Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0002146

Physical Location & Seq

Genomic Coordinates Forward (+)

14600874 .. 14603007

Gene Structure 2134 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G228600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

ATGGGCTCCAAATTTGTGCAATTTGTTTGCCTAGTGTTCTTGCTAGTATCCATTGTCAAAGTTGGAGCTCAGCAAGCAGTTTTTGATGTGATGAATCACGGCGGCGTTACGGATGGAAAAACTGATAACAGCAAGGTTTTCACTGATGTATGGAATCAAGCTTGCCAAAACAATGGAGGTGGTGTGGTCTTATTTCCAACCGGGACATACTTTGTGGAACCAGTGGTTTTGTATGGGGGATGCAAGGGACCAATTGGGGTGCAGATAGAGGGGACCCTACTGGCTCCCGAGGAGCTGGAATCTTCGGTTGATATCGACCATTGGATCGCCTTCCAATACGTTGATAACTTGGTAATCAATGGTGGTGGTTCACTTGATGGACAAGGACCCTCTGCTTGGCCCTTCAACGACTGCTTGAAAAATCCACAATGCAAGCGACTTCCTACTTCACTGCGATTGGATTTCGTCACTAATGCAAGCATAGATCGCATAACATCGATCAACAGCAAGAACGTGCACATCAACATTTTCGCATCCCAAAACATAACAATTAGCAACATCAAGATATCAGCTCCCGGCGACAGCCCCAACACCGACGGCATCCACCTTGGTTCATCACACAATATCCAGATCTTGGACTCGGTGATCGCCACTGGCGACGATTGCATATCCTTTAGCACCGGAACAAACAACGTGAACATTAGCGGCGTTCGCTGTGGACCGGGCCACGGAATCAGCATTGGAAGCCTTGGCAAGGTTGATGGTGACGATGTTTCATTCGTGGACATAAGAAACTGCAGTTTCGTCGGCACTCAAAATGGAGTGAGAGTCAAAACATGGGCTCCCTCTGAAGCAGGCACAGTTTCACATCTTAACGTTGAGAACATTGAAATGGATAATGTCGAAAACCCTATCATCATCGATCAACAATATTGCCCTTCTCGTAGTTGCAATGCAGAGGAATTCTCCAAAGTTCAGATTAAAGATGTTAAGTTTAAAAACATTTGGGGAACTTCAAGCACAAAATATGTTGTTACTCTCAAATGTAGCCAAACTTCACCCTGCCAGGAGATTGAGCTGACGGACATCAACCTAAATTACAATGGTCTTGAAGGATCGGGTGTATCAGCATGCTCAAACGTAGAAGTTGAAGCTTATGGCCAACAAACACCCCCGGCTTGCACAGAAAAGATAATGATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Glyco_hydro_28

Protein Analysis

401

Amino Acids

42.9

Weight (kDa)

4.77

Isoelectric Point (pI)

38.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002146)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12491 FvH4_1g12500 FvH4_3g23740 FvH4_4g28770
malus_domestica	MD03G1196500.v1.1 MD11G1207000.v1.1
prunus_persica	Prupe.4G218900_v2.0.a1 Prupe.4G228600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0100401 RchiOBHm_Chr4g0436881 RchiOBHm_Chr5g0041901 RchiOBHm_Chr5g0041941
rosa_laevigata	RLG00000006489 RLG00000016970 RLG00000016994 RLG00000034104
rosa_multiflora	Rmu_sc0001095.1_g000011 Rmu_sc0001464.1_g000018 Rmu_sc0009443.1_g000011 Rmu_sc0010997.1_g000006
rosa_roxburghii	Rroxscaffold_2G00142280 Rroxscaffold_5G00377950
rosa_rugosa	Rorug02G0087800 Rorug04G0297000 Rorug05G0197100
rosa_samantha	Rh2AG137300 Rh2AG137500 Rh2BG140500 Rh2BG140700 Rh2CG142600 Rh2DG142500 Rh4AG351300 Rh4BG360300 Rh4CG374600 Rh4DG354600 Rh5AG281700 Rh5AG281900 Rh5BG287500 Rh5CG318800 Rh5DG296100 Rh5DG296400
rosa_wichuraiana	Rw0G001350 Rw2G010740 Rw4G030760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	634
AciI	CCGC	2 cut(s)	102, 705
AclI	AACGTT	1 cut(s)	876
AclWI	GGATC	2 cut(s)	332, 1123
AcoI	YGGCCR	1 cut(s)	1159
AcsI	RAATTY	2 cut(s)	11, 962
AcuI	CTGAAG	1 cut(s)	870
AfiI	CCNNNNNNNGG	4 cut(s)	396, 634, 728, 754
AgsI	TTSAA	6 cut(s)	406, 418, 890, 1017, 1112, 1151
AjnI	CCWGG	1 cut(s)	1065
AluBI	AGCT	6 cut(s)	68, 161, 295, 572, 1078, 1154
AluI	AGCT	6 cut(s)	68, 161, 295, 572, 1078, 1154
Alw21I	GWGCWC	2 cut(s)	70, 519
Alw44I	GTGCAC	1 cut(s)	515
AlwI	GGATC	2 cut(s)	332, 1123
Ama87I	CYCGRG	1 cut(s)	287
AoxI	GGCC	3 cut(s)	398, 724, 1159
ApaLI	GTGCAC	1 cut(s)	515
ApoI	RAATTY	2 cut(s)	11, 962
AspS9I	GGNCC	6 cut(s)	248, 273, 386, 399, 719, 724
AsuC2I	CCSGG	4 cut(s)	202, 576, 723, 1175
AsuHPI	GGTGA	3 cut(s)	655, 776, 1050
AvaI	CYCGRG	1 cut(s)	287
AvaII	GGWCC	4 cut(s)	248, 273, 386, 719
BaeGI	GKGCMC	1 cut(s)	519
BalI	TGGCCA	1 cut(s)	1161
BanII	GRGCYC	3 cut(s)	8, 70, 844
BarI	GAAGNNNNNNTAC	2 cut(s)	1039, 1071
Bbv12I	GWGCWC	2 cut(s)	70, 519
BccI	CCATC	3 cut(s)	107, 371, 755
BceAI	ACGGC	2 cut(s)	115, 613
BcgI	CGANNNNNNTGC	2 cut(s)	787, 821
BciT130I	CCWGG	1 cut(s)	1067
BciVI	GTATCC	1 cut(s)	58
BcnI	CCSGG	4 cut(s)	202, 576, 723, 1175
BfaI	CTAG	2 cut(s)	32, 44
BfmI	CTRYAG	1 cut(s)	796
BfuI	GTATCC	1 cut(s)	58
BglII	AGATCT	1 cut(s)	630
BisI	GCNGC	2 cut(s)	103, 706
BlpI	GCTNAGC	1 cut(s)	69
BlsI	GCNGC	2 cut(s)	104, 707
Bme1390I	CCNGG	5 cut(s)	202, 576, 723, 1067, 1175
Bme18I	GGWCC	4 cut(s)	248, 273, 386, 719
BmeT110I	CYCGRG	1 cut(s)	287
BmgT120I	GGNCC	6 cut(s)	248, 273, 386, 399, 719, 724
BmiI	GGNNCC	8 cut(s)	7, 219, 249, 274, 275, 285, 388, 843
BmrFI	CCNGG	5 cut(s)	202, 576, 723, 1067, 1175
BmsI	GCATC	3 cut(s)	230, 542, 609
BplI	GAGNNNNNCTC	2 cut(s)	950, 982
Bpu1102I	GCTNAGC	1 cut(s)	69
BpuMI	CCSGG	4 cut(s)	202, 576, 723, 1175
Bsa29I	ATCGAT	2 cut(s)	497, 921
BsaJI	CCNNGG	5 cut(s)	288, 607, 727, 748, 1173
BsaWI	WCCGGW	1 cut(s)	680
BsaXI	ACNNNNNCTCC	6 cut(s)	168, 198, 813, 826, 843, 856
Bsc4I	CCNNNNNNNGG	4 cut(s)	396, 634, 728, 754
Bse1I	ACTGG	3 cut(s)	221, 285, 658
Bse3DI	GCAATG	1 cut(s)	958
BseBI	CCWGG	1 cut(s)	1067
BseCI	ATCGAT	2 cut(s)	497, 921
BseDI	CCNNGG	5 cut(s)	288, 607, 727, 748, 1173
BseGI	GGATG	4 cut(s)	118, 245, 533, 600
BseLI	CCNNNNNNNGG	4 cut(s)	396, 634, 728, 754
BseMI	GCAATG	1 cut(s)	958
BseMII	CTCAG	1 cut(s)	83
BseNI	ACTGG	3 cut(s)	221, 285, 658
BseRI	GAGGAG	1 cut(s)	305
BseSI	GKGCMC	1 cut(s)	519
BsgI	GTGCAG	1 cut(s)	281
BshFI	GGCC	3 cut(s)	400, 726, 1161
BshVI	ATCGAT	2 cut(s)	497, 921
BsiHKAI	GWGCWC	2 cut(s)	70, 519
BsiHKCI	CYCGRG	1 cut(s)	287
BsiSI	CCGG	5 cut(s)	201, 576, 681, 722, 1175
BslFI	GGGAC	3 cut(s)	217, 261, 286
BslI	CCNNNNNNNGG	4 cut(s)	396, 634, 728, 754
BsmFI	GGGAC	3 cut(s)	217, 261, 286
BsnI	GGCC	3 cut(s)	400, 726, 1161
BsoBI	CYCGRG	1 cut(s)	287
Bsp1286I	GDGCHC	4 cut(s)	8, 70, 519, 844
Bsp143I	GATC	7 cut(s)	324, 484, 498, 630, 645, 922, 1115
Bsp1720I	GCTNAGC	1 cut(s)	69
BspACI	CCGC	2 cut(s)	102, 705
BspANI	GGCC	3 cut(s)	400, 726, 1161
BspCNI	CTCAG	1 cut(s)	82
BspDI	ATCGAT	2 cut(s)	497, 921
BspLI	GGNNCC	8 cut(s)	7, 219, 249, 274, 275, 285, 388, 843
BspMAI	CTGCAG	1 cut(s)	800
BspPI	GGATC	2 cut(s)	332, 1123
BsrDI	GCAATG	1 cut(s)	958
BsrI	ACTGG	3 cut(s)	221, 285, 658
BssECI	CCNNGG	5 cut(s)	288, 607, 727, 748, 1173
BssMI	GATC	7 cut(s)	324, 484, 498, 630, 645, 922, 1115
BssT1I	CCWWGG	2 cut(s)	607, 748
Bst2UI	CCWGG	1 cut(s)	1067
Bst4CI	ACNGT	1 cut(s)	862
BstC8I	GCNNGC	7 cut(s)	75, 163, 434, 478, 856, 1132, 1180
BstDEI	CTNAG	1 cut(s)	69
BstDSI	CCRYGG	1 cut(s)	727
BstENI	CCTNNNNNAGG	1 cut(s)	752
BstF5I	GGATG	4 cut(s)	118, 245, 533, 600
BstKTI	GATC	7 cut(s)	327, 487, 501, 633, 648, 925, 1118
BstMBI	GATC	7 cut(s)	324, 484, 498, 630, 645, 922, 1115
BstMWI	GCNNNNNNNGC	5 cut(s)	74, 486, 663, 711, 744
BstNI	CCWGG	1 cut(s)	1067
BstNSI	RCATGY	1 cut(s)	1134
BstSCI	CCNGG	5 cut(s)	200, 574, 721, 1065, 1173
BstSFI	CTRYAG	1 cut(s)	796
BstSLI	GKGCMC	1 cut(s)	519
BstX2I	RGATCY	1 cut(s)	630
BstXI	CCANNNNNNTGG	1 cut(s)	173
BstYI	RGATCY	1 cut(s)	630
Bsu15I	ATCGAT	2 cut(s)	497, 921
BsuI	GTATCC	1 cut(s)	58
BsuRI	GGCC	3 cut(s)	400, 726, 1161
BsuTUI	ATCGAT	2 cut(s)	497, 921
BtgI	CCRYGG	1 cut(s)	727
BtsCI	GGATG	4 cut(s)	118, 245, 533, 600
BtsI	GCAGTG	1 cut(s)	449
BtsIMutI	CAGTG	4 cut(s)	141, 228, 449, 651
Cac8I	GCNNGC	7 cut(s)	75, 163, 434, 478, 856, 1132, 1180
Cfr13I	GGNCC	6 cut(s)	248, 273, 386, 399, 719, 724
ClaI	ATCGAT	2 cut(s)	497, 921
CspCI	CAANNNNNGTGG	4 cut(s)	160, 195, 346, 381
CviAII	CATG	2 cut(s)	837, 1131
DdeI	CTNAG	1 cut(s)	69
DpnI	GATC	7 cut(s)	326, 486, 500, 632, 647, 924, 1117
DpnII	GATC	7 cut(s)	324, 484, 498, 630, 645, 922, 1115
DraI	TTTAAA	1 cut(s)	997
EaeI	YGGCCR	1 cut(s)	1159
Ecl136II	GAGCTC	1 cut(s)	68
Eco130I	CCWWGG	2 cut(s)	607, 748
Eco24I	GRGCYC	3 cut(s)	8, 70, 844
Eco32I	GATATC	2 cut(s)	313, 567
Eco47I	GGWCC	4 cut(s)	248, 273, 386, 719
Eco53kI	GAGCTC	1 cut(s)	68
Eco57I	CTGAAG	1 cut(s)	870
Eco88I	CYCGRG	1 cut(s)	287
EcoICRI	GAGCTC	1 cut(s)	68
EcoNI	CCTNNNNNAGG	1 cut(s)	752
EcoO109I	RGGNCCY	2 cut(s)	273, 386
EcoRI	GAATTC	1 cut(s)	962
EcoRII	CCWGG	1 cut(s)	1065
EcoRV	GATATC	2 cut(s)	313, 567
EcoT14I	CCWWGG	2 cut(s)	607, 748
EcoT38I	GRGCYC	3 cut(s)	8, 70, 844
ErhI	CCWWGG	2 cut(s)	607, 748
FaeI	CATG	2 cut(s)	840, 1134
FaqI	GGGAC	3 cut(s)	217, 261, 286
FatI	CATG	2 cut(s)	836, 1130
Fnu4HI	GCNGC	2 cut(s)	103, 706
FokI	GGATG	4 cut(s)	125, 252, 520, 587
FriOI	GRGCYC	3 cut(s)	8, 70, 844
Fsp4HI	GCNGC	2 cut(s)	103, 706
FspBI	CTAG	2 cut(s)	32, 44
GluI	GCNGC	2 cut(s)	103, 706
HaeIII	GGCC	3 cut(s)	400, 726, 1161
HapII	CCGG	5 cut(s)	201, 576, 681, 722, 1175
Hin1II	CATG	2 cut(s)	840, 1134
HindIII	AAGCTT	2 cut(s)	159, 1152
HinfI	GANTC	6 cut(s)	94, 154, 299, 638, 732, 828
HpaII	CCGG	5 cut(s)	201, 576, 681, 722, 1175
HphI	GGTGA	3 cut(s)	655, 776, 1050
Hpy166II	GTNNAC	5 cut(s)	371, 517, 697, 719, 784
Hpy188I	TCNGA	2 cut(s)	850, 978
Hpy188III	TCNNGA	4 cut(s)	287, 562, 628, 1109
Hpy8I	GTNNAC	5 cut(s)	371, 517, 697, 719, 784
Hpy99I	CGWCG	3 cut(s)	599, 662, 809
HpyAV	CCTTC	4 cut(s)	340, 412, 948, 1106
HpyCH4III	ACNGT	1 cut(s)	862
HpyCH4IV	ACGT	5 cut(s)	339, 513, 693, 876, 1140
HpyF10VI	GCNNNNNNNGC	5 cut(s)	74, 486, 663, 711, 744
HpyF3I	CTNAG	1 cut(s)	69
HpySE526I	ACGT	5 cut(s)	339, 513, 693, 876, 1140
Hsp92II	CATG	2 cut(s)	840, 1134
KflI	GGGWCCC	1 cut(s)	273
Kzo9I	GATC	7 cut(s)	324, 484, 498, 630, 645, 922, 1115
LmnI	GCTCC	6 cut(s)	11, 65, 289, 292, 577, 847
LweI	GCATC	3 cut(s)	230, 542, 609
MaeI	CTAG	2 cut(s)	32, 44
MaeII	ACGT	5 cut(s)	339, 513, 693, 876, 1140
MaeIII	GTNAC	4 cut(s)	106, 466, 764, 1033
MalI	GATC	7 cut(s)	326, 486, 500, 632, 647, 924, 1117
MboI	GATC	7 cut(s)	324, 484, 498, 630, 645, 922, 1115
MboII	GAAGA	1 cut(s)	294
MfeI	CAATTG	1 cut(s)	252
MflI	RGATCY	1 cut(s)	630
MhlI	GDGCHC	4 cut(s)	8, 70, 519, 844
MlsI	TGGCCA	1 cut(s)	1161
MluCI	AATT	6 cut(s)	11, 20, 252, 549, 962, 1096
MluNI	TGGCCA	1 cut(s)	1161
MlyI	GAGTC	2 cut(s)	632, 837
MmeI	TCCRAC	2 cut(s)	43, 221
MnlI	CCTC	6 cut(s)	170, 262, 283, 400, 856, 952
Mox20I	TGGCCA	1 cut(s)	1161
MscI	TGGCCA	1 cut(s)	1161
MseI	TTAA	4 cut(s)	873, 981, 990, 996
MslI	CAYNNNNRTG	1 cut(s)	890
Msp20I	TGGCCA	1 cut(s)	1161
MspI	CCGG	5 cut(s)	201, 576, 681, 722, 1175
MspR9I	CCNGG	5 cut(s)	202, 576, 723, 1067, 1175
MunI	CAATTG	1 cut(s)	252
MvaI	CCWGG	1 cut(s)	1067
MwoI	GCNNNNNNNGC	5 cut(s)	74, 486, 663, 711, 744
NciI	CCSGG	4 cut(s)	202, 576, 723, 1175
NdeII	GATC	7 cut(s)	324, 484, 498, 630, 645, 922, 1115
NlaIII	CATG	2 cut(s)	840, 1134
NlaIV	GGNNCC	8 cut(s)	7, 219, 249, 274, 275, 285, 388, 843
NmuCI	GTSAC	2 cut(s)	466, 764
NspI	RCATGY	1 cut(s)	1134
PaeI	GCATGC	1 cut(s)	1134
PcsI	WCGNNNNNNNCGW	1 cut(s)	654
PfeI	GAWTC	4 cut(s)	94, 154, 299, 732
PflMI	CCANNNNNTGG	1 cut(s)	634
PkrI	GCNGC	2 cut(s)	104, 707
PleI	GAGTC	2 cut(s)	632, 836
PpsI	GAGTC	2 cut(s)	632, 836
PpuMI	RGGWCCY	2 cut(s)	273, 386
Psp124BI	GAGCTC	1 cut(s)	70
Psp1406I	AACGTT	1 cut(s)	876
Psp5II	RGGWCCY	2 cut(s)	273, 386
Psp6I	CCWGG	1 cut(s)	1065
PspGI	CCWGG	1 cut(s)	1065
PspN4I	GGNNCC	8 cut(s)	7, 219, 249, 274, 275, 285, 388, 843
PspPI	GGNCC	6 cut(s)	248, 273, 386, 399, 719, 724
PspPPI	RGGWCCY	2 cut(s)	273, 386
PstI	CTGCAG	1 cut(s)	800
PsuI	RGATCY	1 cut(s)	630
RseI	CAYNNNNRTG	1 cut(s)	890
SacI	GAGCTC	1 cut(s)	70
SaqAI	TTAA	4 cut(s)	873, 981, 990, 996
SatI	GCNGC	2 cut(s)	103, 706
Sau3AI	GATC	7 cut(s)	324, 484, 498, 630, 645, 922, 1115
Sau96I	GGNCC	6 cut(s)	248, 273, 386, 399, 719, 724
SchI	GAGTC	2 cut(s)	632, 837
ScrFI	CCNGG	5 cut(s)	202, 576, 723, 1067, 1175
SduI	GDGCHC	4 cut(s)	8, 70, 519, 844
SfaNI	GCATC	3 cut(s)	230, 542, 609
SfcI	CTRYAG	1 cut(s)	796
SinI	GGWCC	4 cut(s)	248, 273, 386, 719
SmiMI	CAYNNNNRTG	1 cut(s)	890
SphI	GCATGC	1 cut(s)	1134
Sse9I	AATT	6 cut(s)	11, 20, 252, 549, 962, 1096
SsiI	CCGC	2 cut(s)	102, 705
SspI	AATATT	1 cut(s)	932
SspMI	CTAG	2 cut(s)	32, 44
SstI	GAGCTC	1 cut(s)	70
StyD4I	CCNGG	5 cut(s)	200, 574, 721, 1065, 1173
StyI	CCWWGG	2 cut(s)	607, 748
TaaI	ACNGT	1 cut(s)	862
TaiI	ACGT	5 cut(s)	342, 516, 696, 879, 1143
TaqI	TCGA	4 cut(s)	315, 497, 903, 921
TasI	AATT	6 cut(s)	11, 20, 252, 549, 962, 1096
TauI	GCSGC	2 cut(s)	105, 708
TfiI	GAWTC	4 cut(s)	94, 154, 299, 732
Tru1I	TTAA	4 cut(s)	873, 981, 990, 996
Tru9I	TTAA	4 cut(s)	873, 981, 990, 996
TscAI	CASTG	4 cut(s)	148, 228, 456, 658
TseFI	GTSAC	2 cut(s)	466, 764
Tsp45I	GTSAC	2 cut(s)	466, 764
TspDTI	ATGAA	3 cut(s)	107, 603, 765
TspGWI	ACGGA	3 cut(s)	125, 744, 1097
TspRI	CASTG	4 cut(s)	148, 228, 456, 658
Van91I	CCANNNNNTGG	1 cut(s)	634
VneI	GTGCAC	1 cut(s)	515
VpaK11BI	GGWCC	4 cut(s)	248, 273, 386, 719
XagI	CCTNNNNNAGG	1 cut(s)	752
XapI	RAATTY	2 cut(s)	11, 962
XceI	RCATGY	1 cut(s)	1134
XspI	CTAG	2 cut(s)	32, 44

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.