Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0004833

Physical Location & Seq

Genomic Coordinates Reverse (-)

19174412 .. 19179743

Gene Structure 5332 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1234100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1635 bp

ATGAATAAGGCTAGTCTTGTTCAGTGCTCGGCAAACTACATACCCTTGTCGCCTATAAGCTTCTTAGAGCGAGCTGCTGTTGTCCATGGCGATAAGATTTCGATCGTTTACGGTGGAGTGAGATTTTCATGGCAGCAGACCCTTGAAAGATGTCTCAAGGTTGCCTCAGCTTTCGTCCACTTAGGCATATCTCGCCATGATGTTGTTGCAGCTTTTGCACCAAACATTCCAGCACTCTATGAGTTACATTTCAGCATTCCAATGGCAGGAGCAGTCCTTTGTGCACTTAACATTAGGCTGCACGCACCCGCATTAACTTTGATATTACAACAATTGGAAGCCAAAGCCATTCTTGTAGATCATCAGTACCTTGAAGTTGTCCTCCAAGCAGTTGACATTTTGTCCCAATCAAACTCCAACTCCAAGCCACCTCTCCTCATTCTAATCCCAGAATGTGACCAATCATCATCATCTTCTCATATTGATCTTGATCTTCCATTAGGTGCCATAAATTACAATGACCTACAGGAACCAGCAGAACCCGGTTTTCAGATTCTCAGACCCAACAATGAGTGTGACCCGATTTCAGTGAGTTACACTTCTGGGTCAACAGGTAATCCCAAAGGAGTTGTGTACAGCCACAGAGCTGTGTACCTGAATTCACTGGGAGCAATTTTTCAGAGTGACATGAGAAAAATGCCTGTTTTTCTATGGACGGTCGAAATGTTTAGGTGCAATGGATGGTGCTTCCCTTGGGCTGTTGCTGCTCTTGGTGGCACCAATATCTGCCTAAGAAGTGTCTCAGCCAAAGCCATTTTTGAAGCAATTGATCTTCACAAGGTAACACACTTATGTGGTGCACCCTCTATATTAAACATTCTAGCAGATGCCTCGGAAAATGATCAAACTAGGGTTATAAAATCAAGGGTGGAGATTATTGTTGCTGGTGCATTGCCAGCATCGGAGATTCTGATCAAGGTTACAGAATTAGGGTTTAATGTGAGCCATGGATATGGCATGACCGAGGCTCTTGGACCGGCAATTGTCACACCATGCAAACCCAAGTTGGAATCTCAGTACAATCTAATGATGGAAGGTGTTGATGTGAAGGATTTGAATAGTATGGAGAGTGTGCCATATGATGGAAAAACAATGGGGGAGATTATGTTAAGAGGCAACACTTTGATGTTGGGATATCTGAAAAACTCAAACCCTAATCATGAAGTTTTCAAGGGCGGATGGTATAGGACTGGTGATCTGGCAGTTCGGCATTCAGATGGGTACATTCAGATGAAAGATAGGGCAAGGGACATTATAATTTCTGGTGGGGAGTCTATAAGCACACTTGAGGTGGAGGCAGTTTTGCTGACTCATCCACAAGTTTTGGAGGCTGCTGTTGTGGGGAAACATGATGAGGTTTTGGGGGAGACTCCTTGTGCTTTTGTGAAGTTGAAGGAGGGTTTTGGTGGTGGTGGTGAAGAAAGTTGTAAAGAGATTGTGAAGTTTTGTGAGGAGAAATTGCCTGTTTTTATGGTTCCACAAGCTTTCGTGTTTGGGGATTTGCCTAATTCTACTGGGAGAGTACAAAAGTTTGTTCTAAAGAAGAAGGCCAATCTTGTGGGAAGCCAAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

545

Amino Acids

59.26

Weight (kDa)

5.87

Isoelectric Point (pI)

38.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMP-binding	PF00501	22 - 400	3.4e-64	AMP-binding enzyme
AMP-binding_C	PF13193	450 - 522	5.9e-17	AMP-binding enzyme C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004833)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g10580 FvH4_1g10581 FvH4_1g10590
malus_domestica	MD02G1120100.v1.1 MD15G1234100.v1.1
prunus_persica	Prupe.7G178600_v2.0.a1
pyrus_communis	pycom02g09360 pycom06g03660 pycom15g20860
rosa_chinensis	RchiOBHm_Chr1g0343831 RchiOBHm_Chr2g0097661 RchiOBHm_Chr5g0081661
rosa_laevigata	RLG00000016733
rosa_multiflora	Rmu_co8398949.1_g000001 Rmu_sc0003567.1_g000016 Rmu_sc0019235.1_g000003 Rmu_sc0022221.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144620 Rroxscaffold_3G00234410
rosa_rugosa	Rorug02G0068200 Rorug02G0253400 Rorug06G0115300
rosa_samantha	Rh2AG114700 Rh2BG117500 Rh2CG119500 Rh2DG118400 Rh4BG080100 Rh6BG186300 Rh6DG148000
rosa_wichuraiana	Rw0G011160 Rw2G008970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	917, 1316
AccB1I	GGYRCC	2 cut(s)	503, 776
AccB7I	CCANNNNNTGG	1 cut(s)	1142
AciI	CCGC	2 cut(s)	309, 1236
AcsI	RAATTY	1 cut(s)	658
AfaI	GTAC	6 cut(s)	368, 635, 653, 1079, 1283, 1584
AfiI	CCNNNNNNNGG	2 cut(s)	266, 1142
AgsI	TTSAA	6 cut(s)	146, 374, 821, 1117, 1231, 1453
AhdI	GACNNNNNGTC	1 cut(s)	400
AleI	CACNNNNGTG	1 cut(s)	852
AluBI	AGCT	6 cut(s)	60, 74, 170, 212, 647, 1544
AluI	AGCT	6 cut(s)	60, 74, 170, 212, 647, 1544
Alw21I	GWGCWC	3 cut(s)	29, 286, 862
Alw26I	GTCTC	3 cut(s)	158, 805, 1421
Alw44I	GTGCAC	2 cut(s)	282, 858
AoxI	GGCC	1 cut(s)	1608
ApaLI	GTGCAC	2 cut(s)	282, 858
ApeKI	GCWGC	6 cut(s)	74, 133, 209, 298, 764, 1391
ApoI	RAATTY	1 cut(s)	658
AspS9I	GGNCC	1 cut(s)	1034
AsuC2I	CCSGG	1 cut(s)	543
AsuHPI	GGTGA	2 cut(s)	1265, 1487
AvaII	GGWCC	1 cut(s)	1034
BaeGI	GKGCMC	2 cut(s)	286, 862
BanI	GGYRCC	2 cut(s)	503, 776
Bbv12I	GWGCWC	3 cut(s)	29, 286, 862
BbvCI	CCTCAGC	1 cut(s)	166
BbvI	GCAGC	6 cut(s)	61, 145, 221, 285, 751, 1378
BccI	CCATC	5 cut(s)	735, 1084, 1136, 1233, 1271
BcgI	CGANNNNNNTGC	2 cut(s)	873, 907
BclI	TGATCA	2 cut(s)	901, 972
BcnI	CCSGG	1 cut(s)	543
BcoDI	GTCTC	3 cut(s)	158, 805, 1421
BfaI	CTAG	3 cut(s)	12, 881, 909
BfmI	CTRYAG	1 cut(s)	524
BisI	GCNGC	6 cut(s)	75, 134, 210, 299, 765, 1392
BlsI	GCNGC	6 cut(s)	76, 135, 211, 300, 766, 1393
Bme1390I	CCNGG	1 cut(s)	543
Bme18I	GGWCC	1 cut(s)	1034
BmeRI	GACNNNNNGTC	1 cut(s)	400
BmgT120I	GGNCC	1 cut(s)	1034
BmiI	GGNNCC	4 cut(s)	505, 531, 778, 1536
BmrFI	CCNGG	1 cut(s)	543
BmrI	ACTGGG	2 cut(s)	674, 1584
BmsI	GCATC	2 cut(s)	877, 968
BmuI	ACTGGG	2 cut(s)	674, 1584
Bpu10I	CCTNAGC	1 cut(s)	166
BpuEI	CTTGAG	2 cut(s)	140, 1367
BpuMI	CCSGG	1 cut(s)	543
BsaBI	GATNNNNATC	3 cut(s)	101, 489, 971
BsaJI	CCNNGG	5 cut(s)	85, 752, 891, 1006, 1023
BsaXI	ACNNNNNCTCC	4 cut(s)	404, 434, 1151, 1181
Bsc4I	CCNNNNNNNGG	2 cut(s)	266, 1142
Bse118I	RCCGGY	1 cut(s)	1036
Bse1I	ACTGG	3 cut(s)	669, 1255, 1579
Bse3DI	GCAATG	2 cut(s)	742, 950
Bse8I	GATNNNNATC	3 cut(s)	101, 489, 971
BseDI	CCNNGG	5 cut(s)	85, 752, 891, 1006, 1023
BseGI	GGATG	3 cut(s)	746, 1244, 1372
BseJI	GATNNNNATC	3 cut(s)	101, 489, 971
BseLI	CCNNNNNNNGG	2 cut(s)	266, 1142
BseMI	GCAATG	2 cut(s)	742, 950
BseMII	CTCAG	4 cut(s)	180, 571, 816, 1088
BseNI	ACTGG	3 cut(s)	669, 1255, 1579
BseRI	GAGGAG	2 cut(s)	425, 1526
BseSI	GKGCMC	2 cut(s)	286, 862
BseXI	GCAGC	6 cut(s)	61, 145, 221, 285, 751, 1378
BsgI	GTGCAG	1 cut(s)	284
Bsh1285I	CGRYCG	2 cut(s)	105, 720
BshFI	GGCC	1 cut(s)	1610
BshNI	GGYRCC	2 cut(s)	503, 776
BsiEI	CGRYCG	2 cut(s)	105, 720
BsiHKAI	GWGCWC	3 cut(s)	29, 286, 862
BsiSI	CCGG	2 cut(s)	543, 1037
BslFI	GGGAC	2 cut(s)	388, 1322
BslI	CCNNNNNNNGG	2 cut(s)	266, 1142
BsmAI	GTCTC	3 cut(s)	158, 805, 1421
BsmFI	GGGAC	2 cut(s)	388, 1322
BsmI	GAATGC	2 cut(s)	255, 1270
BsnI	GGCC	1 cut(s)	1610
Bsp1286I	GDGCHC	3 cut(s)	29, 286, 862
Bsp1407I	TGTACA	1 cut(s)	633
Bsp143I	GATC	8 cut(s)	102, 358, 484, 490, 829, 901, 972, 1255
Bsp19I	CCATGG	2 cut(s)	85, 1006
BspACI	CCGC	2 cut(s)	309, 1236
BspANI	GGCC	1 cut(s)	1610
BspCNI	CTCAG	4 cut(s)	179, 570, 815, 1087
BspHI	TCATGA	1 cut(s)	1219
BspLI	GGNNCC	4 cut(s)	505, 531, 778, 1536
BspT107I	GGYRCC	2 cut(s)	503, 776
BsrDI	GCAATG	2 cut(s)	742, 950
BsrFI	RCCGGY	1 cut(s)	1036
BsrGI	TGTACA	1 cut(s)	633
BsrI	ACTGG	3 cut(s)	669, 1255, 1579
BssAI	RCCGGY	1 cut(s)	1036
BssECI	CCNNGG	5 cut(s)	85, 752, 891, 1006, 1023
BssMI	GATC	8 cut(s)	102, 358, 484, 490, 829, 901, 972, 1255
BssT1I	CCWWGG	3 cut(s)	85, 752, 1006
Bst4CI	ACNGT	2 cut(s)	113, 718
BstAPI	GCANNNNNTGC	1 cut(s)	215
BstAUI	TGTACA	1 cut(s)	633
BstC8I	GCNNGC	3 cut(s)	72, 303, 957
BstDEI	CTNAG	7 cut(s)	64, 166, 181, 557, 791, 802, 1074
BstDSI	CCRYGG	2 cut(s)	85, 1006
BstF5I	GGATG	3 cut(s)	746, 1244, 1372
BstKTI	GATC	8 cut(s)	105, 361, 487, 493, 832, 904, 975, 1258
BstMAI	GTCTC	3 cut(s)	158, 805, 1421
BstMBI	GATC	8 cut(s)	102, 358, 484, 490, 829, 901, 972, 1255
BstMCI	CGRYCG	2 cut(s)	105, 720
BstMWI	GCNNNNNNNGC	4 cut(s)	192, 215, 764, 956
BstSCI	CCNGG	1 cut(s)	541
BstSFI	CTRYAG	1 cut(s)	524
BstSLI	GKGCMC	2 cut(s)	286, 862
BstV1I	GCAGC	6 cut(s)	61, 145, 221, 285, 751, 1378
BstXI	CCANNNNNNTGG	2 cut(s)	1013, 1618
BsuRI	GGCC	1 cut(s)	1610
BtgI	CCRYGG	2 cut(s)	85, 1006
BtsCI	GGATG	3 cut(s)	746, 1244, 1372
BtsIMutI	CAGTG	3 cut(s)	29, 594, 662
Cac8I	GCNNGC	3 cut(s)	72, 303, 957
CciI	TCATGA	1 cut(s)	1219
Cfr10I	RCCGGY	1 cut(s)	1036
Cfr13I	GGNCC	1 cut(s)	1034
Csp6I	GTAC	6 cut(s)	367, 634, 652, 1078, 1282, 1583
CspCI	CAANNNNNGTGG	2 cut(s)	1365, 1400
CviAII	CATG	9 cut(s)	86, 129, 197, 688, 1007, 1018, 1053, 1220, 1409
CviQI	GTAC	6 cut(s)	367, 634, 652, 1078, 1282, 1583
DdeI	CTNAG	7 cut(s)	64, 166, 181, 557, 791, 802, 1074
DpnI	GATC	8 cut(s)	104, 360, 486, 492, 831, 903, 974, 1257
DpnII	GATC	8 cut(s)	102, 358, 484, 490, 829, 901, 972, 1255
DriI	GACNNNNNGTC	1 cut(s)	400
Eam1105I	GACNNNNNGTC	1 cut(s)	400
EciI	GGCGGA	1 cut(s)	1251
Eco130I	CCWWGG	3 cut(s)	85, 752, 1006
Eco32I	GATATC	1 cut(s)	1196
Eco47I	GGWCC	1 cut(s)	1034
EcoRI	GAATTC	1 cut(s)	658
EcoRV	GATATC	1 cut(s)	1196
EcoT14I	CCWWGG	3 cut(s)	85, 752, 1006
ErhI	CCWWGG	3 cut(s)	85, 752, 1006
FaeI	CATG	9 cut(s)	89, 132, 200, 691, 1010, 1021, 1056, 1223, 1412
FalI	AAGNNNNNCTT	2 cut(s)	336, 368
FaqI	GGGAC	2 cut(s)	388, 1322
FatI	CATG	9 cut(s)	85, 128, 196, 687, 1006, 1017, 1052, 1219, 1408
FauI	CCCGC	1 cut(s)	316
FauNDI	CATATG	1 cut(s)	1138
FbaI	TGATCA	2 cut(s)	901, 972
Fnu4HI	GCNGC	6 cut(s)	75, 134, 210, 299, 765, 1392
FokI	GGATG	3 cut(s)	753, 1251, 1359
Fsp4HI	GCNGC	6 cut(s)	75, 134, 210, 299, 765, 1392
FspBI	CTAG	3 cut(s)	12, 881, 909
GluI	GCNGC	6 cut(s)	75, 134, 210, 299, 765, 1392
HaeIII	GGCC	1 cut(s)	1610
HapII	CCGG	2 cut(s)	543, 1037
Hin1II	CATG	9 cut(s)	89, 132, 200, 691, 1010, 1021, 1056, 1223, 1412
HincII	GTYRAC	2 cut(s)	394, 609
HindII	GTYRAC	2 cut(s)	394, 609
HindIII	AAGCTT	2 cut(s)	58, 1542
HinfI	GANTC	6 cut(s)	553, 967, 1070, 1331, 1369, 1429
HpaII	CCGG	2 cut(s)	543, 1037
HphI	GGTGA	2 cut(s)	1265, 1487
Hpy166II	GTNNAC	8 cut(s)	109, 178, 284, 394, 609, 634, 652, 860
Hpy188I	TCNGA	9 cut(s)	552, 560, 681, 895, 964, 972, 1200, 1276, 1290
Hpy188III	TCNNGA	2 cut(s)	488, 1220
Hpy8I	GTNNAC	8 cut(s)	109, 178, 284, 394, 609, 634, 652, 860
HpyAV	CCTTC	4 cut(s)	1088, 1102, 1447, 1600
HpyCH4III	ACNGT	2 cut(s)	113, 718
HpyCH4V	TGCA	8 cut(s)	209, 218, 284, 301, 735, 860, 950, 1056
HpyF10VI	GCNNNNNNNGC	4 cut(s)	192, 215, 764, 956
HpyF3I	CTNAG	7 cut(s)	64, 166, 181, 557, 791, 802, 1074
Hsp92II	CATG	9 cut(s)	89, 132, 200, 691, 1010, 1021, 1056, 1223, 1412
Ksp22I	TGATCA	2 cut(s)	901, 972
Kzo9I	GATC	8 cut(s)	102, 358, 484, 490, 829, 901, 972, 1255
LmnI	GCTCC	2 cut(s)	269, 668
Lsp1109I	GCAGC	6 cut(s)	61, 145, 221, 285, 751, 1378
LweI	GCATC	2 cut(s)	877, 968
MaeI	CTAG	3 cut(s)	12, 881, 909
MaeIII	GTNAC	8 cut(s)	243, 455, 575, 593, 683, 841, 979, 1045
MalI	GATC	8 cut(s)	104, 360, 486, 492, 831, 903, 974, 1257
MboI	GATC	8 cut(s)	102, 358, 484, 490, 829, 901, 972, 1255
MboII	GAAGA	5 cut(s)	465, 485, 824, 1490, 1615
MfeI	CAATTG	3 cut(s)	332, 825, 1041
MhlI	GDGCHC	3 cut(s)	29, 286, 862
MlyI	GAGTC	3 cut(s)	1340, 1363, 1423
MmeI	TCCRAC	2 cut(s)	441, 1047
MseI	TTAA	5 cut(s)	288, 314, 872, 996, 1169
MslI	CAYNNNNRTG	7 cut(s)	260, 850, 852, 1011, 1184, 1275, 1289
MspI	CCGG	2 cut(s)	543, 1037
MspR9I	CCNGG	1 cut(s)	543
MunI	CAATTG	3 cut(s)	332, 825, 1041
Mva1269I	GAATGC	2 cut(s)	255, 1270
MwoI	GCNNNNNNNGC	4 cut(s)	192, 215, 764, 956
NciI	CCSGG	1 cut(s)	543
NcoI	CCATGG	2 cut(s)	85, 1006
NdeI	CATATG	1 cut(s)	1138
NdeII	GATC	8 cut(s)	102, 358, 484, 490, 829, 901, 972, 1255
NlaIII	CATG	9 cut(s)	89, 132, 200, 691, 1010, 1021, 1056, 1223, 1412
NlaIV	GGNNCC	4 cut(s)	505, 531, 778, 1536
NmeAIII	GCCGAG	1 cut(s)	8
NmuCI	GTSAC	4 cut(s)	455, 575, 683, 1045
OliI	CACNNNNGTG	1 cut(s)	852
PagI	TCATGA	1 cut(s)	1219
PctI	GAATGC	2 cut(s)	255, 1270
PfeI	GAWTC	3 cut(s)	553, 967, 1070
PflMI	CCANNNNNTGG	1 cut(s)	1142
PkrI	GCNGC	6 cut(s)	76, 135, 211, 300, 766, 1393
Ple19I	CGATCG	1 cut(s)	105
PleI	GAGTC	3 cut(s)	1339, 1363, 1423
PpsI	GAGTC	3 cut(s)	1339, 1363, 1423
PsiI	TTATAA	2 cut(s)	917, 1316
PspN4I	GGNNCC	4 cut(s)	505, 531, 778, 1536
PspPI	GGNCC	1 cut(s)	1034
PvuI	CGATCG	1 cut(s)	105
RsaI	GTAC	6 cut(s)	368, 635, 653, 1079, 1283, 1584
RsaNI	GTAC	6 cut(s)	367, 634, 652, 1078, 1282, 1583
RseI	CAYNNNNRTG	7 cut(s)	260, 850, 852, 1011, 1184, 1275, 1289
SaqAI	TTAA	5 cut(s)	288, 314, 872, 996, 1169
SatI	GCNGC	6 cut(s)	75, 134, 210, 299, 765, 1392
Sau3AI	GATC	8 cut(s)	102, 358, 484, 490, 829, 901, 972, 1255
Sau96I	GGNCC	1 cut(s)	1034
SchI	GAGTC	3 cut(s)	1340, 1363, 1423
ScrFI	CCNGG	1 cut(s)	543
SduI	GDGCHC	3 cut(s)	29, 286, 862
SfaNI	GCATC	2 cut(s)	877, 968
SfcI	CTRYAG	1 cut(s)	524
SinI	GGWCC	1 cut(s)	1034
SmiMI	CAYNNNNRTG	7 cut(s)	260, 850, 852, 1011, 1184, 1275, 1289
SmlI	CTYRAG	2 cut(s)	155, 1346
SmoI	CTYRAG	2 cut(s)	155, 1346
SsiI	CCGC	2 cut(s)	309, 1236
SspMI	CTAG	3 cut(s)	12, 881, 909
StyD4I	CCNGG	1 cut(s)	541
StyI	CCWWGG	3 cut(s)	85, 752, 1006
TaaI	ACNGT	2 cut(s)	113, 718
TaqI	TCGA	2 cut(s)	101, 720
TaqII	GACCGA	1 cut(s)	1037
TatI	WGTACW	3 cut(s)	633, 1077, 1582
TfiI	GAWTC	3 cut(s)	553, 967, 1070
Tru1I	TTAA	5 cut(s)	288, 314, 872, 996, 1169
Tru9I	TTAA	5 cut(s)	288, 314, 872, 996, 1169
TscAI	CASTG	3 cut(s)	29, 594, 669
TseFI	GTSAC	4 cut(s)	455, 575, 683, 1045
TseI	GCWGC	6 cut(s)	74, 133, 209, 298, 764, 1391
Tsp45I	GTSAC	4 cut(s)	455, 575, 683, 1045
TspDTI	ATGAA	4 cut(s)	17, 117, 1236, 1307
TspRI	CASTG	3 cut(s)	29, 594, 669
Van91I	CCANNNNNTGG	1 cut(s)	1142
VneI	GTGCAC	2 cut(s)	282, 858
VpaK11BI	GGWCC	1 cut(s)	1034
XapI	RAATTY	1 cut(s)	658
XspI	CTAG	3 cut(s)	12, 881, 909

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.