Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0004833

Physical Location & Seq

Genomic Coordinates Forward (+)

4603425 .. 4603649

Gene Structure 225 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g03660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 225 bp

ATGGTGGTAGGGCGAGACATCGATGATTTGCCGAAGAACAATGCCAACTACACGGCATTAACGCCGCTGTGGTTTCTGGATAGAGCAGCTCTGTTGCACCGCACTAGAATATTCATGATCCATGGATCGATTCGCTGCACATGGCAGCAGACTGACCAGCGGTGCCGCCGTTTGGCCTCTGCTTTTGCGAAGCGCTCCATCGGCCTCGGTACCACAGTAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003987 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005975 GO:0006081 GO:0006082 GO:0006083 GO:0006097 GO:0006629 GO:0006631 GO:0008150 GO:0008152 GO:0009987 GO:0016405 GO:0016874 GO:0016877 GO:0016878 GO:0016999 GO:0017144 GO:0019605 GO:0019752 GO:0032787 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044262 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046459 GO:0046487 GO:0047760 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

75

Amino Acids

8.46

Weight (kDa)

10.75

Isoelectric Point (pI)

33.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004833)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g10580 FvH4_1g10581 FvH4_1g10590
malus_domestica	MD02G1120100.v1.1 MD15G1234100.v1.1
prunus_persica	Prupe.7G178600_v2.0.a1
pyrus_communis	pycom02g09360 pycom06g03660 pycom15g20860
rosa_chinensis	RchiOBHm_Chr1g0343831 RchiOBHm_Chr2g0097661 RchiOBHm_Chr5g0081661
rosa_laevigata	RLG00000016733
rosa_multiflora	Rmu_co8398949.1_g000001 Rmu_sc0003567.1_g000016 Rmu_sc0019235.1_g000003 Rmu_sc0022221.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144620 Rroxscaffold_3G00234410
rosa_rugosa	Rorug02G0068200 Rorug02G0253400 Rorug06G0115300
rosa_samantha	Rh2AG114700 Rh2BG117500 Rh2CG119500 Rh2DG118400 Rh4BG080100 Rh6BG186300 Rh6DG148000
rosa_wichuraiana	Rw0G011160 Rw2G008970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	209
AccB1I	GGYRCC	2 cut(s)	162, 209
AciI	CCGC	4 cut(s)	65, 100, 160, 166
AclWI	GGATC	2 cut(s)	112, 133
AfaI	GTAC	1 cut(s)	211
AfeI	AGCGCT	1 cut(s)	194
AfiI	CCNNNNNNNGG	1 cut(s)	172
AluBI	AGCT	1 cut(s)	89
AluI	AGCT	1 cut(s)	89
Alw26I	GTCTC	1 cut(s)	9
AlwI	GGATC	2 cut(s)	112, 133
Aor51HI	AGCGCT	1 cut(s)	194
AoxI	GGCC	2 cut(s)	174, 202
ApeKI	GCWGC	3 cut(s)	86, 135, 145
Asp718I	GGTACC	1 cut(s)	209
AspLEI	GCGC	1 cut(s)	195
BaeI	ACNNNNGTAYC	1 cut(s)	201
BanI	GGYRCC	2 cut(s)	162, 209
BbvI	GCAGC	3 cut(s)	98, 122, 157
BccI	CCATC	1 cut(s)	206
BceAI	ACGGC	2 cut(s)	69, 153
BcoDI	GTCTC	1 cut(s)	9
BfaI	CTAG	1 cut(s)	105
BfoI	RGCGCY	1 cut(s)	196
BisI	GCNGC	5 cut(s)	65, 87, 136, 146, 166
BlsI	GCNGC	5 cut(s)	66, 88, 137, 147, 167
BmiI	GGNNCC	2 cut(s)	164, 211
Bsa29I	ATCGAT	2 cut(s)	21, 128
BsaJI	CCNNGG	2 cut(s)	121, 205
Bsc4I	CCNNNNNNNGG	1 cut(s)	172
BseCI	ATCGAT	2 cut(s)	21, 128
BseDI	CCNNGG	2 cut(s)	121, 205
BseLI	CCNNNNNNNGG	1 cut(s)	172
BseXI	GCAGC	3 cut(s)	98, 122, 157
BsgI	GTGCAG	1 cut(s)	121
BshFI	GGCC	2 cut(s)	176, 204
BshNI	GGYRCC	2 cut(s)	162, 209
BshVI	ATCGAT	2 cut(s)	21, 128
BslI	CCNNNNNNNGG	1 cut(s)	172
BsmAI	GTCTC	1 cut(s)	9
BsnI	GGCC	2 cut(s)	176, 204
Bsp143I	GATC	2 cut(s)	117, 125
Bsp19I	CCATGG	1 cut(s)	121
BspACI	CCGC	4 cut(s)	65, 100, 160, 166
BspANI	GGCC	2 cut(s)	176, 204
BspDI	ATCGAT	2 cut(s)	21, 128
BspHI	TCATGA	1 cut(s)	114
BspLI	GGNNCC	2 cut(s)	164, 211
BspPI	GGATC	2 cut(s)	112, 133
BspT107I	GGYRCC	2 cut(s)	162, 209
BssECI	CCNNGG	2 cut(s)	121, 205
BssMI	GATC	2 cut(s)	117, 125
BssT1I	CCWWGG	1 cut(s)	121
Bst4CI	ACNGT	1 cut(s)	217
BstDSI	CCRYGG	1 cut(s)	121
BstH2I	RGCGCY	1 cut(s)	196
BstHHI	GCGC	1 cut(s)	195
BstKTI	GATC	2 cut(s)	120, 128
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	2 cut(s)	117, 125
BstMWI	GCNNNNNNNGC	1 cut(s)	201
BstV1I	GCAGC	3 cut(s)	98, 122, 157
Bsu15I	ATCGAT	2 cut(s)	21, 128
BsuRI	GGCC	2 cut(s)	176, 204
BsuTUI	ATCGAT	2 cut(s)	21, 128
BtgI	CCRYGG	1 cut(s)	121
CciI	TCATGA	1 cut(s)	114
CfoI	GCGC	1 cut(s)	195
ClaI	ATCGAT	2 cut(s)	21, 128
Csp6I	GTAC	1 cut(s)	210
CviAII	CATG	3 cut(s)	115, 122, 141
CviJI	RGCY	3 cut(s)	89, 176, 204
CviKI_1	RGCY	3 cut(s)	89, 176, 204
CviQI	GTAC	1 cut(s)	210
DpnI	GATC	2 cut(s)	119, 127
DpnII	GATC	2 cut(s)	117, 125
Eco130I	CCWWGG	1 cut(s)	121
Eco47III	AGCGCT	1 cut(s)	194
EcoT14I	CCWWGG	1 cut(s)	121
ErhI	CCWWGG	1 cut(s)	121
FaeI	CATG	3 cut(s)	118, 125, 144
FaiI	YATR	3 cut(s)	116, 123, 142
FatI	CATG	3 cut(s)	114, 121, 140
Fnu4HI	GCNGC	5 cut(s)	65, 87, 136, 146, 166
Fsp4HI	GCNGC	5 cut(s)	65, 87, 136, 146, 166
FspBI	CTAG	1 cut(s)	105
GlaI	GCGC	1 cut(s)	194
GluI	GCNGC	5 cut(s)	65, 87, 136, 146, 166
HaeII	RGCGCY	1 cut(s)	196
HaeIII	GGCC	2 cut(s)	176, 204
HhaI	GCGC	1 cut(s)	195
Hin1II	CATG	3 cut(s)	118, 125, 144
Hin6I	GCGC	1 cut(s)	193
HinP1I	GCGC	1 cut(s)	193
HinfI	GANTC	1 cut(s)	130
Hpy188III	TCNNGA	2 cut(s)	77, 115
HpyCH4III	ACNGT	1 cut(s)	217
HpyCH4V	TGCA	2 cut(s)	97, 138
HpyF10VI	GCNNNNNNNGC	1 cut(s)	201
Hsp92II	CATG	3 cut(s)	118, 125, 144
HspAI	GCGC	1 cut(s)	193
KpnI	GGTACC	1 cut(s)	213
Kzo9I	GATC	2 cut(s)	117, 125
LmnI	GCTCC	1 cut(s)	200
LpnPI	CCDG	2 cut(s)	62, 170
Lsp1109I	GCAGC	3 cut(s)	98, 122, 157
MaeI	CTAG	1 cut(s)	105
MaeIII	GTNAC	1 cut(s)	217
MalI	GATC	2 cut(s)	119, 127
MboI	GATC	2 cut(s)	117, 125
MboII	GAAGA	1 cut(s)	46
MnlI	CCTC	2 cut(s)	187, 215
MseI	TTAA	2 cut(s)	59, 223
MspA1I	CMGCKG	2 cut(s)	67, 160
MwoI	GCNNNNNNNGC	1 cut(s)	201
NcoI	CCATGG	1 cut(s)	121
NdeII	GATC	2 cut(s)	117, 125
NlaIII	CATG	3 cut(s)	118, 125, 144
NlaIV	GGNNCC	2 cut(s)	164, 211
PagI	TCATGA	1 cut(s)	114
PfeI	GAWTC	1 cut(s)	130
PkrI	GCNGC	5 cut(s)	66, 88, 137, 147, 167
PspN4I	GGNNCC	2 cut(s)	164, 211
RsaI	GTAC	1 cut(s)	211
RsaNI	GTAC	1 cut(s)	210
SaqAI	TTAA	2 cut(s)	59, 223
SatI	GCNGC	5 cut(s)	65, 87, 136, 146, 166
Sau3AI	GATC	2 cut(s)	117, 125
SetI	ASST	1 cut(s)	91
SgeI	CNNG	9 cut(s)	26, 64, 89, 117, 127, 134, 153, 169, 218
SsiI	CCGC	4 cut(s)	65, 100, 160, 166
SspI	AATATT	1 cut(s)	111
SspMI	CTAG	1 cut(s)	105
StyI	CCWWGG	1 cut(s)	121
TaaI	ACNGT	1 cut(s)	217
TaqI	TCGA	2 cut(s)	21, 128
TauI	GCSGC	2 cut(s)	67, 168
TfiI	GAWTC	1 cut(s)	130
Tru1I	TTAA	2 cut(s)	59, 223
Tru9I	TTAA	2 cut(s)	59, 223
TseI	GCWGC	3 cut(s)	86, 135, 145
TspDTI	ATGAA	1 cut(s)	103
XspI	CTAG	1 cut(s)	105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.