Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0022221.1

Orthogroup ID

OG0004833

Physical Location & Seq

Genomic Coordinates Reverse (-)

1036 .. 2342

Gene Structure 1307 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0022221.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

atgaaactcgcctcgagaaattccaagttgggcaagagcagaagcaagtctggtgcatcgttcaagtgtctgtctccaagtgtagacgatgtctccatacacaacagagggtgctccgccaactatgttcctctttctccgatcagcttcttggagcgctcagccatagtctacagagacagaccctctgttgtgtatggagacatcgtctacacttggagacagacacttgaacgatgcaccagacttgcttctgctcttgcccaacttggaatttctcgaggcgatgtggtaagaaactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

100

Amino Acids

11.04

Weight (kDa)

10.11

Isoelectric Point (pI)

35.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004833)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g10580 FvH4_1g10581 FvH4_1g10590
malus_domestica	MD02G1120100.v1.1 MD15G1234100.v1.1
prunus_persica	Prupe.7G178600_v2.0.a1
pyrus_communis	pycom02g09360 pycom06g03660 pycom15g20860
rosa_chinensis	RchiOBHm_Chr1g0343831 RchiOBHm_Chr2g0097661 RchiOBHm_Chr5g0081661
rosa_laevigata	RLG00000016733
rosa_multiflora	Rmu_co8398949.1_g000001 Rmu_sc0003567.1_g000016 Rmu_sc0019235.1_g000003 Rmu_sc0022221.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144620 Rroxscaffold_3G00234410
rosa_rugosa	Rorug02G0068200 Rorug02G0253400 Rorug06G0115300
rosa_samantha	Rh2AG114700 Rh2BG117500 Rh2CG119500 Rh2DG118400 Rh4BG080100 Rh6BG186300 Rh6DG148000
rosa_wichuraiana	Rw0G011160 Rw2G008970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	3 cut(s)	84, 171, 210
AciI	CCGC	1 cut(s)	117
AcsI	RAATTY	2 cut(s)	19, 273
AfeI	AGCGCT	1 cut(s)	158
AgsI	TTSAA	2 cut(s)	64, 233
AluBI	AGCT	1 cut(s)	147
AluI	AGCT	1 cut(s)	147
Alw21I	GWGCWC	1 cut(s)	116
Alw26I	GTCTC	5 cut(s)	78, 97, 171, 195, 214
Ama87I	CYCGRG	2 cut(s)	13, 279
Aor51HI	AGCGCT	1 cut(s)	158
ApoI	RAATTY	2 cut(s)	19, 273
AspLEI	GCGC	1 cut(s)	159
AvaI	CYCGRG	2 cut(s)	13, 279
Bbv12I	GWGCWC	1 cut(s)	116
BcoDI	GTCTC	5 cut(s)	78, 97, 171, 195, 214
BfmI	CTRYAG	1 cut(s)	172
BfoI	RGCGCY	1 cut(s)	160
BlpI	GCTNAGC	1 cut(s)	160
BmeT110I	CYCGRG	2 cut(s)	13, 279
BmsI	GCATC	2 cut(s)	65, 227
Bpu1102I	GCTNAGC	1 cut(s)	160
BsaXI	ACNNNNNCTCC	4 cut(s)	77, 107, 192, 222
BseMII	CTCAG	1 cut(s)	174
BsiHKAI	GWGCWC	1 cut(s)	116
BsiHKCI	CYCGRG	2 cut(s)	13, 279
BsmAI	GTCTC	5 cut(s)	78, 97, 171, 195, 214
BsoBI	CYCGRG	2 cut(s)	13, 279
Bsp1286I	GDGCHC	1 cut(s)	116
Bsp143I	GATC	1 cut(s)	141
Bsp1720I	GCTNAGC	1 cut(s)	160
BspACI	CCGC	1 cut(s)	117
BspCNI	CTCAG	1 cut(s)	173
BssMI	GATC	1 cut(s)	141
BstDEI	CTNAG	1 cut(s)	160
BstH2I	RGCGCY	1 cut(s)	160
BstHHI	GCGC	1 cut(s)	159
BstKTI	GATC	1 cut(s)	144
BstMAI	GTCTC	5 cut(s)	78, 97, 171, 195, 214
BstMBI	GATC	1 cut(s)	141
BstSFI	CTRYAG	1 cut(s)	172
CfoI	GCGC	1 cut(s)	159
CviJI	RGCY	2 cut(s)	147, 164
CviKI_1	RGCY	2 cut(s)	147, 164
DdeI	CTNAG	1 cut(s)	160
DpnI	GATC	1 cut(s)	143
DpnII	GATC	1 cut(s)	141
EciI	GGCGGA	1 cut(s)	106
Eco47III	AGCGCT	1 cut(s)	158
Eco88I	CYCGRG	2 cut(s)	13, 279
FaiI	YATR	4 cut(s)	98, 126, 167, 198
FblI	GTMKAC	3 cut(s)	84, 171, 210
GlaI	GCGC	1 cut(s)	158
HaeII	RGCGCY	1 cut(s)	160
HhaI	GCGC	1 cut(s)	159
Hin6I	GCGC	1 cut(s)	157
HinP1I	GCGC	1 cut(s)	157
Hpy166II	GTNNAC	3 cut(s)	85, 172, 211
Hpy188I	TCNGA	1 cut(s)	141
Hpy188III	TCNNGA	2 cut(s)	15, 279
Hpy8I	GTNNAC	3 cut(s)	85, 172, 211
HpyCH4V	TGCA	2 cut(s)	56, 240
HpyF3I	CTNAG	1 cut(s)	160
HspAI	GCGC	1 cut(s)	157
Kzo9I	GATC	1 cut(s)	141
LmnI	GCTCC	2 cut(s)	119, 154
LpnPI	CCDG	2 cut(s)	36, 256
LweI	GCATC	2 cut(s)	65, 227
MalI	GATC	1 cut(s)	143
MboI	GATC	1 cut(s)	141
MhlI	GDGCHC	1 cut(s)	116
MluCI	AATT	2 cut(s)	19, 273
MnlI	CCTC	5 cut(s)	22, 101, 141, 196, 275
NdeII	GATC	1 cut(s)	141
PaeR7I	CTCGAG	2 cut(s)	13, 279
PflFI	GACNNNGTC	2 cut(s)	89, 206
PsyI	GACNNNGTC	2 cut(s)	89, 206
Sau3AI	GATC	1 cut(s)	141
SduI	GDGCHC	1 cut(s)	116
SetI	ASST	1 cut(s)	149
SfaNI	GCATC	2 cut(s)	65, 227
SfcI	CTRYAG	1 cut(s)	172
Sfr274I	CTCGAG	2 cut(s)	13, 279
SlaI	CTCGAG	2 cut(s)	13, 279
SmlI	CTYRAG	2 cut(s)	13, 279
SmoI	CTYRAG	2 cut(s)	13, 279
Sse9I	AATT	2 cut(s)	19, 273
SsiI	CCGC	1 cut(s)	117
TaqI	TCGA	2 cut(s)	14, 280
TasI	AATT	2 cut(s)	19, 273
TspDTI	ATGAA	1 cut(s)	17
Tth111I	GACNNNGTC	2 cut(s)	89, 206
XapI	RAATTY	2 cut(s)	19, 273
XhoI	CTCGAG	2 cut(s)	13, 279
XmiI	GTMKAC	3 cut(s)	84, 171, 210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.