Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0004833

Physical Location & Seq

Genomic Coordinates Reverse (-)

6430020 .. 6442479

Gene Structure 12460 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g09360.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGAATAAGGCTAGTCTTGTTCAGTGCTCGGCAAACTACATACCCTTGTCACCTATAAGCTTCTTAGAGCGAGCTGCTGTTGTCCACGGCGATAAGATTTCGATCGTTTACGGTGGAGTGAGACTTTCATGGAAGCAGACGCTTGAAAGATGTCGCAAGGTCGCCTCAGCTTTCGTTCACTTAGGCATATGTCGCCATGATATTGTTGCAGCTTTTGCACCAAACATTCCAGCACTCTATGAGCTACATTTCAGCGTTCCAATGGCAGGAGCAGTTCTTTGTGCACTCAACATTAAGCTGGACGCACCCGCATTAGCATTGATATTACAACAACTGGAAGCCAAAGCCATTATTGTAGATCGATCAGTACCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

125

Amino Acids

13.42

Weight (kDa)

9.05

Isoelectric Point (pI)

32.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004833)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g10580 FvH4_1g10581 FvH4_1g10590
malus_domestica	MD02G1120100.v1.1 MD15G1234100.v1.1
prunus_persica	Prupe.7G178600_v2.0.a1
pyrus_communis	pycom02g09360 pycom06g03660 pycom15g20860
rosa_chinensis	RchiOBHm_Chr1g0343831 RchiOBHm_Chr2g0097661 RchiOBHm_Chr5g0081661
rosa_laevigata	RLG00000016733
rosa_multiflora	Rmu_co8398949.1_g000001 Rmu_sc0003567.1_g000016 Rmu_sc0019235.1_g000003 Rmu_sc0022221.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144620 Rroxscaffold_3G00234410
rosa_rugosa	Rorug02G0068200 Rorug02G0253400 Rorug06G0115300
rosa_samantha	Rh2AG114700 Rh2BG117500 Rh2CG119500 Rh2DG118400 Rh4BG080100 Rh6BG186300 Rh6DG148000
rosa_wichuraiana	Rw0G011160 Rw2G008970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	309
AfaI	GTAC	1 cut(s)	369
AfiI	CCNNNNNNNGG	1 cut(s)	266
AgsI	TTSAA	1 cut(s)	146
AluBI	AGCT	6 cut(s)	60, 74, 170, 212, 244, 298
AluI	AGCT	6 cut(s)	60, 74, 170, 212, 244, 298
Alw21I	GWGCWC	2 cut(s)	29, 286
Alw26I	GTCTC	1 cut(s)	115
Alw44I	GTGCAC	1 cut(s)	282
ApaLI	GTGCAC	1 cut(s)	282
ApeKI	GCWGC	2 cut(s)	74, 209
AsuHPI	GGTGA	1 cut(s)	42
BaeGI	GKGCMC	1 cut(s)	286
Bbv12I	GWGCWC	2 cut(s)	29, 286
BbvCI	CCTCAGC	1 cut(s)	166
BbvI	GCAGC	2 cut(s)	61, 221
BceAI	ACGGC	1 cut(s)	103
BcoDI	GTCTC	1 cut(s)	115
BfaI	CTAG	1 cut(s)	12
BisI	GCNGC	2 cut(s)	75, 210
BlsI	GCNGC	2 cut(s)	76, 211
Bpu10I	CCTNAGC	1 cut(s)	166
Bsa29I	ATCGAT	1 cut(s)	361
BsaBI	GATNNNNATC	1 cut(s)	101
BsaJI	CCNNGG	1 cut(s)	85
Bsc4I	CCNNNNNNNGG	1 cut(s)	266
Bse1I	ACTGG	1 cut(s)	339
Bse8I	GATNNNNATC	1 cut(s)	101
BseCI	ATCGAT	1 cut(s)	361
BseDI	CCNNGG	1 cut(s)	85
BseJI	GATNNNNATC	1 cut(s)	101
BseLI	CCNNNNNNNGG	1 cut(s)	266
BseMII	CTCAG	1 cut(s)	180
BseNI	ACTGG	1 cut(s)	339
BseSI	GKGCMC	1 cut(s)	286
BseXI	GCAGC	2 cut(s)	61, 221
Bsh1285I	CGRYCG	1 cut(s)	105
BshVI	ATCGAT	1 cut(s)	361
BsiEI	CGRYCG	1 cut(s)	105
BsiHKAI	GWGCWC	2 cut(s)	29, 286
BslI	CCNNNNNNNGG	1 cut(s)	266
BsmAI	GTCTC	1 cut(s)	115
Bsp1286I	GDGCHC	2 cut(s)	29, 286
Bsp143I	GATC	3 cut(s)	102, 358, 362
BspACI	CCGC	1 cut(s)	309
BspCNI	CTCAG	1 cut(s)	179
BspDI	ATCGAT	1 cut(s)	361
BsrI	ACTGG	1 cut(s)	339
BssECI	CCNNGG	1 cut(s)	85
BssMI	GATC	3 cut(s)	102, 358, 362
Bst4CI	ACNGT	1 cut(s)	113
BstAPI	GCANNNNNTGC	1 cut(s)	215
BstC8I	GCNNGC	1 cut(s)	72
BstDEI	CTNAG	3 cut(s)	64, 166, 181
BstDSI	CCRYGG	1 cut(s)	85
BstKTI	GATC	3 cut(s)	105, 361, 365
BstMAI	GTCTC	1 cut(s)	115
BstMBI	GATC	3 cut(s)	102, 358, 362
BstMCI	CGRYCG	1 cut(s)	105
BstMWI	GCNNNNNNNGC	2 cut(s)	192, 215
BstSLI	GKGCMC	1 cut(s)	286
BstV1I	GCAGC	2 cut(s)	61, 221
Bsu15I	ATCGAT	1 cut(s)	361
BsuTUI	ATCGAT	1 cut(s)	361
BtgI	CCRYGG	1 cut(s)	85
BtsIMutI	CAGTG	1 cut(s)	29
Cac8I	GCNNGC	1 cut(s)	72
ClaI	ATCGAT	1 cut(s)	361
CseI	GACGC	2 cut(s)	148, 311
Csp6I	GTAC	1 cut(s)	368
CviAII	CATG	2 cut(s)	129, 197
CviJI	RGCY	9 cut(s)	11, 60, 74, 170, 212, 244, 298, 341, 347
CviKI_1	RGCY	9 cut(s)	11, 60, 74, 170, 212, 244, 298, 341, 347
CviQI	GTAC	1 cut(s)	368
DdeI	CTNAG	3 cut(s)	64, 166, 181
DpnI	GATC	3 cut(s)	104, 360, 364
DpnII	GATC	3 cut(s)	102, 358, 362
FaeI	CATG	2 cut(s)	132, 200
FaiI	YATR	7 cut(s)	41, 56, 130, 188, 190, 198, 240
FatI	CATG	2 cut(s)	128, 196
FauI	CCCGC	1 cut(s)	316
FauNDI	CATATG	1 cut(s)	188
Fnu4HI	GCNGC	2 cut(s)	75, 210
Fsp4HI	GCNGC	2 cut(s)	75, 210
FspBI	CTAG	1 cut(s)	12
GluI	GCNGC	2 cut(s)	75, 210
HgaI	GACGC	2 cut(s)	148, 311
Hin1II	CATG	2 cut(s)	132, 200
HindIII	AAGCTT	1 cut(s)	58
HphI	GGTGA	1 cut(s)	42
Hpy166II	GTNNAC	4 cut(s)	85, 109, 178, 284
Hpy8I	GTNNAC	4 cut(s)	85, 109, 178, 284
HpyCH4III	ACNGT	1 cut(s)	113
HpyCH4V	TGCA	3 cut(s)	209, 218, 284
HpyF10VI	GCNNNNNNNGC	2 cut(s)	192, 215
HpyF3I	CTNAG	3 cut(s)	64, 166, 181
Hsp92II	CATG	2 cut(s)	132, 200
Kzo9I	GATC	3 cut(s)	102, 358, 362
LmnI	GCTCC	1 cut(s)	269
LpnPI	CCDG	4 cut(s)	243, 252, 284, 320
Lsp1109I	GCAGC	2 cut(s)	61, 221
MaeI	CTAG	1 cut(s)	12
MaeIII	GTNAC	1 cut(s)	48
MalI	GATC	3 cut(s)	104, 360, 364
MboI	GATC	3 cut(s)	102, 358, 362
MhlI	GDGCHC	2 cut(s)	29, 286
MnlI	CCTC	1 cut(s)	175
MseI	TTAA	2 cut(s)	294, 373
MwoI	GCNNNNNNNGC	2 cut(s)	192, 215
NdeI	CATATG	1 cut(s)	188
NdeII	GATC	3 cut(s)	102, 358, 362
NlaIII	CATG	2 cut(s)	132, 200
NmeAIII	GCCGAG	1 cut(s)	8
NmuCI	GTSAC	1 cut(s)	48
PkrI	GCNGC	2 cut(s)	76, 211
Ple19I	CGATCG	1 cut(s)	105
PvuI	CGATCG	1 cut(s)	105
RsaI	GTAC	1 cut(s)	369
RsaNI	GTAC	1 cut(s)	368
SaqAI	TTAA	2 cut(s)	294, 373
SatI	GCNGC	2 cut(s)	75, 210
Sau3AI	GATC	3 cut(s)	102, 358, 362
SduI	GDGCHC	2 cut(s)	29, 286
SetI	ASST	9 cut(s)	55, 62, 76, 162, 172, 214, 246, 300, 373
SsiI	CCGC	1 cut(s)	309
SspMI	CTAG	1 cut(s)	12
TaaI	ACNGT	1 cut(s)	113
TaqI	TCGA	2 cut(s)	101, 361
Tru1I	TTAA	2 cut(s)	294, 373
Tru9I	TTAA	2 cut(s)	294, 373
TscAI	CASTG	1 cut(s)	29
TseFI	GTSAC	1 cut(s)	48
TseI	GCWGC	2 cut(s)	74, 209
Tsp45I	GTSAC	1 cut(s)	48
TspDTI	ATGAA	2 cut(s)	17, 117
TspRI	CASTG	1 cut(s)	29
VneI	GTGCAC	1 cut(s)	282
XspI	CTAG	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.