Rmu_co8398949.1_g000001

butyrate--CoA ligase AAE11, peroxisomal-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8398949.1
Physical Location & Seq
Reverse (-)
2 .. 980
979 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8398949.1_g000001.1.cds

Sequence Viewer

Length: 890 bp
atgcttcccaaatgcgatgccaattacgcagctctcacccctacaactttcttgaagagagccgctgcgttttattccaaccgtacttccctcatctacgaaggaactcgcttcacatggcgccaaacacatgaccgttgctgccgtctcgcttcttcccttctttcccttaacattgccaaacacgacgtggtttcggtgttggctcccaatattcctgcattgtatgagatgcatttcgccgtgccgatggctggtgcggtgctcaacaccatcaactctcgacttgatcccaaaaacatcacctccattctgaaacactctggcgccaaggtcttctttgtcgactaccagtacgtccctcaggcgcgtgaggcactcaggattctcatgatgagctctcagccatccatgatgccgttggtcatcgtgatcgacgacatcgactcacccaccggagttcggttgggagaactcgagtacgagcagctcatccacaagggcaatccccggttcgtcggcatcgacgtcgccgacgaatgggacccaatttccttgaattacacttctggcacaacttctgaaccaaaaggtgttgtgtacagccacagaggtgcttacttgagcactctgagcctaattctgggttgggaaatggggggcgagcctgtttatctatggacgctccctatgttccattgcaacggctggaccttcacctggggcgtggcggcacgcggtgggaccaacgtctgcctccgcaacaccaccgcgtacgacatctaccgcaacattaaaagacaccacgtgacccatatgtgttgcgctcccatcattttcaacatactcctcgaggccaagccccacgagcgctgccacatcacaaaccc

Protein Analysis

297

Amino Acids

33.39

Weight (kDa)

8.38

Isoelectric Point (pI)

39.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 531
AbsI CCTCGAGG 1 cut(s) 851
AccB1I GGYRCC 2 cut(s) 120, 326
AccI GTMKAC 1 cut(s) 345
AccII CGCG 3 cut(s) 370, 738, 773
AciI CCGC 7 cut(s) 63, 260, 731, 738, 760, 771, 787
AclWI GGATC 1 cut(s) 284
AcvI CACGTG 1 cut(s) 808
AcyI GRCGYC 3 cut(s) 121, 327, 528
AdeI CACNNNGTG 3 cut(s) 190, 740, 808
AfaI GTAC 5 cut(s) 85, 356, 482, 602, 776
AfeI AGCGCT 1 cut(s) 872
AfiI CCNNNNNNNGG 5 cut(s) 254, 462, 540, 643, 720
AgsI TTSAA 3 cut(s) 55, 559, 841
AjiI CACGTC 1 cut(s) 190
AjnI CCWGG 1 cut(s) 719
AleI CACNNNNGTG 1 cut(s) 612
AluBI AGCT 3 cut(s) 32, 399, 490
AluI AGCT 3 cut(s) 32, 399, 490
Alw21I GWGCWC 3 cut(s) 267, 401, 629
Alw26I GTCTC 1 cut(s) 152
AlwI GGATC 1 cut(s) 284
Ama87I CYCGRG 2 cut(s) 476, 851
Aor51HI AGCGCT 1 cut(s) 872
AoxI GGCC 1 cut(s) 855
ApeKI GCWGC 5 cut(s) 29, 65, 141, 487, 873
AspLEI GCGC 5 cut(s) 123, 329, 370, 827, 873
AspS9I GGNCC 3 cut(s) 544, 711, 744
AsuC2I CCSGG 1 cut(s) 511
AsuHPI GGTGA 4 cut(s) 28, 295, 441, 709
AvaI CYCGRG 2 cut(s) 476, 851
AvaII GGWCC 3 cut(s) 544, 711, 744
AxyI CCTNAGG 1 cut(s) 363
BanI GGYRCC 2 cut(s) 120, 326
BanII GRGCYC 1 cut(s) 401
BauI CACGAG 1 cut(s) 866
BbrPI CACGTG 1 cut(s) 808
BbsI GAAGAC 1 cut(s) 328
Bbv12I GWGCWC 3 cut(s) 267, 401, 629
BbvI GCAGC 5 cut(s) 41, 52, 128, 499, 860
BccI CCATC 4 cut(s) 244, 281, 415, 839
BceAI ACGGC 4 cut(s) 129, 227, 403, 721
BcgI CGANNNNNNTGC 2 cut(s) 511, 545
BciT130I CCWGG 1 cut(s) 721
BcnI CCSGG 1 cut(s) 511
BcoDI GTCTC 1 cut(s) 152
BfoI RGCGCY 3 cut(s) 124, 330, 874
BisI GCNGC 7 cut(s) 30, 63, 66, 142, 488, 732, 874
BlsI GCNGC 7 cut(s) 31, 64, 67, 143, 489, 733, 875
Bme1390I CCNGG 2 cut(s) 511, 721
Bme18I GGWCC 3 cut(s) 544, 711, 744
BmeT110I CYCGRG 2 cut(s) 476, 851
BmgBI CACGTC 1 cut(s) 190
BmgT120I GGNCC 3 cut(s) 544, 711, 744
BmiI GGNNCC 6 cut(s) 122, 207, 328, 545, 546, 745
BmrFI CCNGG 2 cut(s) 511, 721
BmsI GCATC 4 cut(s) 7, 222, 405, 531
BoxI GACNNNNGTC 1 cut(s) 749
BpiI GAAGAC 1 cut(s) 328
BpuEI CTTGAG 1 cut(s) 643
BpuMI CCSGG 1 cut(s) 511
BsaAI YACGTR 1 cut(s) 808
BsaHI GRCGYC 3 cut(s) 121, 327, 528
BsaJI CCNNGG 3 cut(s) 330, 509, 720
BsaWI WCCGGW 1 cut(s) 455
BsaXI ACNNNNNCTCC 2 cut(s) 290, 320
Bsc4I CCNNNNNNNGG 5 cut(s) 254, 462, 540, 643, 720
Bse1I ACTGG 1 cut(s) 352
Bse21I CCTNAGG 1 cut(s) 363
Bse3DI GCAATG 2 cut(s) 174, 697
BseBI CCWGG 1 cut(s) 721
BseDI CCNNGG 3 cut(s) 330, 509, 720
BseGI GGATG 2 cut(s) 407, 492
BseLI CCNNNNNNNGG 5 cut(s) 254, 462, 540, 643, 720
BseMI GCAATG 2 cut(s) 174, 697
BseMII CTCAG 4 cut(s) 377, 394, 416, 623
BseNI ACTGG 1 cut(s) 352
BseRI GAGGAG 1 cut(s) 839
BseXI GCAGC 5 cut(s) 41, 52, 128, 499, 860
Bsh1236I CGCG 3 cut(s) 370, 738, 773
BshFI GGCC 1 cut(s) 857
BshNI GGYRCC 2 cut(s) 120, 326
BsiHKAI GWGCWC 3 cut(s) 267, 401, 629
BsiHKCI CYCGRG 2 cut(s) 476, 851
BsiSI CCGG 2 cut(s) 456, 511
BsiWI CGTACG 1 cut(s) 774
BslFI GGGAC 3 cut(s) 344, 557, 757
BslI CCNNNNNNNGG 5 cut(s) 254, 462, 540, 643, 720
BsmAI GTCTC 1 cut(s) 152
BsmBI CGTCTC 1 cut(s) 152
BsmFI GGGAC 3 cut(s) 344, 557, 757
BsnI GGCC 1 cut(s) 857
BsoBI CYCGRG 2 cut(s) 476, 851
Bsp1286I GDGCHC 3 cut(s) 267, 401, 629
Bsp1407I TGTACA 1 cut(s) 600
Bsp143I GATC 2 cut(s) 289, 432
BspACI CCGC 7 cut(s) 63, 260, 731, 738, 760, 771, 787
BspANI GGCC 1 cut(s) 857
BspCNI CTCAG 4 cut(s) 376, 393, 415, 624
BspFNI CGCG 3 cut(s) 370, 738, 773
BspHI TCATGA 1 cut(s) 390
BspLI GGNNCC 6 cut(s) 122, 207, 328, 545, 546, 745
BspPI GGATC 1 cut(s) 284
BspT107I GGYRCC 2 cut(s) 120, 326
BsrDI GCAATG 2 cut(s) 174, 697
BsrGI TGTACA 1 cut(s) 600
BsrI ACTGG 1 cut(s) 352
BssECI CCNNGG 3 cut(s) 330, 509, 720
BssMI GATC 2 cut(s) 289, 432
BssNI GRCGYC 3 cut(s) 121, 327, 528
BssSI CACGAG 1 cut(s) 866
BssT1I CCWWGG 1 cut(s) 330
Bst2BI CACGAG 1 cut(s) 866
Bst2UI CCWGG 1 cut(s) 721
Bst4CI ACNGT 2 cut(s) 83, 137
Bst6I CTCTTC 1 cut(s) 50
BstACI GRCGYC 3 cut(s) 121, 327, 528
BstAUI TGTACA 1 cut(s) 600
BstBAI YACGTR 1 cut(s) 808
BstC8I GCNNGC 2 cut(s) 665, 736
BstDEI CTNAG 4 cut(s) 363, 380, 402, 632
BstF5I GGATG 2 cut(s) 407, 492
BstFNI CGCG 3 cut(s) 370, 738, 773
BstH2I RGCGCY 3 cut(s) 124, 330, 874
BstHHI GCGC 5 cut(s) 123, 329, 370, 827, 873
BstKTI GATC 2 cut(s) 292, 435
BstMAI GTCTC 1 cut(s) 152
BstMBI GATC 2 cut(s) 289, 432
BstMWI GCNNNNNNNGC 4 cut(s) 26, 374, 633, 868
BstNI CCWGG 1 cut(s) 721
BstPAI GACNNNNGTC 1 cut(s) 749
BstSCI CCNGG 2 cut(s) 509, 719
BstUI CGCG 3 cut(s) 370, 738, 773
BstV1I GCAGC 5 cut(s) 41, 52, 128, 499, 860
BstV2I GAAGAC 1 cut(s) 328
Bsu36I CCTNAGG 1 cut(s) 363
BsuRI GGCC 1 cut(s) 857
BtgZI GCGATG 1 cut(s) 30
BtrI CACGTC 1 cut(s) 190
BtsCI GGATG 2 cut(s) 407, 492
Cac8I GCNNGC 2 cut(s) 665, 736
CciI TCATGA 1 cut(s) 390
CfoI GCGC 5 cut(s) 123, 329, 370, 827, 873
Cfr13I GGNCC 3 cut(s) 544, 711, 744
CseI GACGC 1 cut(s) 691
Csp6I GTAC 5 cut(s) 84, 355, 481, 601, 775
CviAII CATG 4 cut(s) 117, 131, 391, 412
CviQI GTAC 5 cut(s) 84, 355, 481, 601, 775
DdeI CTNAG 4 cut(s) 363, 380, 402, 632
DinI GGCGCC 2 cut(s) 122, 328
DpnI GATC 2 cut(s) 291, 434
DpnII GATC 2 cut(s) 289, 432
DraIII CACNNNGTG 3 cut(s) 190, 740, 808
Eam1104I CTCTTC 1 cut(s) 50
EarI CTCTTC 1 cut(s) 50
Ecl136II GAGCTC 1 cut(s) 399
Eco130I CCWWGG 1 cut(s) 330
Eco24I GRGCYC 1 cut(s) 401
Eco47I GGWCC 3 cut(s) 544, 711, 744
Eco47III AGCGCT 1 cut(s) 872
Eco53kI GAGCTC 1 cut(s) 399
Eco72I CACGTG 1 cut(s) 808
Eco81I CCTNAGG 1 cut(s) 363
Eco88I CYCGRG 2 cut(s) 476, 851
EcoICRI GAGCTC 1 cut(s) 399
EcoO109I RGGNCCY 1 cut(s) 544
EcoRII CCWGG 1 cut(s) 719
EcoT14I CCWWGG 1 cut(s) 330
EcoT22I ATGCAT 1 cut(s) 237
EcoT38I GRGCYC 1 cut(s) 401
EgeI GGCGCC 2 cut(s) 122, 328
EheI GGCGCC 2 cut(s) 122, 328
ErhI CCWWGG 1 cut(s) 330
Esp3I CGTCTC 1 cut(s) 152
FaeI CATG 4 cut(s) 120, 134, 394, 415
FalI AAGNNNNNCTT 2 cut(s) 323, 355
FaqI GGGAC 3 cut(s) 344, 557, 757
FatI CATG 4 cut(s) 116, 130, 390, 411
FauNDI CATATG 1 cut(s) 816
FblI GTMKAC 1 cut(s) 345
Fnu4HI GCNGC 7 cut(s) 30, 63, 66, 142, 488, 732, 874
FokI GGATG 2 cut(s) 394, 479
FriOI GRGCYC 1 cut(s) 401
Fsp4HI GCNGC 7 cut(s) 30, 63, 66, 142, 488, 732, 874
GlaI GCGC 5 cut(s) 122, 328, 369, 826, 872
GluI GCNGC 7 cut(s) 30, 63, 66, 142, 488, 732, 874
HaeII RGCGCY 3 cut(s) 124, 330, 874
HaeIII GGCC 1 cut(s) 857
HapII CCGG 2 cut(s) 456, 511
HgaI GACGC 1 cut(s) 691
HhaI GCGC 5 cut(s) 123, 329, 370, 827, 873
Hin1I GRCGYC 3 cut(s) 121, 327, 528
Hin1II CATG 4 cut(s) 120, 134, 394, 415
Hin6I GCGC 5 cut(s) 121, 327, 368, 825, 871
HinP1I GCGC 5 cut(s) 121, 327, 368, 825, 871
HincII GTYRAC 1 cut(s) 346
HindII GTYRAC 1 cut(s) 346
HinfI GANTC 2 cut(s) 385, 446
HpaII CCGG 2 cut(s) 456, 511
HphI GGTGA 4 cut(s) 28, 295, 441, 709
Hpy166II GTNNAC 2 cut(s) 346, 601
Hpy188I TCNGA 3 cut(s) 315, 583, 633
Hpy188III TCNNGA 5 cut(s) 52, 282, 382, 391, 430
Hpy8I GTNNAC 2 cut(s) 346, 601
Hpy99I CGWCG 6 cut(s) 191, 440, 521, 530, 533, 539
HpyAV CCTTC 3 cut(s) 95, 170, 724
HpyCH4III ACNGT 2 cut(s) 83, 137
HpyCH4IV ACGT 5 cut(s) 189, 357, 528, 750, 807
HpyCH4V TGCA 3 cut(s) 221, 235, 702
HpyF10VI GCNNNNNNNGC 4 cut(s) 26, 374, 633, 868
HpyF3I CTNAG 4 cut(s) 363, 380, 402, 632
HpySE526I ACGT 5 cut(s) 189, 357, 528, 750, 807
Hsp92I GRCGYC 3 cut(s) 121, 327, 528
Hsp92II CATG 4 cut(s) 120, 134, 394, 415
HspAI GCGC 5 cut(s) 121, 327, 368, 825, 871
KasI GGCGCC 2 cut(s) 120, 326
KflI GGGWCCC 1 cut(s) 544
Kzo9I GATC 2 cut(s) 289, 432
LmnI GCTCC 3 cut(s) 211, 690, 832
Lsp1109I GCAGC 5 cut(s) 41, 52, 128, 499, 860
LweI GCATC 4 cut(s) 7, 222, 405, 531
MaeII ACGT 5 cut(s) 189, 357, 528, 750, 807
MaeIII GTNAC 1 cut(s) 808
MalI GATC 2 cut(s) 291, 434
MboI GATC 2 cut(s) 289, 432
MboII GAAGA 3 cut(s) 67, 147, 328
MhlI GDGCHC 3 cut(s) 267, 401, 629
MluCI AATT 4 cut(s) 22, 549, 559, 639
Mly113I GGCGCC 2 cut(s) 121, 327
MlyI GAGTC 1 cut(s) 440
MmeI TCCRAC 1 cut(s) 102
MnlI CCTC 8 cut(s) 101, 316, 367, 372, 605, 767, 847, 860
Mph1103I ATGCAT 1 cut(s) 237
MseI TTAA 2 cut(s) 171, 795
MslI CAYNNNNRTG 1 cut(s) 612
MspA1I CMGCKG 1 cut(s) 65
MspI CCGG 2 cut(s) 456, 511
MspR9I CCNGG 2 cut(s) 511, 721
MvaI CCWGG 1 cut(s) 721
MvnI CGCG 3 cut(s) 370, 738, 773
MwoI GCNNNNNNNGC 4 cut(s) 26, 374, 633, 868
NarI GGCGCC 2 cut(s) 121, 327
NciI CCSGG 1 cut(s) 511
NdeI CATATG 1 cut(s) 816
NdeII GATC 2 cut(s) 289, 432
NlaIII CATG 4 cut(s) 120, 134, 394, 415
NlaIV GGNNCC 6 cut(s) 122, 207, 328, 545, 546, 745
NmuCI GTSAC 1 cut(s) 808
NsiI ATGCAT 1 cut(s) 237
OliI CACNNNNGTG 1 cut(s) 612
PaeR7I CTCGAG 2 cut(s) 476, 851
PagI TCATGA 1 cut(s) 390
PcsI WCGNNNNNNNCGW 6 cut(s) 435, 441, 522, 525, 531, 534
PfeI GAWTC 1 cut(s) 385
Pfl23II CGTACG 1 cut(s) 774
PkrI GCNGC 7 cut(s) 31, 64, 67, 143, 489, 733, 875
PleI GAGTC 1 cut(s) 440
PluTI GGCGCC 2 cut(s) 124, 330
PmaCI CACGTG 1 cut(s) 808
PmlI CACGTG 1 cut(s) 808
PpsI GAGTC 1 cut(s) 440
Ppu21I YACGTR 1 cut(s) 808
PpuMI RGGWCCY 1 cut(s) 544
PshAI GACNNNNGTC 1 cut(s) 749
Psp124BI GAGCTC 1 cut(s) 401
Psp5II RGGWCCY 1 cut(s) 544
Psp6I CCWGG 1 cut(s) 719
PspCI CACGTG 1 cut(s) 808
PspGI CCWGG 1 cut(s) 719
PspLI CGTACG 1 cut(s) 774
PspN4I GGNNCC 6 cut(s) 122, 207, 328, 545, 546, 745
PspPI GGNCC 3 cut(s) 544, 711, 744
PspPPI RGGWCCY 1 cut(s) 544
PspXI VCTCGAGB 2 cut(s) 476, 851
RsaI GTAC 5 cut(s) 85, 356, 482, 602, 776
RsaNI GTAC 5 cut(s) 84, 355, 481, 601, 775
RseI CAYNNNNRTG 1 cut(s) 612
SacI GAGCTC 1 cut(s) 401
SalI GTCGAC 1 cut(s) 344
SaqAI TTAA 2 cut(s) 171, 795
SatI GCNGC 7 cut(s) 30, 63, 66, 142, 488, 732, 874
Sau3AI GATC 2 cut(s) 289, 432
Sau96I GGNCC 3 cut(s) 544, 711, 744
SchI GAGTC 1 cut(s) 440
ScrFI CCNGG 2 cut(s) 511, 721
SduI GDGCHC 3 cut(s) 267, 401, 629
SfaNI GCATC 4 cut(s) 7, 222, 405, 531
SfoI GGCGCC 2 cut(s) 122, 328
Sfr274I CTCGAG 2 cut(s) 476, 851
SinI GGWCC 3 cut(s) 544, 711, 744
SlaI CTCGAG 2 cut(s) 476, 851
SmiMI CAYNNNNRTG 1 cut(s) 612
SmlI CTYRAG 3 cut(s) 476, 622, 851
SmoI CTYRAG 3 cut(s) 476, 622, 851
Sse9I AATT 4 cut(s) 22, 549, 559, 639
SsiI CCGC 7 cut(s) 63, 260, 731, 738, 760, 771, 787
SspDI GGCGCC 2 cut(s) 120, 326
SspI AATATT 1 cut(s) 214
SstI GAGCTC 1 cut(s) 401
StyD4I CCNGG 2 cut(s) 509, 719
StyI CCWWGG 1 cut(s) 330
TaaI ACNGT 2 cut(s) 83, 137
TaiI ACGT 5 cut(s) 192, 360, 531, 753, 810
TaqI TCGA 7 cut(s) 283, 345, 435, 444, 477, 525, 852
TasI AATT 4 cut(s) 22, 549, 559, 639
TatI WGTACW 1 cut(s) 600
TauI GCSGC 2 cut(s) 65, 734
TfiI GAWTC 1 cut(s) 385
Tru1I TTAA 2 cut(s) 171, 795
Tru9I TTAA 2 cut(s) 171, 795
TseFI GTSAC 1 cut(s) 808
TseI GCWGC 5 cut(s) 29, 65, 141, 487, 873
Tsp45I GTSAC 1 cut(s) 808
VpaK11BI GGWCC 3 cut(s) 544, 711, 744
XcmI CCANNNNNNNNNTGG 2 cut(s) 187, 418
XhoI CTCGAG 2 cut(s) 476, 851
XmiI GTMKAC 1 cut(s) 345
ZraI GACGTC 1 cut(s) 529
Zsp2I ATGCAT 1 cut(s) 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.