Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0004833

Physical Location & Seq

Genomic Coordinates Forward (+)

13997393 .. 13999446

Gene Structure 2054 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG080100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGGAGGGTGCGATTAGGTGCTCCACCAACTATGTTCCTCTTTCTCCGATCAGCTTCCTGGAGCGCTCAGTCATAGTCTACAGAGATAGACCCTCTATTATGTATGGAGACATCGTCTACACTTGGAGACAGACACTTGAACAATGCACCAGACTTGCTTCTGCTCTTGCCCAACTTCGAATTTCTCAAGGCGATGTGGTACTTGCAAAAGCACAGCTTTGCCTCTATGTTTATTCTGAAGGCATTCACTTACAAACATTGTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

88

Amino Acids

10.03

Weight (kDa)

7.71

Isoelectric Point (pI)

35.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004833)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g10580 FvH4_1g10581 FvH4_1g10590
malus_domestica	MD02G1120100.v1.1 MD15G1234100.v1.1
prunus_persica	Prupe.7G178600_v2.0.a1
pyrus_communis	pycom02g09360 pycom06g03660 pycom15g20860
rosa_chinensis	RchiOBHm_Chr1g0343831 RchiOBHm_Chr2g0097661 RchiOBHm_Chr5g0081661
rosa_laevigata	RLG00000016733
rosa_multiflora	Rmu_co8398949.1_g000001 Rmu_sc0003567.1_g000016 Rmu_sc0019235.1_g000003 Rmu_sc0022221.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144620 Rroxscaffold_3G00234410
rosa_rugosa	Rorug02G0068200 Rorug02G0253400 Rorug06G0115300
rosa_samantha	Rh2AG114700 Rh2BG117500 Rh2CG119500 Rh2DG118400 Rh4BG080100 Rh6BG186300 Rh6DG148000
rosa_wichuraiana	Rw0G011160 Rw2G008970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	78, 117
AcsI	RAATTY	1 cut(s)	180
AcuI	CTGAAG	1 cut(s)	258
AfaI	GTAC	1 cut(s)	201
AfeI	AGCGCT	1 cut(s)	65
AgsI	TTSAA	1 cut(s)	140
AjnI	CCWGG	1 cut(s)	57
AluBI	AGCT	2 cut(s)	54, 217
AluI	AGCT	2 cut(s)	54, 217
Alw21I	GWGCWC	1 cut(s)	23
Alw26I	GTCTC	2 cut(s)	102, 121
Aor51HI	AGCGCT	1 cut(s)	65
ApoI	RAATTY	1 cut(s)	180
Asp700I	GAANNNNTTC	1 cut(s)	243
AspLEI	GCGC	1 cut(s)	66
AsuII	TTCGAA	1 cut(s)	178
Bbv12I	GWGCWC	1 cut(s)	23
BciT130I	CCWGG	1 cut(s)	59
BcoDI	GTCTC	2 cut(s)	102, 121
BfmI	CTRYAG	1 cut(s)	79
BfoI	RGCGCY	1 cut(s)	67
Bme1390I	CCNGG	1 cut(s)	59
BmrFI	CCNGG	1 cut(s)	59
BpmI	CTGGAG	1 cut(s)	80
Bpu14I	TTCGAA	1 cut(s)	178
BpuEI	CTTGAG	1 cut(s)	171
BsaXI	ACNNNNNCTCC	2 cut(s)	99, 129
BseBI	CCWGG	1 cut(s)	59
BseMII	CTCAG	1 cut(s)	81
BsiHKAI	GWGCWC	1 cut(s)	23
BsmAI	GTCTC	2 cut(s)	102, 121
BsmI	GAATGC	1 cut(s)	243
Bsp119I	TTCGAA	1 cut(s)	178
Bsp1286I	GDGCHC	1 cut(s)	23
Bsp143I	GATC	1 cut(s)	48
BspCNI	CTCAG	1 cut(s)	80
BspT104I	TTCGAA	1 cut(s)	178
BssMI	GATC	1 cut(s)	48
Bst2UI	CCWGG	1 cut(s)	59
BstBI	TTCGAA	1 cut(s)	178
BstDEI	CTNAG	1 cut(s)	67
BstH2I	RGCGCY	1 cut(s)	67
BstHHI	GCGC	1 cut(s)	66
BstKTI	GATC	1 cut(s)	51
BstMAI	GTCTC	2 cut(s)	102, 121
BstMBI	GATC	1 cut(s)	48
BstNI	CCWGG	1 cut(s)	59
BstSCI	CCNGG	1 cut(s)	57
BstSFI	CTRYAG	1 cut(s)	79
BtgZI	GCGATG	1 cut(s)	207
CfoI	GCGC	1 cut(s)	66
Csp6I	GTAC	1 cut(s)	200
CviJI	RGCY	2 cut(s)	54, 217
CviKI_1	RGCY	2 cut(s)	54, 217
CviQI	GTAC	1 cut(s)	200
DdeI	CTNAG	1 cut(s)	67
DpnI	GATC	1 cut(s)	50
DpnII	GATC	1 cut(s)	48
Eco47III	AGCGCT	1 cut(s)	65
Eco57I	CTGAAG	1 cut(s)	258
EcoRII	CCWGG	1 cut(s)	57
FaiI	YATR	5 cut(s)	33, 74, 101, 105, 228
FalI	AAGNNNNNCTT	2 cut(s)	201, 233
FblI	GTMKAC	2 cut(s)	78, 117
GlaI	GCGC	1 cut(s)	65
GsuI	CTGGAG	1 cut(s)	80
HaeII	RGCGCY	1 cut(s)	67
HhaI	GCGC	1 cut(s)	66
Hin6I	GCGC	1 cut(s)	64
HinP1I	GCGC	1 cut(s)	64
Hpy166II	GTNNAC	2 cut(s)	79, 118
Hpy188I	TCNGA	2 cut(s)	48, 238
Hpy8I	GTNNAC	2 cut(s)	79, 118
HpyAV	CCTTC	1 cut(s)	233
HpyCH4V	TGCA	2 cut(s)	147, 206
HpyF3I	CTNAG	1 cut(s)	67
HspAI	GCGC	1 cut(s)	64
Kzo9I	GATC	1 cut(s)	48
LmnI	GCTCC	2 cut(s)	26, 61
LpnPI	CCDG	3 cut(s)	44, 71, 163
MalI	GATC	1 cut(s)	50
MboI	GATC	1 cut(s)	48
MhlI	GDGCHC	1 cut(s)	23
MluCI	AATT	1 cut(s)	180
MnlI	CCTC	3 cut(s)	48, 103, 233
MroXI	GAANNNNTTC	1 cut(s)	243
MspR9I	CCNGG	1 cut(s)	59
Mva1269I	GAATGC	1 cut(s)	243
MvaI	CCWGG	1 cut(s)	59
NdeII	GATC	1 cut(s)	48
NspV	TTCGAA	1 cut(s)	178
PctI	GAATGC	1 cut(s)	243
PdmI	GAANNNNTTC	1 cut(s)	243
PflFI	GACNNNGTC	1 cut(s)	113
PfoI	TCCNGGA	1 cut(s)	57
Psp6I	CCWGG	1 cut(s)	57
PspGI	CCWGG	1 cut(s)	57
PsyI	GACNNNGTC	1 cut(s)	113
RsaI	GTAC	1 cut(s)	201
RsaNI	GTAC	1 cut(s)	200
Sau3AI	GATC	1 cut(s)	48
ScrFI	CCNGG	1 cut(s)	59
SduI	GDGCHC	1 cut(s)	23
SetI	ASST	3 cut(s)	20, 56, 219
SfcI	CTRYAG	1 cut(s)	79
SfuI	TTCGAA	1 cut(s)	178
SgeI	CNNG	9 cut(s)	70, 71, 135, 149, 162, 167, 179, 200, 215
SmlI	CTYRAG	1 cut(s)	186
SmoI	CTYRAG	1 cut(s)	186
Sse9I	AATT	1 cut(s)	180
StyD4I	CCNGG	1 cut(s)	57
TaqI	TCGA	1 cut(s)	178
TasI	AATT	1 cut(s)	180
Tth111I	GACNNNGTC	1 cut(s)	113
XapI	RAATTY	1 cut(s)	180
XmiI	GTMKAC	2 cut(s)	78, 117
XmnI	GAANNNNTTC	1 cut(s)	243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.