Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003567.1

Orthogroup ID

OG0004833

Physical Location & Seq

Genomic Coordinates Forward (+)

75599 .. 76506

Gene Structure 908 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003567.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

atggtggtggagcgagacatagacgatctgccgaagaacgaggcgaaccacacggcgttaacgccgctgtggtttctggagagagcagctgtggtgcaccccaccaggaaatcggtggtccatggatctcgtcactacacgtggctccagacttaccagcgctgccgtcgtgtggcctccgccctcaacaaccactccgtcggcctcggttccacgtatggtaatgtctcttttgatgatgttgaccctgaactaacgcatgtaaccactagtcagatgaagttagttctgttcttgacagaagctcctttgttttggtttctatgtcataatcataggcattcaaaggctaaatttcttagtaggggtgctttgcgttttgcatttacggtgtgtggcttgctttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003987 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005975 GO:0006081 GO:0006082 GO:0006083 GO:0006097 GO:0006629 GO:0006631 GO:0008150 GO:0008152 GO:0009987 GO:0016405 GO:0016874 GO:0016877 GO:0016878 GO:0016999 GO:0017144 GO:0019605 GO:0019752 GO:0032787 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044262 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046459 GO:0046487 GO:0047760 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

135

Amino Acids

15.42

Weight (kDa)

9.22

Isoelectric Point (pI)

32.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004833)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g10580 FvH4_1g10581 FvH4_1g10590
malus_domestica	MD02G1120100.v1.1 MD15G1234100.v1.1
prunus_persica	Prupe.7G178600_v2.0.a1
pyrus_communis	pycom02g09360 pycom06g03660 pycom15g20860
rosa_chinensis	RchiOBHm_Chr1g0343831 RchiOBHm_Chr2g0097661 RchiOBHm_Chr5g0081661
rosa_laevigata	RLG00000016733
rosa_multiflora	Rmu_co8398949.1_g000001 Rmu_sc0003567.1_g000016 Rmu_sc0019235.1_g000003 Rmu_sc0022221.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144620 Rroxscaffold_3G00234410
rosa_rugosa	Rorug02G0068200 Rorug02G0253400 Rorug06G0115300
rosa_samantha	Rh2AG114700 Rh2BG117500 Rh2CG119500 Rh2DG118400 Rh4BG080100 Rh6BG186300 Rh6DG148000
rosa_wichuraiana	Rw0G011160 Rw2G008970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	65, 180
AclWI	GGATC	1 cut(s)	133
AcsI	RAATTY	1 cut(s)	353
AcvI	CACGTG	1 cut(s)	141
AfeI	AGCGCT	1 cut(s)	161
AfiI	CCNNNNNNNGG	1 cut(s)	172
AflIII	ACRYGT	1 cut(s)	138
AgsI	TTSAA	1 cut(s)	345
AhlI	ACTAGT	1 cut(s)	269
AjnI	CCWGG	1 cut(s)	104
AluBI	AGCT	2 cut(s)	89, 305
AluI	AGCT	2 cut(s)	89, 305
Alw21I	GWGCWC	1 cut(s)	99
Alw26I	GTCTC	2 cut(s)	9, 232
Alw44I	GTGCAC	1 cut(s)	95
AlwI	GGATC	1 cut(s)	133
Aor51HI	AGCGCT	1 cut(s)	161
AoxI	GGCC	2 cut(s)	174, 202
ApaLI	GTGCAC	1 cut(s)	95
ApeKI	GCWGC	2 cut(s)	86, 162
ApoI	RAATTY	1 cut(s)	353
AspLEI	GCGC	1 cut(s)	162
AspS9I	GGNCC	1 cut(s)	118
AvaII	GGWCC	1 cut(s)	118
BaeGI	GKGCMC	1 cut(s)	99
BbrPI	CACGTG	1 cut(s)	141
Bbv12I	GWGCWC	1 cut(s)	99
BbvI	GCAGC	2 cut(s)	98, 149
BceAI	ACGGC	2 cut(s)	69, 150
BciT130I	CCWGG	1 cut(s)	106
BcoDI	GTCTC	2 cut(s)	9, 232
BcuI	ACTAGT	1 cut(s)	269
BfaI	CTAG	1 cut(s)	270
BfoI	RGCGCY	1 cut(s)	163
BisI	GCNGC	3 cut(s)	65, 87, 163
BlsI	GCNGC	3 cut(s)	66, 88, 164
Bme1390I	CCNGG	1 cut(s)	106
Bme18I	GGWCC	1 cut(s)	118
BmgT120I	GGNCC	1 cut(s)	118
BmiI	GGNNCC	2 cut(s)	146, 211
BmrFI	CCNGG	1 cut(s)	106
BpmI	CTGGAG	2 cut(s)	98, 131
BsaAI	YACGTR	2 cut(s)	141, 216
BsaJI	CCNNGG	2 cut(s)	121, 205
BsaXI	ACNNNNNCTCC	4 cut(s)	179, 209, 289, 319
Bsc4I	CCNNNNNNNGG	1 cut(s)	172
BseBI	CCWGG	1 cut(s)	106
BseDI	CCNNGG	2 cut(s)	121, 205
BseLI	CCNNNNNNNGG	1 cut(s)	172
BseSI	GKGCMC	1 cut(s)	99
BseXI	GCAGC	2 cut(s)	98, 149
BshFI	GGCC	2 cut(s)	176, 204
BsiHKAI	GWGCWC	1 cut(s)	99
BslI	CCNNNNNNNGG	1 cut(s)	172
BsmAI	GTCTC	2 cut(s)	9, 232
BsmI	GAATGC	1 cut(s)	340
BsnI	GGCC	2 cut(s)	176, 204
Bsp1286I	GDGCHC	1 cut(s)	99
Bsp143I	GATC	2 cut(s)	25, 125
Bsp19I	CCATGG	1 cut(s)	121
BspACI	CCGC	2 cut(s)	65, 180
BspANI	GGCC	2 cut(s)	176, 204
BspLI	GGNNCC	2 cut(s)	146, 211
BspPI	GGATC	1 cut(s)	133
BssECI	CCNNGG	2 cut(s)	121, 205
BssMI	GATC	2 cut(s)	25, 125
BssT1I	CCWWGG	1 cut(s)	121
Bst2UI	CCWGG	1 cut(s)	106
Bst4CI	ACNGT	1 cut(s)	391
BstBAI	YACGTR	2 cut(s)	141, 216
BstC8I	GCNNGC	1 cut(s)	401
BstDEI	CTNAG	1 cut(s)	359
BstDSI	CCRYGG	1 cut(s)	121
BstH2I	RGCGCY	1 cut(s)	163
BstHHI	GCGC	1 cut(s)	162
BstKTI	GATC	2 cut(s)	28, 128
BstMAI	GTCTC	2 cut(s)	9, 232
BstMBI	GATC	2 cut(s)	25, 125
BstNI	CCWGG	1 cut(s)	106
BstNSI	RCATGY	1 cut(s)	263
BstSCI	CCNGG	1 cut(s)	104
BstSLI	GKGCMC	1 cut(s)	99
BstV1I	GCAGC	2 cut(s)	98, 149
BstX2I	RGATCY	1 cut(s)	125
BstYI	RGATCY	1 cut(s)	125
BsuRI	GGCC	2 cut(s)	176, 204
BtgI	CCRYGG	1 cut(s)	121
Cac8I	GCNNGC	1 cut(s)	401
CfoI	GCGC	1 cut(s)	162
Cfr13I	GGNCC	1 cut(s)	118
CviAII	CATG	2 cut(s)	122, 260
CviJI	RGCY	7 cut(s)	89, 145, 176, 204, 305, 350, 399
CviKI_1	RGCY	7 cut(s)	89, 145, 176, 204, 305, 350, 399
DdeI	CTNAG	1 cut(s)	359
DpnI	GATC	2 cut(s)	27, 127
DpnII	GATC	2 cut(s)	25, 125
EciI	GGCGGA	1 cut(s)	169
Eco130I	CCWWGG	1 cut(s)	121
Eco47I	GGWCC	1 cut(s)	118
Eco47III	AGCGCT	1 cut(s)	161
Eco72I	CACGTG	1 cut(s)	141
EcoRII	CCWGG	1 cut(s)	104
EcoT14I	CCWWGG	1 cut(s)	121
ErhI	CCWWGG	1 cut(s)	121
FaeI	CATG	2 cut(s)	125, 263
FaiI	YATR	7 cut(s)	20, 123, 219, 261, 325, 330, 336
FatI	CATG	2 cut(s)	121, 259
Fnu4HI	GCNGC	3 cut(s)	65, 87, 163
Fsp4HI	GCNGC	3 cut(s)	65, 87, 163
FspBI	CTAG	1 cut(s)	270
GlaI	GCGC	1 cut(s)	161
GluI	GCNGC	3 cut(s)	65, 87, 163
GsuI	CTGGAG	2 cut(s)	98, 131
HaeII	RGCGCY	1 cut(s)	163
HaeIII	GGCC	2 cut(s)	176, 204
HhaI	GCGC	1 cut(s)	162
Hin1II	CATG	2 cut(s)	125, 263
Hin6I	GCGC	1 cut(s)	160
HinP1I	GCGC	1 cut(s)	160
HincII	GTYRAC	2 cut(s)	60, 244
HindII	GTYRAC	2 cut(s)	60, 244
HpaI	GTTAAC	1 cut(s)	60
Hpy166II	GTNNAC	3 cut(s)	60, 97, 244
Hpy188I	TCNGA	1 cut(s)	276
Hpy188III	TCNNGA	3 cut(s)	77, 148, 295
Hpy8I	GTNNAC	3 cut(s)	60, 97, 244
Hpy99I	CGWCG	2 cut(s)	171, 203
HpyCH4III	ACNGT	1 cut(s)	391
HpyCH4IV	ACGT	2 cut(s)	140, 215
HpyCH4V	TGCA	2 cut(s)	97, 383
HpyF3I	CTNAG	1 cut(s)	359
HpySE526I	ACGT	2 cut(s)	140, 215
Hsp92II	CATG	2 cut(s)	125, 263
HspAI	GCGC	1 cut(s)	160
KspAI	GTTAAC	1 cut(s)	60
Kzo9I	GATC	2 cut(s)	25, 125
LmnI	GCTCC	3 cut(s)	10, 150, 310
LpnPI	CCDG	6 cut(s)	62, 91, 118, 161, 170, 261
Lsp1109I	GCAGC	2 cut(s)	98, 149
MaeI	CTAG	1 cut(s)	270
MaeII	ACGT	2 cut(s)	140, 215
MaeIII	GTNAC	2 cut(s)	131, 262
MalI	GATC	2 cut(s)	27, 127
MboI	GATC	2 cut(s)	25, 125
MboII	GAAGA	1 cut(s)	46
MflI	RGATCY	1 cut(s)	125
MhlI	GDGCHC	1 cut(s)	99
MluCI	AATT	1 cut(s)	353
MnlI	CCTC	4 cut(s)	34, 187, 194, 215
MseI	TTAA	2 cut(s)	59, 406
MspA1I	CMGCKG	2 cut(s)	67, 89
MspR9I	CCNGG	1 cut(s)	106
Mva1269I	GAATGC	1 cut(s)	340
MvaI	CCWGG	1 cut(s)	106
NcoI	CCATGG	1 cut(s)	121
NdeII	GATC	2 cut(s)	25, 125
NlaIII	CATG	2 cut(s)	125, 263
NlaIV	GGNNCC	2 cut(s)	146, 211
NmuCI	GTSAC	1 cut(s)	131
NspI	RCATGY	1 cut(s)	263
PctI	GAATGC	1 cut(s)	340
PkrI	GCNGC	3 cut(s)	66, 88, 164
PmaCI	CACGTG	1 cut(s)	141
PmlI	CACGTG	1 cut(s)	141
Ppu21I	YACGTR	2 cut(s)	141, 216
Psp6I	CCWGG	1 cut(s)	104
PspCI	CACGTG	1 cut(s)	141
PspGI	CCWGG	1 cut(s)	104
PspN4I	GGNNCC	2 cut(s)	146, 211
PspPI	GGNCC	1 cut(s)	118
PsuI	RGATCY	1 cut(s)	125
PvuII	CAGCTG	1 cut(s)	89
SaqAI	TTAA	2 cut(s)	59, 406
SatI	GCNGC	3 cut(s)	65, 87, 163
Sau3AI	GATC	2 cut(s)	25, 125
Sau96I	GGNCC	1 cut(s)	118
ScrFI	CCNGG	1 cut(s)	106
SduI	GDGCHC	1 cut(s)	99
SetI	ASST	4 cut(s)	91, 143, 218, 307
SinI	GGWCC	1 cut(s)	118
SpeI	ACTAGT	1 cut(s)	269
Sse9I	AATT	1 cut(s)	353
SsiI	CCGC	2 cut(s)	65, 180
SspMI	CTAG	1 cut(s)	270
StyD4I	CCNGG	1 cut(s)	104
StyI	CCWWGG	1 cut(s)	121
TaaI	ACNGT	1 cut(s)	391
TaiI	ACGT	2 cut(s)	143, 218
TasI	AATT	1 cut(s)	353
TauI	GCSGC	1 cut(s)	67
Tru1I	TTAA	2 cut(s)	59, 406
Tru9I	TTAA	2 cut(s)	59, 406
TseFI	GTSAC	1 cut(s)	131
TseI	GCWGC	2 cut(s)	86, 162
Tsp45I	GTSAC	1 cut(s)	131
TspDTI	ATGAA	1 cut(s)	293
TspGWI	ACGGA	1 cut(s)	187
VneI	GTGCAC	1 cut(s)	95
VpaK11BI	GGWCC	1 cut(s)	118
XapI	RAATTY	1 cut(s)	353
XceI	RCATGY	1 cut(s)	263
XcmI	CCANNNNNNNNNTGG	1 cut(s)	112
XspI	CTAG	1 cut(s)	270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.