Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0002146

Physical Location & Seq

Genomic Coordinates Reverse (-)

13765706 .. 13767359

Gene Structure 1654 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G218900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1236 bp

ATGGTTTCCAGCTTGGTTGGTCAATTTGTTTGCATTGTGTTCTTCATGGTGGTATCCATTTCCAGAGTTCGAGCTAAGCAAACAGTTTTTGATGTGACGAAAAACGGCGGCGTTGCTGATGGAAAAACTGATAACAGCAAGGCCTTCACTGATGCATGGACTCAAGCTTGTCAAACAAATGGAGGTGGTGTGATCTTATTTCCAACCGGGAAATACTTGGTGAGGCCAGTGATTTTGAAAGGGGAATGCAAGGGGCCAATTGGGTTGCAGATAGAAGGGACCCTACTGGCTCCCCCGGGGGTCCAATCTTCGGTTGATATGGACCATTGGATCAAATTCCAACACGTTGACAACTTGGACATCAATGGTGGTGGTTTATTGGATGGGCAAGGACCCTCTGCTTGGCACCATAACAACTGCCTGGAAGATCCAGAATGCAAGCGACTCCCTGCAAATTTGAGATTTGATTTCGTCACAAATCTAAACATAGATCACATAACATCGATTAACAGCAAAAATCTCCACATCAACCTCTTTGCATGCCAAGACGTAAAAGTTACCAACGTTAACATATCAGCTCCCGCTGAAAGCCCCAACACCGACGGAATCCACATTGGTTCATCGTCCAACGTCCAAATTTTGGACTCCGTGATCGCCACCGGGGATGACTGCATATCCTTCAGTGCCGGATCAAGCAAGATCAATGTTAGCGGTGTTCACTGTGGACCAGGCCATGGAATGAGCATTGGAAGCCTTGGCAGGGGAAATAATAATAATGTTTCTTTTGTGGACATAAGAAACTGCTCCTTTGTTGGCACTGACAATGGAGTGAGAATCAAAACATGGGCTCCCTCTAAACAAGGCACTGTTTCACATGTTTACGTTGAGAACATTCGAATGGATCGGGTTAAAAACCCTATAGTCATCGATCAAAATTATTGCCCTGCTCGTAGGTGCAGTCCAACGGAATCATCCCAAATTCAGATTGTAGATGTCAAGATGATTAACATTTGGGGTACTTCAAGCACACCAAATGTTGTTACTCTCAAGTGTAGCGAAACGAAGCCGTGTCAGAAGATTCAGTTGAGAGACATCAACCTAAGTTACGAGGGTCCTGATGGACCGGCTGTATCAGCATGCTCAAAAGTAGATGTTATAACCGGTGGCAAACAAAACCCACCAGCTTGCACAAAACCTGTAATACAGGTGCCCCACAACTTTGATGTCCTAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Glyco_hydro_28

Protein Analysis

412

Amino Acids

44.15

Weight (kDa)

7.12

Isoelectric Point (pI)

43.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002146)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12491 FvH4_1g12500 FvH4_3g23740 FvH4_4g28770
malus_domestica	MD03G1196500.v1.1 MD11G1207000.v1.1
prunus_persica	Prupe.4G218900_v2.0.a1 Prupe.4G228600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0100401 RchiOBHm_Chr4g0436881 RchiOBHm_Chr5g0041901 RchiOBHm_Chr5g0041941
rosa_laevigata	RLG00000006489 RLG00000016970 RLG00000016994 RLG00000034104
rosa_multiflora	Rmu_sc0001095.1_g000011 Rmu_sc0001464.1_g000018 Rmu_sc0009443.1_g000011 Rmu_sc0010997.1_g000006
rosa_roxburghii	Rroxscaffold_2G00142280 Rroxscaffold_5G00377950
rosa_rugosa	Rorug02G0087800 Rorug04G0297000 Rorug05G0197100
rosa_samantha	Rh2AG137300 Rh2AG137500 Rh2BG140500 Rh2BG140700 Rh2CG142600 Rh2DG142500 Rh4AG351300 Rh4BG360300 Rh4CG374600 Rh4DG354600 Rh5AG281700 Rh5AG281900 Rh5BG287500 Rh5CG318800 Rh5DG296100 Rh5DG296400
rosa_wichuraiana	Rw0G001350 Rw2G010740 Rw4G030760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1157
AccB1I	GGYRCC	2 cut(s)	405, 1207
AccB7I	CCANNNNNTGG	2 cut(s)	640, 734
AciI	CCGC	3 cut(s)	108, 582, 711
AclI	AACGTT	1 cut(s)	564
AclWI	GGATC	4 cut(s)	338, 422, 697, 909
AcsI	RAATTY	4 cut(s)	335, 454, 636, 978
AcuI	CTGAAG	1 cut(s)	664
AfaI	GTAC	1 cut(s)	1018
AfiI	CCNNNNNNNGG	5 cut(s)	310, 402, 640, 734, 760
AflIII	ACRYGT	2 cut(s)	343, 874
AgeI	ACCGGT	1 cut(s)	1160
AgsI	TTSAA	2 cut(s)	238, 1023
AjnI	CCWGG	2 cut(s)	420, 727
AluBI	AGCT	5 cut(s)	12, 74, 167, 578, 1184
AluI	AGCT	5 cut(s)	12, 74, 167, 578, 1184
Alw26I	GTCTC	1 cut(s)	1083
AlwI	GGATC	4 cut(s)	338, 422, 697, 909
Ama87I	CYCGRG	1 cut(s)	295
AoxI	GGCC	4 cut(s)	141, 224, 254, 730
ApoI	RAATTY	4 cut(s)	335, 454, 636, 978
AsiGI	ACCGGT	1 cut(s)	1160
AspS9I	GGNCC	8 cut(s)	254, 279, 301, 322, 392, 725, 1112, 1121
AsuC2I	CCSGG	4 cut(s)	208, 296, 297, 661
AsuHPI	GGTGA	1 cut(s)	232
AsuII	TTCGAA	1 cut(s)	895
AvaI	CYCGRG	1 cut(s)	295
AvaII	GGWCC	7 cut(s)	279, 301, 322, 392, 725, 1112, 1121
BaeGI	GKGCMC	1 cut(s)	1212
BanI	GGYRCC	2 cut(s)	405, 1207
BanII	GRGCYC	1 cut(s)	850
BarI	GAAGNNNNNNTAC	2 cut(s)	267, 299
BccI	CCATC	3 cut(s)	113, 377, 1112
BceAI	ACGGC	2 cut(s)	121, 1051
BciT130I	CCWGG	2 cut(s)	422, 729
BciVI	GTATCC	1 cut(s)	64
BcnI	CCSGG	4 cut(s)	208, 296, 297, 661
BcoDI	GTCTC	1 cut(s)	1083
BfmI	CTRYAG	1 cut(s)	918
BfuI	GTATCC	1 cut(s)	64
BisI	GCNGC	1 cut(s)	109
BlpI	GCTNAGC	1 cut(s)	75
BlsI	GCNGC	1 cut(s)	110
Bme1390I	CCNGG	6 cut(s)	208, 296, 297, 422, 661, 729
Bme18I	GGWCC	7 cut(s)	279, 301, 322, 392, 725, 1112, 1121
BmeT110I	CYCGRG	1 cut(s)	295
BmgT120I	GGNCC	8 cut(s)	254, 279, 301, 322, 392, 725, 1112, 1121
BmrFI	CCNGG	6 cut(s)	208, 296, 297, 422, 661, 729
BmsI	GCATC	1 cut(s)	142
Bpu1102I	GCTNAGC	1 cut(s)	75
Bpu14I	TTCGAA	1 cut(s)	895
BpuEI	CTTGAG	2 cut(s)	147, 1031
BpuMI	CCSGG	4 cut(s)	208, 296, 297, 661
Bsa29I	ATCGAT	2 cut(s)	503, 927
BsaJI	CCNNGG	6 cut(s)	294, 295, 296, 660, 733, 754
BsaWI	WCCGGW	1 cut(s)	1160
BsaXI	ACNNNNNCTCC	4 cut(s)	174, 204, 832, 862
Bsc4I	CCNNNNNNNGG	5 cut(s)	310, 402, 640, 734, 760
Bse118I	RCCGGY	2 cut(s)	1123, 1160
Bse1I	ACTGG	2 cut(s)	227, 291
BseBI	CCWGG	2 cut(s)	422, 729
BseCI	ATCGAT	2 cut(s)	503, 927
BseDI	CCNNGG	6 cut(s)	294, 295, 296, 660, 733, 754
BseGI	GGATG	3 cut(s)	388, 670, 971
BseLI	CCNNNNNNNGG	5 cut(s)	310, 402, 640, 734, 760
BseNI	ACTGG	2 cut(s)	227, 291
BseSI	GKGCMC	1 cut(s)	1212
BsgI	GTGCAG	1 cut(s)	976
BshFI	GGCC	4 cut(s)	143, 226, 256, 732
BshNI	GGYRCC	2 cut(s)	405, 1207
BshTI	ACCGGT	1 cut(s)	1160
BshVI	ATCGAT	2 cut(s)	503, 927
BsiHKCI	CYCGRG	1 cut(s)	295
BsiSI	CCGG	6 cut(s)	207, 296, 660, 687, 1124, 1161
BslFI	GGGAC	1 cut(s)	292
BslI	CCNNNNNNNGG	5 cut(s)	310, 402, 640, 734, 760
BsmAI	GTCTC	1 cut(s)	1083
BsmFI	GGGAC	1 cut(s)	292
BsmI	GAATGC	2 cut(s)	251, 440
BsnI	GGCC	4 cut(s)	143, 226, 256, 732
BsoBI	CYCGRG	1 cut(s)	295
Bsp119I	TTCGAA	1 cut(s)	895
Bsp1286I	GDGCHC	2 cut(s)	850, 1212
Bsp143I	GATC	9 cut(s)	192, 330, 427, 490, 651, 689, 699, 901, 928
Bsp1720I	GCTNAGC	1 cut(s)	75
Bsp19I	CCATGG	1 cut(s)	733
BspACI	CCGC	3 cut(s)	108, 582, 711
BspANI	GGCC	4 cut(s)	143, 226, 256, 732
BspDI	ATCGAT	2 cut(s)	503, 927
BspPI	GGATC	4 cut(s)	338, 422, 697, 909
BspT104I	TTCGAA	1 cut(s)	895
BspT107I	GGYRCC	2 cut(s)	405, 1207
BsrFI	RCCGGY	2 cut(s)	1123, 1160
BsrI	ACTGG	2 cut(s)	227, 291
BssAI	RCCGGY	2 cut(s)	1123, 1160
BssECI	CCNNGG	6 cut(s)	294, 295, 296, 660, 733, 754
BssMI	GATC	9 cut(s)	192, 330, 427, 490, 651, 689, 699, 901, 928
BssT1I	CCWWGG	2 cut(s)	733, 754
Bst2UI	CCWGG	2 cut(s)	422, 729
Bst4CI	ACNGT	3 cut(s)	85, 722, 868
BstBI	TTCGAA	1 cut(s)	895
BstC8I	GCNNGC	4 cut(s)	440, 541, 1138, 1186
BstDEI	CTNAG	2 cut(s)	75, 1100
BstDSI	CCRYGG	1 cut(s)	733
BstF5I	GGATG	3 cut(s)	388, 670, 971
BstKTI	GATC	9 cut(s)	195, 333, 430, 493, 654, 692, 702, 904, 931
BstMAI	GTCTC	1 cut(s)	1083
BstMBI	GATC	9 cut(s)	192, 330, 427, 490, 651, 689, 699, 901, 928
BstMWI	GCNNNNNNNGC	2 cut(s)	750, 1133
BstNI	CCWGG	2 cut(s)	422, 729
BstNSI	RCATGY	3 cut(s)	543, 878, 1140
BstSCI	CCNGG	6 cut(s)	206, 294, 295, 420, 659, 727
BstSFI	CTRYAG	1 cut(s)	918
BstSLI	GKGCMC	1 cut(s)	1212
BstX2I	RGATCY	1 cut(s)	427
BstYI	RGATCY	1 cut(s)	427
Bsu15I	ATCGAT	2 cut(s)	503, 927
BsuI	GTATCC	1 cut(s)	64
BsuRI	GGCC	4 cut(s)	143, 226, 256, 732
BsuTUI	ATCGAT	2 cut(s)	503, 927
BtgI	CCRYGG	1 cut(s)	733
BtsCI	GGATG	3 cut(s)	388, 670, 971
BtsIMutI	CAGTG	6 cut(s)	147, 234, 688, 718, 816, 864
Cac8I	GCNNGC	4 cut(s)	440, 541, 1138, 1186
Cfr10I	RCCGGY	2 cut(s)	1123, 1160
Cfr13I	GGNCC	8 cut(s)	254, 279, 301, 322, 392, 725, 1112, 1121
Cfr9I	CCCGGG	1 cut(s)	295
ClaI	ATCGAT	2 cut(s)	503, 927
Csp6I	GTAC	1 cut(s)	1017
CspAI	ACCGGT	1 cut(s)	1160
CspCI	CAANNNNNGTGG	2 cut(s)	352, 387
CviAII	CATG	7 cut(s)	46, 156, 540, 734, 843, 875, 1137
CviQI	GTAC	1 cut(s)	1017
DdeI	CTNAG	2 cut(s)	75, 1100
DpnI	GATC	9 cut(s)	194, 332, 429, 492, 653, 691, 701, 903, 930
DpnII	GATC	9 cut(s)	192, 330, 427, 490, 651, 689, 699, 901, 928
Eco130I	CCWWGG	2 cut(s)	733, 754
Eco147I	AGGCCT	1 cut(s)	143
Eco24I	GRGCYC	1 cut(s)	850
Eco47I	GGWCC	7 cut(s)	279, 301, 322, 392, 725, 1112, 1121
Eco57I	CTGAAG	1 cut(s)	664
Eco88I	CYCGRG	1 cut(s)	295
EcoO109I	RGGNCCY	3 cut(s)	279, 392, 1112
EcoRII	CCWGG	2 cut(s)	420, 727
EcoT14I	CCWWGG	2 cut(s)	733, 754
EcoT22I	ATGCAT	1 cut(s)	157
EcoT38I	GRGCYC	1 cut(s)	850
ErhI	CCWWGG	2 cut(s)	733, 754
FaeI	CATG	7 cut(s)	49, 159, 543, 737, 846, 878, 1140
FaqI	GGGAC	1 cut(s)	292
FatI	CATG	7 cut(s)	45, 155, 539, 733, 842, 874, 1136
FauI	CCCGC	1 cut(s)	589
Fnu4HI	GCNGC	1 cut(s)	109
FokI	GGATG	3 cut(s)	395, 677, 958
FriOI	GRGCYC	1 cut(s)	850
Fsp4HI	GCNGC	1 cut(s)	109
GluI	GCNGC	1 cut(s)	109
HaeIII	GGCC	4 cut(s)	143, 226, 256, 732
HapII	CCGG	6 cut(s)	207, 296, 660, 687, 1124, 1161
Hin1II	CATG	7 cut(s)	49, 159, 543, 737, 846, 878, 1140
HincII	GTYRAC	2 cut(s)	349, 568
HindII	GTYRAC	2 cut(s)	349, 568
HindIII	AAGCTT	1 cut(s)	165
HinfI	GANTC	7 cut(s)	160, 444, 606, 644, 834, 968, 1078
HpaI	GTTAAC	1 cut(s)	568
HpaII	CCGG	6 cut(s)	207, 296, 660, 687, 1124, 1161
HphI	GGTGA	1 cut(s)	232
Hpy166II	GTNNAC	6 cut(s)	349, 568, 718, 725, 790, 880
Hpy188I	TCNGA	2 cut(s)	984, 1074
Hpy188III	TCNNGA	4 cut(s)	63, 431, 997, 1115
Hpy8I	GTNNAC	6 cut(s)	349, 568, 718, 725, 790, 880
Hpy99I	CGWCG	1 cut(s)	605
HpyAV	CCTTC	3 cut(s)	154, 269, 688
HpyCH4III	ACNGT	3 cut(s)	85, 722, 868
HpyCH4IV	ACGT	5 cut(s)	345, 549, 564, 630, 882
HpyF10VI	GCNNNNNNNGC	2 cut(s)	750, 1133
HpyF3I	CTNAG	2 cut(s)	75, 1100
HpySE526I	ACGT	5 cut(s)	345, 549, 564, 630, 882
Hsp92II	CATG	7 cut(s)	49, 159, 543, 737, 846, 878, 1140
KflI	GGGWCCC	1 cut(s)	279
KspAI	GTTAAC	1 cut(s)	568
Kzo9I	GATC	9 cut(s)	192, 330, 427, 490, 651, 689, 699, 901, 928
LmnI	GCTCC	4 cut(s)	295, 583, 809, 853
LweI	GCATC	1 cut(s)	142
MaeII	ACGT	5 cut(s)	345, 549, 564, 630, 882
MaeIII	GTNAC	5 cut(s)	94, 472, 556, 1039, 1103
MalI	GATC	9 cut(s)	194, 332, 429, 492, 653, 691, 701, 903, 930
MboI	GATC	9 cut(s)	192, 330, 427, 490, 651, 689, 699, 901, 928
MboII	GAAGA	4 cut(s)	34, 300, 437, 1087
MfeI	CAATTG	1 cut(s)	258
MflI	RGATCY	1 cut(s)	427
MhlI	GDGCHC	2 cut(s)	850, 1212
MluCI	AATT	8 cut(s)	23, 258, 335, 454, 636, 934, 978, 1231
MlyI	GAGTC	3 cut(s)	154, 438, 638
MmeI	TCCRAC	4 cut(s)	227, 364, 651, 986
MnlI	CCTC	6 cut(s)	176, 216, 406, 542, 862, 1102
Mph1103I	ATGCAT	1 cut(s)	157
MseI	TTAA	5 cut(s)	507, 567, 909, 1005, 1234
MslI	CAYNNNNRTG	1 cut(s)	896
MspA1I	CMGCKG	1 cut(s)	584
MspI	CCGG	6 cut(s)	207, 296, 660, 687, 1124, 1161
MspR9I	CCNGG	6 cut(s)	208, 296, 297, 422, 661, 729
MunI	CAATTG	1 cut(s)	258
Mva1269I	GAATGC	2 cut(s)	251, 440
MvaI	CCWGG	2 cut(s)	422, 729
MwoI	GCNNNNNNNGC	2 cut(s)	750, 1133
NciI	CCSGG	4 cut(s)	208, 296, 297, 661
NcoI	CCATGG	1 cut(s)	733
NdeII	GATC	9 cut(s)	192, 330, 427, 490, 651, 689, 699, 901, 928
NlaIII	CATG	7 cut(s)	49, 159, 543, 737, 846, 878, 1140
NmuCI	GTSAC	2 cut(s)	94, 472
NsiI	ATGCAT	1 cut(s)	157
NspI	RCATGY	3 cut(s)	543, 878, 1140
NspV	TTCGAA	1 cut(s)	895
PaeI	GCATGC	2 cut(s)	543, 1140
PceI	AGGCCT	1 cut(s)	143
PciI	ACATGT	1 cut(s)	874
PctI	GAATGC	2 cut(s)	251, 440
PfeI	GAWTC	4 cut(s)	606, 834, 968, 1078
PflMI	CCANNNNNTGG	2 cut(s)	640, 734
PinAI	ACCGGT	1 cut(s)	1160
PkrI	GCNGC	1 cut(s)	110
PleI	GAGTC	3 cut(s)	154, 438, 638
PpsI	GAGTC	3 cut(s)	154, 438, 638
PpuMI	RGGWCCY	3 cut(s)	279, 392, 1112
PscI	ACATGT	1 cut(s)	874
PsiI	TTATAA	1 cut(s)	1157
Psp1406I	AACGTT	1 cut(s)	564
Psp5II	RGGWCCY	3 cut(s)	279, 392, 1112
Psp6I	CCWGG	2 cut(s)	420, 727
PspGI	CCWGG	2 cut(s)	420, 727
PspPI	GGNCC	8 cut(s)	254, 279, 301, 322, 392, 725, 1112, 1121
PspPPI	RGGWCCY	3 cut(s)	279, 392, 1112
PsuI	RGATCY	1 cut(s)	427
RsaI	GTAC	1 cut(s)	1018
RsaNI	GTAC	1 cut(s)	1017
RseI	CAYNNNNRTG	1 cut(s)	896
SaqAI	TTAA	5 cut(s)	507, 567, 909, 1005, 1234
SatI	GCNGC	1 cut(s)	109
Sau3AI	GATC	9 cut(s)	192, 330, 427, 490, 651, 689, 699, 901, 928
Sau96I	GGNCC	8 cut(s)	254, 279, 301, 322, 392, 725, 1112, 1121
SchI	GAGTC	3 cut(s)	154, 438, 638
ScrFI	CCNGG	6 cut(s)	208, 296, 297, 422, 661, 729
SduI	GDGCHC	2 cut(s)	850, 1212
SfaNI	GCATC	1 cut(s)	142
SfcI	CTRYAG	1 cut(s)	918
SfuI	TTCGAA	1 cut(s)	895
SinI	GGWCC	7 cut(s)	279, 301, 322, 392, 725, 1112, 1121
SmaI	CCCGGG	1 cut(s)	297
SmiMI	CAYNNNNRTG	1 cut(s)	896
SmlI	CTYRAG	2 cut(s)	162, 1046
SmoI	CTYRAG	2 cut(s)	162, 1046
SphI	GCATGC	2 cut(s)	543, 1140
Sse9I	AATT	8 cut(s)	23, 258, 335, 454, 636, 934, 978, 1231
SseBI	AGGCCT	1 cut(s)	143
SsiI	CCGC	3 cut(s)	108, 582, 711
StuI	AGGCCT	1 cut(s)	143
StyD4I	CCNGG	6 cut(s)	206, 294, 295, 420, 659, 727
StyI	CCWWGG	2 cut(s)	733, 754
TaaI	ACNGT	3 cut(s)	85, 722, 868
TaiI	ACGT	5 cut(s)	348, 552, 567, 633, 885
TaqI	TCGA	4 cut(s)	70, 503, 895, 927
TasI	AATT	8 cut(s)	23, 258, 335, 454, 636, 934, 978, 1231
TauI	GCSGC	1 cut(s)	111
TfiI	GAWTC	4 cut(s)	606, 834, 968, 1078
Tru1I	TTAA	5 cut(s)	507, 567, 909, 1005, 1234
Tru9I	TTAA	5 cut(s)	507, 567, 909, 1005, 1234
TscAI	CASTG	6 cut(s)	154, 234, 688, 725, 823, 871
TseFI	GTSAC	2 cut(s)	94, 472
Tsp45I	GTSAC	2 cut(s)	94, 472
TspDTI	ATGAA	2 cut(s)	34, 609
TspGWI	ACGGA	3 cut(s)	618, 637, 980
TspMI	CCCGGG	1 cut(s)	295
TspRI	CASTG	6 cut(s)	154, 234, 688, 725, 823, 871
Van91I	CCANNNNNTGG	2 cut(s)	640, 734
VpaK11BI	GGWCC	7 cut(s)	279, 301, 322, 392, 725, 1112, 1121
XapI	RAATTY	4 cut(s)	335, 454, 636, 978
XceI	RCATGY	3 cut(s)	543, 878, 1140
XmaI	CCCGGG	1 cut(s)	295
Zsp2I	ATGCAT	1 cut(s)	157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.