Rorug06G0115300

flavin-containing monooxygenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0004833
Physical Location & Seq
Reverse (-)
15719669 .. 15721713
2045 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0115300.1

Sequence Viewer

Length: 540 bp
ATGTTCTACTTTTGTGGCTACGTTTCAACTTTATATTCTCAAAGTTGTGAGGAAGTCTGCTTCTTTTGCCAGAGCAAGGATGCTGAAGTAATGTTGAAGCTTGGGAGCACACCAGACAAGCATGAGCAATATCGTTTGATGAGAGATGCAATGGAGAAACGGTTCATTCGAGTCACGTGGGGCTCAATAGTTGGTGGAGTGCGTCTTGGATTGTTCACTGCTACCTTTTATGGTTTACAAAATATGCTTGCTGAGAAAAGGGGTGTGCAAGATGTTTTCAATATTGTGGGAGCTGGTTCAGCCACGGCTGCGACATTTGGGCTATTATTGCCAGGATCATTACAATGGCGTGCAAGAAATATGTTACTGGGTTCGATCCTTGGAGCAGTCATTGGTTTCCCAATTGGGTGGGCACACTTGAAGCTGGTGCAGATAGCAAATGAAGGGAATCCTGCTGCGCATCCTAATTCAGATCAAAGAGAAGCAAAGAGTGGTGTTGGTGCTGCCATTGAGAGGCTTGAAGAAAATTTGAATAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004497 GO:0008150 GO:0008152 GO:0016491 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FMO-like K_oxygenase

Protein Analysis

179

Amino Acids

19.68

Weight (kDa)

8.37

Isoelectric Point (pI)

33.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tim17 PF02466 47 - 131 2e-06 Tim17/Tim22/Tim23/Pmp24 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 459
AclWI GGATC 2 cut(s) 343, 370
AcsI RAATTY 1 cut(s) 526
AcuI CTGAAG 1 cut(s) 105
AcvI CACGTG 1 cut(s) 177
AfiI CCNNNNNNNGG 2 cut(s) 76, 513
AgsI TTSAA 6 cut(s) 27, 97, 280, 421, 521, 532
AjnI CCWGG 1 cut(s) 331
AloI GAACNNNNNNTCC 2 cut(s) 146, 178
AluBI AGCT 3 cut(s) 100, 293, 424
AluI AGCT 3 cut(s) 100, 293, 424
Alw21I GWGCWC 1 cut(s) 110
AlwI GGATC 2 cut(s) 343, 370
ApeKI GCWGC 3 cut(s) 308, 455, 503
ApoI RAATTY 1 cut(s) 526
Asp700I GAANNNNTTC 1 cut(s) 161
AspLEI GCGC 1 cut(s) 460
BaeGI GKGCMC 1 cut(s) 415
BanII GRGCYC 1 cut(s) 185
BbrPI CACGTG 1 cut(s) 177
Bbv12I GWGCWC 1 cut(s) 110
BbvI GCAGC 3 cut(s) 295, 442, 490
BceAI ACGGC 1 cut(s) 321
BciT130I CCWGG 1 cut(s) 333
BisI GCNGC 3 cut(s) 309, 456, 504
BlsI GCNGC 3 cut(s) 310, 457, 505
Bme1390I CCNGG 1 cut(s) 333
BmrFI CCNGG 1 cut(s) 333
BmrI ACTGGG 1 cut(s) 377
BmsI GCATC 3 cut(s) 70, 136, 469
BmuI ACTGGG 1 cut(s) 377
BsaAI YACGTR 1 cut(s) 177
BsaJI CCNNGG 2 cut(s) 303, 379
BsaXI ACNNNNNCTCC 2 cut(s) 146, 176
Bsc4I CCNNNNNNNGG 2 cut(s) 76, 513
Bse1I ACTGG 1 cut(s) 372
Bse3DI GCAATG 1 cut(s) 156
BseBI CCWGG 1 cut(s) 333
BseDI CCNNGG 2 cut(s) 303, 379
BseGI GGATG 2 cut(s) 85, 460
BseLI CCNNNNNNNGG 2 cut(s) 76, 513
BseMI GCAATG 1 cut(s) 156
BseMII CTCAG 1 cut(s) 243
BseNI ACTGG 1 cut(s) 372
BseSI GKGCMC 1 cut(s) 415
BseXI GCAGC 3 cut(s) 295, 442, 490
BsgI GTGCAG 1 cut(s) 449
BsiHKAI GWGCWC 1 cut(s) 110
BslI CCNNNNNNNGG 2 cut(s) 76, 513
Bsp1286I GDGCHC 3 cut(s) 110, 185, 415
Bsp143I GATC 3 cut(s) 335, 375, 472
BspCNI CTCAG 1 cut(s) 244
BspPI GGATC 2 cut(s) 343, 370
BsrDI GCAATG 1 cut(s) 156
BsrI ACTGG 1 cut(s) 372
BssECI CCNNGG 2 cut(s) 303, 379
BssMI GATC 3 cut(s) 335, 375, 472
BssT1I CCWWGG 1 cut(s) 379
Bst2UI CCWGG 1 cut(s) 333
Bst4CI ACNGT 1 cut(s) 162
BstBAI YACGTR 1 cut(s) 177
BstC8I GCNNGC 2 cut(s) 249, 351
BstDEI CTNAG 1 cut(s) 252
BstDSI CCRYGG 1 cut(s) 303
BstF5I GGATG 2 cut(s) 85, 460
BstHHI GCGC 1 cut(s) 460
BstKTI GATC 3 cut(s) 338, 378, 475
BstMBI GATC 3 cut(s) 335, 375, 472
BstMWI GCNNNNNNNGC 4 cut(s) 66, 299, 308, 328
BstNI CCWGG 1 cut(s) 333
BstSCI CCNGG 1 cut(s) 331
BstSLI GKGCMC 1 cut(s) 415
BstV1I GCAGC 3 cut(s) 295, 442, 490
BstXI CCANNNNNNTGG 1 cut(s) 408
BtgI CCRYGG 1 cut(s) 303
BtsCI GGATG 2 cut(s) 85, 460
BtsI GCAGTG 1 cut(s) 216
BtsIMutI CAGTG 1 cut(s) 216
Cac8I GCNNGC 2 cut(s) 249, 351
CfoI GCGC 1 cut(s) 460
CseI GACGC 1 cut(s) 191
CviAII CATG 1 cut(s) 122
CviJI RGCY 9 cut(s) 18, 100, 183, 293, 302, 308, 322, 424, 517
CviKI_1 RGCY 9 cut(s) 18, 100, 183, 293, 302, 308, 322, 424, 517
DdeI CTNAG 1 cut(s) 252
DpnI GATC 3 cut(s) 337, 377, 474
DpnII GATC 3 cut(s) 335, 375, 472
Eco130I CCWWGG 1 cut(s) 379
Eco24I GRGCYC 1 cut(s) 185
Eco57I CTGAAG 1 cut(s) 105
Eco72I CACGTG 1 cut(s) 177
EcoRII CCWGG 1 cut(s) 331
EcoT14I CCWWGG 1 cut(s) 379
EcoT38I GRGCYC 1 cut(s) 185
ErhI CCWWGG 1 cut(s) 379
FaeI CATG 1 cut(s) 125
FaiI YATR 5 cut(s) 34, 123, 231, 245, 362
FatI CATG 1 cut(s) 121
Fnu4HI GCNGC 3 cut(s) 309, 456, 504
FokI GGATG 2 cut(s) 92, 447
FriOI GRGCYC 1 cut(s) 185
Fsp4HI GCNGC 3 cut(s) 309, 456, 504
FspI TGCGCA 1 cut(s) 459
GlaI GCGC 1 cut(s) 459
GluI GCNGC 3 cut(s) 309, 456, 504
HgaI GACGC 1 cut(s) 191
HhaI GCGC 1 cut(s) 460
Hin1II CATG 1 cut(s) 125
Hin6I GCGC 1 cut(s) 458
HinP1I GCGC 1 cut(s) 458
HindIII AAGCTT 1 cut(s) 98
HinfI GANTC 2 cut(s) 171, 448
Hpy166II GTNNAC 2 cut(s) 216, 236
Hpy188I TCNGA 1 cut(s) 472
Hpy8I GTNNAC 2 cut(s) 216, 236
HpyAV CCTTC 1 cut(s) 437
HpyCH4III ACNGT 1 cut(s) 162
HpyCH4IV ACGT 2 cut(s) 21, 176
HpyCH4V TGCA 4 cut(s) 149, 268, 353, 430
HpyF10VI GCNNNNNNNGC 4 cut(s) 66, 299, 308, 328
HpyF3I CTNAG 1 cut(s) 252
HpySE526I ACGT 2 cut(s) 21, 176
Hsp92II CATG 1 cut(s) 125
HspAI GCGC 1 cut(s) 458
Kzo9I GATC 3 cut(s) 335, 375, 472
LmnI GCTCC 3 cut(s) 105, 290, 383
LpnPI CCDG 8 cut(s) 83, 126, 279, 318, 345, 353, 410, 465
Lsp1109I GCAGC 3 cut(s) 295, 442, 490
LweI GCATC 3 cut(s) 70, 136, 469
MaeII ACGT 2 cut(s) 21, 176
MaeIII GTNAC 2 cut(s) 172, 363
MalI GATC 3 cut(s) 337, 377, 474
MboI GATC 3 cut(s) 335, 375, 472
MboII GAAGA 1 cut(s) 533
MfeI CAATTG 1 cut(s) 402
MhlI GDGCHC 3 cut(s) 110, 185, 415
MluCI AATT 3 cut(s) 402, 466, 526
MlyI GAGTC 1 cut(s) 180
MnlI CCTC 2 cut(s) 43, 507
MroXI GAANNNNTTC 1 cut(s) 161
MslI CAYNNNNRTG 1 cut(s) 343
MspR9I CCNGG 1 cut(s) 333
MunI CAATTG 1 cut(s) 402
MvaI CCWGG 1 cut(s) 333
MwoI GCNNNNNNNGC 4 cut(s) 66, 299, 308, 328
NdeII GATC 3 cut(s) 335, 375, 472
NlaIII CATG 1 cut(s) 125
NmuCI GTSAC 1 cut(s) 172
NsbI TGCGCA 1 cut(s) 459
PcsI WCGNNNNNNNCGW 1 cut(s) 166
PdmI GAANNNNTTC 1 cut(s) 161
PfeI GAWTC 1 cut(s) 448
PkrI GCNGC 3 cut(s) 310, 457, 505
PleI GAGTC 1 cut(s) 179
PmaCI CACGTG 1 cut(s) 177
PmlI CACGTG 1 cut(s) 177
PpsI GAGTC 1 cut(s) 179
Ppu21I YACGTR 1 cut(s) 177
Psp6I CCWGG 1 cut(s) 331
PspCI CACGTG 1 cut(s) 177
PspGI CCWGG 1 cut(s) 331
RseI CAYNNNNRTG 1 cut(s) 343
SatI GCNGC 3 cut(s) 309, 456, 504
Sau3AI GATC 3 cut(s) 335, 375, 472
SchI GAGTC 1 cut(s) 180
ScrFI CCNGG 1 cut(s) 333
SduI GDGCHC 3 cut(s) 110, 185, 415
SetI ASST 6 cut(s) 24, 102, 179, 227, 295, 426
SfaNI GCATC 3 cut(s) 70, 136, 469
SmiMI CAYNNNNRTG 1 cut(s) 343
Sse9I AATT 3 cut(s) 402, 466, 526
SspI AATATT 1 cut(s) 283
StyD4I CCNGG 1 cut(s) 331
StyI CCWWGG 1 cut(s) 379
TaaI ACNGT 1 cut(s) 162
TaiI ACGT 2 cut(s) 24, 179
TaqI TCGA 2 cut(s) 169, 374
TasI AATT 3 cut(s) 402, 466, 526
TfiI GAWTC 1 cut(s) 448
TscAI CASTG 1 cut(s) 223
TseFI GTSAC 1 cut(s) 172
TseI GCWGC 3 cut(s) 308, 455, 503
Tsp45I GTSAC 1 cut(s) 172
TspDTI ATGAA 2 cut(s) 154, 456
TspRI CASTG 1 cut(s) 223
XapI RAATTY 1 cut(s) 526
XmnI GAANNNNTTC 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.