FvH4_1g12500

Exopolygalacturonase-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Forward (+)
6873416 .. 6876074
2659 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g12500.t1

Sequence Viewer

Length: 1335 bp
ATGAAGCACAACCCTAACAACAATGTTCATACTCGAATCAGAGGAAAAAACTATCACTGGTTAAAAATGGGTTTAAGCTTTTTCATCCAGTCCGCTTGCTTAGTGTCCTTTCTTGTATCCGTTACCCTAGTTCATGCTCAGAAAAGGGTTTTCGATGTGGCAAATTATGGTGCTCGTGGAGACGGAAGAACAGATAGCAGCAAGGCCTTCATTGATGCATGGAATGGAGCTTGTCAAAACATAGGAGGAGGTACGGTGCTGTTCCCAAAAGGCACCTTCATGGTGGCTCCGGTGGTTCTTCTAGGTCCATGTAAGGGATCAATGGAATTGCGATTTCAGGGTAACCTATTGGCTTCTAAGAAGCCCAGTGATTTCCTTGGTATTGACCATTGGATCACCGTACAACGCGTTAACGGCTTGATGATTAGTGGTGGAGGAACCCTAGATGGCCTCGGAGCCGATGGTTGGGGTTTTAATGATTGTCTGAAAAATCCAGGCCGTTGCAAGCAACTCCCTGCTACATTGCGGTTGGATTTTGTCACACAAGGACACATAGATACCATTACATCGCTCAACAGCAAAAACACCCACATCAATCTTTTTGCATGCAAGGACGTGCTTATTAGCAACGTCAAGATTATAGCTCCGGGAGACAGTCCCAACACCGATGGAATCCACATTGGCAACTCACAGAACATCTATATCGTGGATACACACATATCCACCGGAGACGATTGTGTCTCCGTCCTCCCCGGATCACAATACATTAACGTCACCGGCGTCTATTGCGGTCCAGGCCATGGAATAAGCATCGGCAGCCTCGGCAGAACTGCTGGTGAATCTGTTAGTGACTTGTATGTAAAAAACTGCAGATTCGTGGATACTCAGAATGGTGTGAGAATCAAAACATGGGCTGTGGATGCTAAACCGGGAACTGTTTCACGTGTTGGCTTTGAGCACATCGAAATGGATAATGTGGACAATCCCATCGTTATTGATCAAGAATATTGCCCTGGTGGTGGTTGTAGTAAACAGGAATCCTCGAAAGTCCAGATTAGGGATGTTAAGTTCAATGACATTAGAGGCAGTTCTGCCACAAAGGAGGCAGTTACTCTCAAATGCAGCCAAAGTGTGCCTTGTCAAGATATCGAGCTGAAGGACATCGACCTAAAGAACGGAGGACCTGGAGGTCCGGCGGTTTCATTGTCCTATAATGTAAGAGGCAGAACTTACGGCATACAAAATCCTCCATCCAGTGTAAAACCACCGGTAGCTTCTTCCACTGAATTAGAGGACTATTCTTCCACTGAATTAGAGGACTATAACTGGTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

445

Amino Acids

47.92

Weight (kDa)

7.12

Isoelectric Point (pI)

32.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pect-lyase_RHGA_epim PF12708 51 - 99 3.2e-07 Rhamnogalacturonase A/epimerase, pectate lyase-like
Glyco_hydro_28 PF00295 78 - 393 2.4e-98 Glycosyl hydrolases family 28
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 737, 1188
AccB1I GGYRCC 1 cut(s) 272
AccB7I CCANNNNNTGG 1 cut(s) 800
AccII CGCG 1 cut(s) 408
AciI CCGC 4 cut(s) 93, 526, 789, 1196
AclWI GGATC 3 cut(s) 325, 401, 763
AcuI CTGAAG 1 cut(s) 1175
AcvI CACGTG 1 cut(s) 944
AcyI GRCGYC 1 cut(s) 780
AfaI GTAC 3 cut(s) 253, 402, 1331
AfiI CCNNNNNNNGG 5 cut(s) 314, 465, 800, 1019, 1057
AflIII ACRYGT 2 cut(s) 406, 943
AgeI ACCGGT 1 cut(s) 1267
AgsI TTSAA 1 cut(s) 1072
AjiI CACGTC 1 cut(s) 616
AjnI CCWGG 4 cut(s) 493, 793, 1012, 1183
AloI GAACNNNNNNTCC 2 cut(s) 1052, 1084
AluBI AGCT 5 cut(s) 78, 230, 644, 1153, 1274
AluI AGCT 5 cut(s) 78, 230, 644, 1153, 1274
Alw21I GWGCWC 2 cut(s) 175, 960
Alw26I GTCTC 4 cut(s) 174, 645, 723, 745
AlwI GGATC 3 cut(s) 325, 401, 763
AoxI GGCC 4 cut(s) 204, 448, 496, 796
ApeKI GCWGC 3 cut(s) 198, 816, 1122
AsiGI ACCGGT 1 cut(s) 1267
Asp700I GAANNNNTTC 1 cut(s) 937
AspS9I GGNCC 4 cut(s) 305, 791, 1181, 1190
AsuC2I CCSGG 3 cut(s) 648, 753, 930
AsuHPI GGTGA 3 cut(s) 388, 766, 848
AvaII GGWCC 4 cut(s) 305, 791, 1181, 1190
BanI GGYRCC 1 cut(s) 272
BauI CACGAG 1 cut(s) 174
BbrPI CACGTG 1 cut(s) 944
Bbv12I GWGCWC 2 cut(s) 175, 960
BbvI GCAGC 3 cut(s) 210, 828, 1134
BccI CCATC 5 cut(s) 440, 455, 662, 995, 1258
BceAI ACGGC 3 cut(s) 430, 483, 1249
BciT130I CCWGG 4 cut(s) 495, 795, 1014, 1185
BciVI GTATCC 3 cut(s) 127, 703, 874
BclI TGATCA 1 cut(s) 997
BcnI CCSGG 3 cut(s) 648, 753, 930
BcoDI GTCTC 4 cut(s) 174, 645, 723, 745
BfaI CTAG 3 cut(s) 128, 302, 443
BfmI CTRYAG 1 cut(s) 868
BfuI GTATCC 3 cut(s) 127, 703, 874
BisI GCNGC 3 cut(s) 199, 817, 1123
BlsI GCNGC 3 cut(s) 200, 818, 1124
Bme1390I CCNGG 7 cut(s) 495, 648, 753, 795, 930, 1014, 1185
Bme18I GGWCC 4 cut(s) 305, 791, 1181, 1190
BmgBI CACGTC 1 cut(s) 616
BmgT120I GGNCC 4 cut(s) 305, 791, 1181, 1190
BmiI GGNNCC 4 cut(s) 274, 288, 439, 457
BmrFI CCNGG 7 cut(s) 495, 648, 753, 795, 930, 1014, 1185
BmrI ACTGGG 1 cut(s) 360
BmsI GCATC 3 cut(s) 205, 819, 910
BmuI ACTGGG 1 cut(s) 360
BpmI CTGGAG 1 cut(s) 1206
BpuMI CCSGG 3 cut(s) 648, 753, 930
BsaAI YACGTR 1 cut(s) 944
BsaHI GRCGYC 1 cut(s) 780
BsaJI CCNNGG 6 cut(s) 376, 451, 751, 799, 820, 1012
BsaWI WCCGGW 3 cut(s) 289, 725, 1267
BsaXI ACNNNNNCTCC 2 cut(s) 240, 270
Bsc4I CCNNNNNNNGG 5 cut(s) 314, 465, 800, 1019, 1057
Bse118I RCCGGY 2 cut(s) 776, 1267
Bse1I ACTGG 5 cut(s) 62, 88, 366, 1254, 1331
Bse3DI GCAATG 1 cut(s) 521
BseBI CCWGG 4 cut(s) 495, 795, 1014, 1185
BseDI CCNNGG 6 cut(s) 376, 451, 751, 799, 820, 1012
BseGI GGATG 4 cut(s) 84, 925, 1066, 1250
BseLI CCNNNNNNNGG 5 cut(s) 314, 465, 800, 1019, 1057
BseMI GCAATG 1 cut(s) 521
BseMII CTCAG 2 cut(s) 152, 899
BseNI ACTGG 5 cut(s) 62, 88, 366, 1254, 1331
BseRI GAGGAG 1 cut(s) 261
BseXI GCAGC 3 cut(s) 210, 828, 1134
Bsh1236I CGCG 1 cut(s) 408
BshFI GGCC 4 cut(s) 206, 450, 498, 798
BshNI GGYRCC 1 cut(s) 272
BshTI ACCGGT 1 cut(s) 1267
BsiHKAI GWGCWC 2 cut(s) 175, 960
BsiSI CCGG 8 cut(s) 290, 647, 726, 753, 777, 929, 1193, 1268
BslFI GGGAC 1 cut(s) 642
BslI CCNNNNNNNGG 5 cut(s) 314, 465, 800, 1019, 1057
BsmAI GTCTC 4 cut(s) 174, 645, 723, 745
BsmBI CGTCTC 2 cut(s) 174, 723
BsmFI GGGAC 1 cut(s) 642
BsnI GGCC 4 cut(s) 206, 450, 498, 798
Bsp1286I GDGCHC 2 cut(s) 175, 960
Bsp143I GATC 4 cut(s) 317, 393, 755, 997
Bsp19I CCATGG 1 cut(s) 799
BspACI CCGC 4 cut(s) 93, 526, 789, 1196
BspANI GGCC 4 cut(s) 206, 450, 498, 798
BspCNI CTCAG 2 cut(s) 151, 898
BspFNI CGCG 1 cut(s) 408
BspLI GGNNCC 4 cut(s) 274, 288, 439, 457
BspMAI CTGCAG 1 cut(s) 872
BspPI GGATC 3 cut(s) 325, 401, 763
BspT107I GGYRCC 1 cut(s) 272
BsrDI GCAATG 1 cut(s) 521
BsrFI RCCGGY 2 cut(s) 776, 1267
BsrI ACTGG 5 cut(s) 62, 88, 366, 1254, 1331
BssAI RCCGGY 2 cut(s) 776, 1267
BssECI CCNNGG 6 cut(s) 376, 451, 751, 799, 820, 1012
BssMI GATC 4 cut(s) 317, 393, 755, 997
BssNI GRCGYC 1 cut(s) 780
BssSI CACGAG 1 cut(s) 174
BssT1I CCWWGG 2 cut(s) 376, 799
Bst2BI CACGAG 1 cut(s) 174
Bst2UI CCWGG 4 cut(s) 495, 795, 1014, 1185
Bst4CI ACNGT 4 cut(s) 256, 400, 656, 937
BstACI GRCGYC 1 cut(s) 780
BstBAI YACGTR 1 cut(s) 944
BstC8I GCNNGC 3 cut(s) 97, 506, 607
BstDEI CTNAG 4 cut(s) 100, 138, 357, 885
BstDSI CCRYGG 1 cut(s) 799
BstEII GGTNACC 1 cut(s) 341
BstF5I GGATG 4 cut(s) 84, 925, 1066, 1250
BstFNI CGCG 1 cut(s) 408
BstKTI GATC 4 cut(s) 320, 396, 758, 1000
BstMAI GTCTC 4 cut(s) 174, 645, 723, 745
BstMBI GATC 4 cut(s) 317, 393, 755, 997
BstMWI GCNNNNNNNGC 6 cut(s) 414, 786, 795, 816, 822, 920
BstNI CCWGG 4 cut(s) 495, 795, 1014, 1185
BstNSI RCATGY 1 cut(s) 609
BstPI GGTNACC 1 cut(s) 341
BstSCI CCNGG 7 cut(s) 493, 646, 751, 793, 928, 1012, 1183
BstSFI CTRYAG 1 cut(s) 868
BstUI CGCG 1 cut(s) 408
BstV1I GCAGC 3 cut(s) 210, 828, 1134
BsuI GTATCC 3 cut(s) 127, 703, 874
BsuRI GGCC 4 cut(s) 206, 450, 498, 798
BtgI CCRYGG 1 cut(s) 799
BtgZI GCGATG 1 cut(s) 552
BtrI CACGTC 1 cut(s) 616
BtsCI GGATG 4 cut(s) 84, 925, 1066, 1250
BtsIMutI CAGTG 5 cut(s) 55, 373, 1261, 1281, 1305
Cac8I GCNNGC 3 cut(s) 97, 506, 607
Cfr10I RCCGGY 2 cut(s) 776, 1267
Cfr13I GGNCC 4 cut(s) 305, 791, 1181, 1190
CseI GACGC 1 cut(s) 769
Csp6I GTAC 3 cut(s) 252, 401, 1330
CspAI ACCGGT 1 cut(s) 1267
CviAII CATG 7 cut(s) 134, 219, 280, 309, 606, 800, 909
CviQI GTAC 3 cut(s) 252, 401, 1330
DdeI CTNAG 4 cut(s) 100, 138, 357, 885
DpnI GATC 4 cut(s) 319, 395, 757, 999
DpnII GATC 4 cut(s) 317, 393, 755, 997
DrdI GACNNNNNNGTC 2 cut(s) 737, 1188
DseDI GACNNNNNNGTC 2 cut(s) 737, 1188
Eco130I CCWWGG 2 cut(s) 376, 799
Eco147I AGGCCT 1 cut(s) 206
Eco32I GATATC 1 cut(s) 1147
Eco47I GGWCC 4 cut(s) 305, 791, 1181, 1190
Eco57I CTGAAG 1 cut(s) 1175
Eco72I CACGTG 1 cut(s) 944
Eco91I GGTNACC 1 cut(s) 341
EcoO109I RGGNCCY 1 cut(s) 1181
EcoO65I GGTNACC 1 cut(s) 341
EcoRII CCWGG 4 cut(s) 493, 793, 1012, 1183
EcoRV GATATC 1 cut(s) 1147
EcoT14I CCWWGG 2 cut(s) 376, 799
EcoT22I ATGCAT 1 cut(s) 220
ErhI CCWWGG 2 cut(s) 376, 799
Esp3I CGTCTC 2 cut(s) 174, 723
FaeI CATG 7 cut(s) 137, 222, 283, 312, 609, 803, 912
FalI AAGNNNNNCTT 2 cut(s) 1120, 1152
FaqI GGGAC 1 cut(s) 642
FatI CATG 7 cut(s) 133, 218, 279, 308, 605, 799, 908
FbaI TGATCA 1 cut(s) 997
Fnu4HI GCNGC 3 cut(s) 199, 817, 1123
FokI GGATG 4 cut(s) 71, 932, 1073, 1237
Fsp4HI GCNGC 3 cut(s) 199, 817, 1123
FspBI CTAG 3 cut(s) 128, 302, 443
GluI GCNGC 3 cut(s) 199, 817, 1123
GsuI CTGGAG 1 cut(s) 1206
HaeIII GGCC 4 cut(s) 206, 450, 498, 798
HapII CCGG 8 cut(s) 290, 647, 726, 753, 777, 929, 1193, 1268
HgaI GACGC 1 cut(s) 769
Hin1I GRCGYC 1 cut(s) 780
Hin1II CATG 7 cut(s) 137, 222, 283, 312, 609, 803, 912
HincII GTYRAC 1 cut(s) 412
HindII GTYRAC 1 cut(s) 412
HindIII AAGCTT 1 cut(s) 76
HinfI GANTC 6 cut(s) 36, 672, 839, 873, 900, 1037
HpaI GTTAAC 1 cut(s) 412
HpaII CCGG 8 cut(s) 290, 647, 726, 753, 777, 929, 1193, 1268
HphI GGTGA 3 cut(s) 388, 766, 848
Hpy166II GTNNAC 3 cut(s) 412, 979, 1031
Hpy188I TCNGA 5 cut(s) 41, 141, 455, 486, 888
Hpy188III TCNNGA 4 cut(s) 634, 1001, 1051, 1142
Hpy8I GTNNAC 3 cut(s) 412, 979, 1031
HpyAV CCTTC 3 cut(s) 217, 286, 1150
HpyCH4III ACNGT 4 cut(s) 256, 400, 656, 937
HpyCH4IV ACGT 4 cut(s) 615, 630, 771, 943
HpyCH4V TGCA 6 cut(s) 218, 504, 605, 609, 870, 1122
HpyF10VI GCNNNNNNNGC 6 cut(s) 414, 786, 795, 816, 822, 920
HpyF3I CTNAG 4 cut(s) 100, 138, 357, 885
HpySE526I ACGT 4 cut(s) 615, 630, 771, 943
Hsp92I GRCGYC 1 cut(s) 780
Hsp92II CATG 7 cut(s) 137, 222, 283, 312, 609, 803, 912
Ksp22I TGATCA 1 cut(s) 997
KspAI GTTAAC 1 cut(s) 412
Kzo9I GATC 4 cut(s) 317, 393, 755, 997
LmnI GCTCC 4 cut(s) 227, 292, 455, 649
Lsp1109I GCAGC 3 cut(s) 210, 828, 1134
LweI GCATC 3 cut(s) 205, 819, 910
MaeI CTAG 3 cut(s) 128, 302, 443
MaeII ACGT 4 cut(s) 615, 630, 771, 943
MaeIII GTNAC 6 cut(s) 121, 341, 538, 772, 848, 1108
MalI GATC 4 cut(s) 319, 395, 757, 999
MboI GATC 4 cut(s) 317, 393, 755, 997
MboII GAAGA 4 cut(s) 198, 290, 1269, 1293
MhlI GDGCHC 2 cut(s) 175, 960
MluCI AATT 4 cut(s) 163, 326, 1286, 1310
MluI ACGCGT 1 cut(s) 406
MmeI TCCRAC 1 cut(s) 510
Mph1103I ATGCAT 1 cut(s) 220
MroXI GAANNNNTTC 1 cut(s) 937
MseI TTAA 6 cut(s) 62, 74, 411, 474, 768, 1065
MslI CAYNNNNRTG 2 cut(s) 278, 965
MspI CCGG 8 cut(s) 290, 647, 726, 753, 777, 929, 1193, 1268
MspR9I CCNGG 7 cut(s) 495, 648, 753, 795, 930, 1014, 1185
MvaI CCWGG 4 cut(s) 495, 795, 1014, 1185
MvnI CGCG 1 cut(s) 408
MwoI GCNNNNNNNGC 6 cut(s) 414, 786, 795, 816, 822, 920
NciI CCSGG 3 cut(s) 648, 753, 930
NcoI CCATGG 1 cut(s) 799
NdeII GATC 4 cut(s) 317, 393, 755, 997
NlaIII CATG 7 cut(s) 137, 222, 283, 312, 609, 803, 912
NlaIV GGNNCC 4 cut(s) 274, 288, 439, 457
NmeAIII GCCGAG 1 cut(s) 801
NmuCI GTSAC 3 cut(s) 538, 772, 848
NsiI ATGCAT 1 cut(s) 220
NspI RCATGY 1 cut(s) 609
PaeI GCATGC 1 cut(s) 609
PceI AGGCCT 1 cut(s) 206
PcsI WCGNNNNNNNCGW 1 cut(s) 777
PdmI GAANNNNTTC 1 cut(s) 937
PfeI GAWTC 6 cut(s) 36, 672, 839, 873, 900, 1037
PflMI CCANNNNNTGG 1 cut(s) 800
PfoI TCCNGGA 1 cut(s) 646
PinAI ACCGGT 1 cut(s) 1267
PkrI GCNGC 3 cut(s) 200, 818, 1124
PmaCI CACGTG 1 cut(s) 944
PmlI CACGTG 1 cut(s) 944
Ppu21I YACGTR 1 cut(s) 944
PpuMI RGGWCCY 1 cut(s) 1181
Psp5II RGGWCCY 1 cut(s) 1181
Psp6I CCWGG 4 cut(s) 493, 793, 1012, 1183
PspCI CACGTG 1 cut(s) 944
PspEI GGTNACC 1 cut(s) 341
PspGI CCWGG 4 cut(s) 493, 793, 1012, 1183
PspN4I GGNNCC 4 cut(s) 274, 288, 439, 457
PspPI GGNCC 4 cut(s) 305, 791, 1181, 1190
PspPPI RGGWCCY 1 cut(s) 1181
PstI CTGCAG 1 cut(s) 872
RsaI GTAC 3 cut(s) 253, 402, 1331
RsaNI GTAC 3 cut(s) 252, 401, 1330
RseI CAYNNNNRTG 2 cut(s) 278, 965
SaqAI TTAA 6 cut(s) 62, 74, 411, 474, 768, 1065
SatI GCNGC 3 cut(s) 199, 817, 1123
Sau3AI GATC 4 cut(s) 317, 393, 755, 997
Sau96I GGNCC 4 cut(s) 305, 791, 1181, 1190
ScrFI CCNGG 7 cut(s) 495, 648, 753, 795, 930, 1014, 1185
SduI GDGCHC 2 cut(s) 175, 960
SfaNI GCATC 3 cut(s) 205, 819, 910
SfcI CTRYAG 1 cut(s) 868
SgrAI CRCCGGYG 1 cut(s) 776
SinI GGWCC 4 cut(s) 305, 791, 1181, 1190
SmiMI CAYNNNNRTG 2 cut(s) 278, 965
SphI GCATGC 1 cut(s) 609
Sse9I AATT 4 cut(s) 163, 326, 1286, 1310
SseBI AGGCCT 1 cut(s) 206
SsiI CCGC 4 cut(s) 93, 526, 789, 1196
SspI AATATT 1 cut(s) 1007
SspMI CTAG 3 cut(s) 128, 302, 443
StuI AGGCCT 1 cut(s) 206
StyD4I CCNGG 7 cut(s) 493, 646, 751, 793, 928, 1012, 1183
StyI CCWWGG 2 cut(s) 376, 799
TaaI ACNGT 4 cut(s) 256, 400, 656, 937
TaiI ACGT 4 cut(s) 618, 633, 774, 946
TaqI TCGA 6 cut(s) 34, 153, 963, 1043, 1149, 1164
TasI AATT 4 cut(s) 163, 326, 1286, 1310
TfiI GAWTC 6 cut(s) 36, 672, 839, 873, 900, 1037
Tru1I TTAA 6 cut(s) 62, 74, 411, 474, 768, 1065
Tru9I TTAA 6 cut(s) 62, 74, 411, 474, 768, 1065
TscAI CASTG 5 cut(s) 62, 373, 1261, 1288, 1312
TseFI GTSAC 3 cut(s) 538, 772, 848
TseI GCWGC 3 cut(s) 198, 816, 1122
Tsp45I GTSAC 3 cut(s) 538, 772, 848
TspDTI ATGAA 7 cut(s) 17, 17, 73, 122, 199, 268, 1191
TspGWI ACGGA 4 cut(s) 109, 198, 733, 1191
TspRI CASTG 5 cut(s) 62, 373, 1261, 1288, 1312
Van91I CCANNNNNTGG 1 cut(s) 800
VpaK11BI GGWCC 4 cut(s) 305, 791, 1181, 1190
XceI RCATGY 1 cut(s) 609
XmnI GAANNNNTTC 1 cut(s) 937
XspI CTAG 3 cut(s) 128, 302, 443
Zsp2I ATGCAT 1 cut(s) 220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.