109I	GCAGC	1 cut(s)	83
LweI	GCATC	1 cut(s)	137
MaeIII	GTNAC	1 cut(s)	45
MhlI	GDGCHC	1 cut(s)	26
MnlI	CCTC	1 cut(s)	161
MspA1I	CMGCKG	1 cut(s)	74
MspI	CCGG	1 cut(s)	175
NlaIII	CATG	1 cut(s)	197
NmuCI	GTSAC	1 cut(s)	45
PkrI	GCNGC	2 cut(s)	73, 113
PshAI	GACNNNNGTC	1 cut(s)	43
PspPI	GGNCC	1 cut(s)	172
PvuII	CAGCTG	1 cut(s)	74
SatI	GCNGC	2 cut(s)	72, 112
Sau96I	GGNCC	1 cut(s)	172
SduI	GDGCHC	1 cut(s)	26
SetI	ASST	4 cut(s)	59, 76, 122, 212
SfaNI	GCATC	1 cut(s)	137
SfcI	CTRYAG	1 cut(s)	34
SgeI	CNNG	8 cut(s)	55, 73, 80, 96, 138, 187, 201, 206
SinI	GGWCC	1 cut(s)	172
SsiI	CCGC	3 cut(s)	111, 165, 190
TauI	GCSGC	1 cut(s)	114
TscAI	CASTG	2 cut(s)	26, 88
TseFI	GTSAC	1 cut(s)	45
TseI	GCWGC	1 cut(s)	71
Tsp45I	GTSAC	1 cut(s)	45
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	88
TspRI	CASTG	2 cut(s)	26, 88
VpaK11BI	GGWCC	1 cut(s)	172
XmiI	GTMKAC	1 cut(s)	105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.