Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010997.1

Orthogroup ID

OG0002146

Physical Location & Seq

Genomic Coordinates Reverse (-)

15834 .. 18708

Gene Structure 2875 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010997.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

atgaaaactttcaatgtaaaccaatatggtggtgttgcagatggaaaaactgataacagcaaggcttttactgatgcatggaatcaagcttgccaaaacaatggaggtggtgtggtcttgtttcagcaagggatatatttggtgaaccctttggttttagaaggctcttgcaagggaccgatggagttgcagatccagggtaccttattggcttcaagcgagtaccagtactcggttggtattgaccattggatcgtcgtccaatacattgacaacttagtaattagtggtggagggacgttcgatggccaaggagcctcttcttggccctataacgactgtcgcaaaaacccacagtgcaaggcactgcctgcgtcattgaggttcaactttgccaataatacaaagattgacaacataactctcatcaacagcaagaacaccaacatccaccttttcgcaggtcttaatgtgataatcagcaacattaacataagtgccccggccgacagccccaacaccgatggaatcaaagtcggtagttcaagcatcgtccaaatatatgattctgtaatatccaccggagatgactgcatagctttccttcctgaatcaaccaaccttaacgttactaacgttcactgcgggcctggccatggaattagtgtaggaagcatttccagtaactctattactggcttgaacgtaaggaattgcagcttcgtaggtactcagaatggtgttagaatcaagacgaagagtccctctcaaccaggaactgttgcacaagttacatttgaaaacattgaaatggataaggtcaataatcccatcatcattgatcaacaatattgcgctagtagtggctgtattcctcaggtgtggaacccccacacctgggttcgaatcccgccgacgcttattggagttaaatcccaatatagtcttggtggtcaggtggaggaagcgttctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Glyco_hydro_28

Protein Analysis

324

Amino Acids

34.71

Weight (kDa)

5.48

Isoelectric Point (pI)

29.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002146)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12491 FvH4_1g12500 FvH4_3g23740 FvH4_4g28770
malus_domestica	MD03G1196500.v1.1 MD11G1207000.v1.1
prunus_persica	Prupe.4G218900_v2.0.a1 Prupe.4G228600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0100401 RchiOBHm_Chr4g0436881 RchiOBHm_Chr5g0041901 RchiOBHm_Chr5g0041941
rosa_laevigata	RLG00000006489 RLG00000016970 RLG00000016994 RLG00000034104
rosa_multiflora	Rmu_sc0001095.1_g000011 Rmu_sc0001464.1_g000018 Rmu_sc0009443.1_g000011 Rmu_sc0010997.1_g000006
rosa_roxburghii	Rroxscaffold_2G00142280 Rroxscaffold_5G00377950
rosa_rugosa	Rorug02G0087800 Rorug04G0297000 Rorug05G0197100
rosa_samantha	Rh2AG137300 Rh2AG137500 Rh2BG140500 Rh2BG140700 Rh2CG142600 Rh2DG142500 Rh4AG351300 Rh4BG360300 Rh4CG374600 Rh4DG354600 Rh5AG281700 Rh5AG281900 Rh5BG287500 Rh5CG318800 Rh5DG296100 Rh5DG296400
rosa_wichuraiana	Rw0G001350 Rw2G010740 Rw4G030760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	452
Acc65I	GGTACC	1 cut(s)	200
AccB1I	GGYRCC	1 cut(s)	200
AciI	CCGC	2 cut(s)	645, 911
AclI	AACGTT	2 cut(s)	627, 636
AclWI	GGATC	2 cut(s)	187, 260
AcoI	YGGCCR	3 cut(s)	307, 504, 652
AfaI	GTAC	4 cut(s)	202, 224, 230, 730
AfiI	CCNNNNNNNGG	5 cut(s)	232, 324, 656, 897, 898
AgsI	TTSAA	7 cut(s)	13, 216, 388, 546, 703, 800, 809
AhdI	GACNNNNNGTC	1 cut(s)	759
AjnI	CCWGG	4 cut(s)	195, 649, 772, 896
AloI	GAACNNNNNNTCC	1 cut(s)	953
AluBI	AGCT	3 cut(s)	89, 599, 720
AluI	AGCT	3 cut(s)	89, 599, 720
AlwI	GGATC	2 cut(s)	187, 260
AlwNI	CAGNNNCTG	1 cut(s)	779
AoxI	GGCC	5 cut(s)	307, 326, 504, 647, 652
ApeKI	GCWGC	1 cut(s)	717
Asp700I	GAANNNNTTC	2 cut(s)	8, 676
Asp718I	GGTACC	1 cut(s)	200
AspLEI	GCGC	1 cut(s)	857
AspS9I	GGNCC	3 cut(s)	176, 327, 647
AsuC2I	CCSGG	1 cut(s)	503
AsuHPI	GGTGA	1 cut(s)	154
AsuII	TTCGAA	1 cut(s)	904
AvaII	GGWCC	1 cut(s)	176
AxyI	CCTNAGG	1 cut(s)	876
BaeGI	GKGCMC	1 cut(s)	502
BalI	TGGCCA	2 cut(s)	309, 654
BanI	GGYRCC	1 cut(s)	200
BbvI	GCAGC	1 cut(s)	729
BccI	CCATC	5 cut(s)	35, 175, 299, 518, 839
BcgI	CGANNNNNNTGC	2 cut(s)	169, 203
BciT130I	CCWGG	4 cut(s)	197, 651, 774, 898
BclI	TGATCA	1 cut(s)	841
BcnI	CCSGG	1 cut(s)	503
BfaI	CTAG	1 cut(s)	858
BfuAI	ACCTGC	1 cut(s)	452
BisI	GCNGC	1 cut(s)	718
BlsI	GCNGC	1 cut(s)	719
BmcAI	AGTACT	1 cut(s)	230
Bme1390I	CCNGG	5 cut(s)	197, 503, 651, 774, 898
Bme18I	GGWCC	1 cut(s)	176
BmeRI	GACNNNNNGTC	1 cut(s)	759
BmgT120I	GGNCC	3 cut(s)	176, 327, 647
BmiI	GGNNCC	4 cut(s)	177, 202, 316, 887
BmrFI	CCNGG	5 cut(s)	197, 503, 651, 774, 898
BmsI	GCATC	2 cut(s)	64, 558
BplI	GAGNNNNNCTC	2 cut(s)	751, 783
Bpu14I	TTCGAA	1 cut(s)	904
BpuMI	CCSGG	1 cut(s)	503
BsaJI	CCNNGG	5 cut(s)	196, 310, 501, 655, 897
BsaWI	WCCGGW	1 cut(s)	581
BsaXI	ACNNNNNCTCC	3 cut(s)	96, 126, 953
Bsc4I	CCNNNNNNNGG	5 cut(s)	232, 324, 656, 897, 898
Bse1I	ACTGG	3 cut(s)	226, 681, 700
Bse21I	CCTNAGG	1 cut(s)	876
BseBI	CCWGG	4 cut(s)	197, 651, 774, 898
BseDI	CCNNGG	5 cut(s)	196, 310, 501, 655, 897
BseGI	GGATG	1 cut(s)	447
BseLI	CCNNNNNNNGG	5 cut(s)	232, 324, 656, 897, 898
BseMII	CTCAG	2 cut(s)	746, 890
BseNI	ACTGG	3 cut(s)	226, 681, 700
BseSI	GKGCMC	1 cut(s)	502
BseX3I	CGGCCG	1 cut(s)	504
BseXI	GCAGC	1 cut(s)	729
Bsh1285I	CGRYCG	1 cut(s)	507
BshFI	GGCC	5 cut(s)	309, 328, 506, 649, 654
BshNI	GGYRCC	1 cut(s)	200
BsiEI	CGRYCG	1 cut(s)	507
BsiSI	CCGG	2 cut(s)	503, 582
BslFI	GGGAC	3 cut(s)	189, 310, 747
BslI	CCNNNNNNNGG	5 cut(s)	232, 324, 656, 897, 898
BsmFI	GGGAC	3 cut(s)	189, 310, 747
BsnI	GGCC	5 cut(s)	309, 328, 506, 649, 654
Bsp119I	TTCGAA	1 cut(s)	904
Bsp1286I	GDGCHC	1 cut(s)	502
Bsp143I	GATC	3 cut(s)	192, 252, 841
Bsp19I	CCATGG	1 cut(s)	655
BspACI	CCGC	2 cut(s)	645, 911
BspANI	GGCC	5 cut(s)	309, 328, 506, 649, 654
BspCNI	CTCAG	2 cut(s)	745, 889
BspLI	GGNNCC	4 cut(s)	177, 202, 316, 887
BspMI	ACCTGC	1 cut(s)	452
BspPI	GGATC	2 cut(s)	187, 260
BspT104I	TTCGAA	1 cut(s)	904
BspT107I	GGYRCC	1 cut(s)	200
BsrI	ACTGG	3 cut(s)	226, 681, 700
BssECI	CCNNGG	5 cut(s)	196, 310, 501, 655, 897
BssMI	GATC	3 cut(s)	192, 252, 841
BssT1I	CCWWGG	2 cut(s)	310, 655
Bst2UI	CCWGG	4 cut(s)	197, 651, 774, 898
Bst4CI	ACNGT	3 cut(s)	341, 357, 781
Bst6I	CTCTTC	2 cut(s)	325, 752
BstAPI	GCANNNNNTGC	1 cut(s)	371
BstBI	TTCGAA	1 cut(s)	904
BstC8I	GCNNGC	3 cut(s)	91, 372, 647
BstDEI	CTNAG	3 cut(s)	277, 732, 876
BstDSI	CCRYGG	1 cut(s)	655
BstF5I	GGATG	1 cut(s)	447
BstHHI	GCGC	1 cut(s)	857
BstKTI	GATC	3 cut(s)	195, 255, 844
BstMBI	GATC	3 cut(s)	192, 252, 841
BstMCI	CGRYCG	1 cut(s)	507
BstMWI	GCNNNNNNNGC	2 cut(s)	371, 651
BstNI	CCWGG	4 cut(s)	197, 651, 774, 898
BstSCI	CCNGG	5 cut(s)	195, 501, 649, 772, 896
BstSLI	GKGCMC	1 cut(s)	502
BstV1I	GCAGC	1 cut(s)	729
BstX2I	RGATCY	1 cut(s)	192
BstXI	CCANNNNNNTGG	2 cut(s)	29, 101
BstYI	RGATCY	1 cut(s)	192
BstZI	CGGCCG	1 cut(s)	504
Bsu36I	CCTNAGG	1 cut(s)	876
BsuRI	GGCC	5 cut(s)	309, 328, 506, 649, 654
BtgI	CCRYGG	1 cut(s)	655
BtsCI	GGATG	1 cut(s)	447
BtsI	GCAGTG	2 cut(s)	365, 640
BtsIMutI	CAGTG	3 cut(s)	362, 365, 640
BveI	ACCTGC	1 cut(s)	452
Cac8I	GCNNGC	3 cut(s)	91, 372, 647
CaiI	CAGNNNCTG	1 cut(s)	779
CfoI	GCGC	1 cut(s)	857
Cfr13I	GGNCC	3 cut(s)	176, 327, 647
CseI	GACGC	2 cut(s)	363, 925
Csp6I	GTAC	4 cut(s)	201, 223, 229, 729
CspCI	CAANNNNNGTGG	2 cut(s)	88, 123
CviAII	CATG	2 cut(s)	78, 656
CviQI	GTAC	4 cut(s)	201, 223, 229, 729
DdeI	CTNAG	3 cut(s)	277, 732, 876
DpnI	GATC	3 cut(s)	194, 254, 843
DpnII	GATC	3 cut(s)	192, 252, 841
DriI	GACNNNNNGTC	1 cut(s)	759
EaeI	YGGCCR	3 cut(s)	307, 504, 652
EagI	CGGCCG	1 cut(s)	504
Eam1104I	CTCTTC	2 cut(s)	325, 752
Eam1105I	GACNNNNNGTC	1 cut(s)	759
EarI	CTCTTC	2 cut(s)	325, 752
EclXI	CGGCCG	1 cut(s)	504
Eco130I	CCWWGG	2 cut(s)	310, 655
Eco47I	GGWCC	1 cut(s)	176
Eco52I	CGGCCG	1 cut(s)	504
Eco81I	CCTNAGG	1 cut(s)	876
EcoRII	CCWGG	4 cut(s)	195, 649, 772, 896
EcoT14I	CCWWGG	2 cut(s)	310, 655
EcoT22I	ATGCAT	1 cut(s)	79
ErhI	CCWWGG	2 cut(s)	310, 655
FaeI	CATG	2 cut(s)	81, 659
FaqI	GGGAC	3 cut(s)	189, 310, 747
FatI	CATG	2 cut(s)	77, 655
FauI	CCCGC	2 cut(s)	638, 918
FbaI	TGATCA	1 cut(s)	841
Fnu4HI	GCNGC	1 cut(s)	718
FokI	GGATG	1 cut(s)	434
Fsp4HI	GCNGC	1 cut(s)	718
FspBI	CTAG	1 cut(s)	858
GlaI	GCGC	1 cut(s)	856
GluI	GCNGC	1 cut(s)	718
HaeIII	GGCC	5 cut(s)	309, 328, 506, 649, 654
HapII	CCGG	2 cut(s)	503, 582
HgaI	GACGC	2 cut(s)	363, 925
HhaI	GCGC	1 cut(s)	857
Hin1II	CATG	2 cut(s)	81, 659
Hin6I	GCGC	1 cut(s)	855
HinP1I	GCGC	1 cut(s)	855
HindIII	AAGCTT	1 cut(s)	87
HinfI	GANTC	7 cut(s)	82, 528, 566, 611, 747, 760, 906
HpaII	CCGG	2 cut(s)	503, 582
HphI	GGTGA	1 cut(s)	154
Hpy166II	GTNNAC	3 cut(s)	19, 145, 640
Hpy188I	TCNGA	2 cut(s)	735, 974
Hpy188III	TCNNGA	2 cut(s)	608, 751
Hpy8I	GTNNAC	3 cut(s)	19, 145, 640
Hpy99I	CGWCG	2 cut(s)	260, 919
HpyAV	CCTTC	2 cut(s)	155, 614
HpyCH4III	ACNGT	3 cut(s)	341, 357, 781
HpyCH4IV	ACGT	4 cut(s)	299, 627, 636, 705
HpyCH4V	TGCA	8 cut(s)	38, 77, 171, 190, 360, 594, 717, 785
HpyF10VI	GCNNNNNNNGC	2 cut(s)	371, 651
HpyF3I	CTNAG	3 cut(s)	277, 732, 876
HpySE526I	ACGT	4 cut(s)	299, 627, 636, 705
Hsp92II	CATG	2 cut(s)	81, 659
HspAI	GCGC	1 cut(s)	855
KpnI	GGTACC	1 cut(s)	204
Ksp22I	TGATCA	1 cut(s)	841
Kzo9I	GATC	3 cut(s)	192, 252, 841
LmnI	GCTCC	1 cut(s)	314
Lsp1109I	GCAGC	1 cut(s)	729
LweI	GCATC	2 cut(s)	64, 558
MaeI	CTAG	1 cut(s)	858
MaeII	ACGT	4 cut(s)	299, 627, 636, 705
MaeIII	GTNAC	3 cut(s)	628, 683, 790
MalI	GATC	3 cut(s)	194, 254, 843
MboI	GATC	3 cut(s)	192, 252, 841
MboII	GAAGA	2 cut(s)	312, 769
MflI	RGATCY	1 cut(s)	192
MhlI	GDGCHC	1 cut(s)	502
MlsI	TGGCCA	2 cut(s)	309, 654
MluCI	AATT	3 cut(s)	282, 660, 712
MluNI	TGGCCA	2 cut(s)	309, 654
MlyI	GAGTC	1 cut(s)	769
MnlI	CCTC	7 cut(s)	98, 287, 328, 375, 775, 885, 955
Mox20I	TGGCCA	2 cut(s)	309, 654
Mph1103I	ATGCAT	1 cut(s)	79
MroXI	GAANNNNTTC	2 cut(s)	8, 676
MscI	TGGCCA	2 cut(s)	309, 654
MseI	TTAA	4 cut(s)	468, 489, 624, 930
MslI	CAYNNNNRTG	1 cut(s)	809
Msp20I	TGGCCA	2 cut(s)	309, 654
MspI	CCGG	2 cut(s)	503, 582
MspR9I	CCNGG	5 cut(s)	197, 503, 651, 774, 898
MvaI	CCWGG	4 cut(s)	197, 651, 774, 898
MwoI	GCNNNNNNNGC	2 cut(s)	371, 651
NciI	CCSGG	1 cut(s)	503
NcoI	CCATGG	1 cut(s)	655
NdeII	GATC	3 cut(s)	192, 252, 841
NlaIII	CATG	2 cut(s)	81, 659
NlaIV	GGNNCC	4 cut(s)	177, 202, 316, 887
NsiI	ATGCAT	1 cut(s)	79
NspV	TTCGAA	1 cut(s)	904
PcsI	WCGNNNNNNNCGW	1 cut(s)	633
PdmI	GAANNNNTTC	2 cut(s)	8, 676
PfeI	GAWTC	6 cut(s)	82, 528, 566, 611, 747, 906
PkrI	GCNGC	1 cut(s)	719
PleI	GAGTC	1 cut(s)	768
PpsI	GAGTC	1 cut(s)	768
Psp1406I	AACGTT	2 cut(s)	627, 636
Psp6I	CCWGG	4 cut(s)	195, 649, 772, 896
PspGI	CCWGG	4 cut(s)	195, 649, 772, 896
PspN4I	GGNNCC	4 cut(s)	177, 202, 316, 887
PspPI	GGNCC	3 cut(s)	176, 327, 647
PstNI	CAGNNNCTG	1 cut(s)	779
PsuI	RGATCY	1 cut(s)	192
RsaI	GTAC	4 cut(s)	202, 224, 230, 730
RsaNI	GTAC	4 cut(s)	201, 223, 229, 729
RseI	CAYNNNNRTG	1 cut(s)	809
SaqAI	TTAA	4 cut(s)	468, 489, 624, 930
SatI	GCNGC	1 cut(s)	718
Sau3AI	GATC	3 cut(s)	192, 252, 841
Sau96I	GGNCC	3 cut(s)	176, 327, 647
ScaI	AGTACT	1 cut(s)	230
SchI	GAGTC	1 cut(s)	769
ScrFI	CCNGG	5 cut(s)	197, 503, 651, 774, 898
SduI	GDGCHC	1 cut(s)	502
SfaNI	GCATC	2 cut(s)	64, 558
SfuI	TTCGAA	1 cut(s)	904
SinI	GGWCC	1 cut(s)	176
SmiMI	CAYNNNNRTG	1 cut(s)	809
Sse9I	AATT	3 cut(s)	282, 660, 712
SsiI	CCGC	2 cut(s)	645, 911
SspI	AATATT	1 cut(s)	851
SspMI	CTAG	1 cut(s)	858
StyD4I	CCNGG	5 cut(s)	195, 501, 649, 772, 896
StyI	CCWWGG	2 cut(s)	310, 655
TaaI	ACNGT	3 cut(s)	341, 357, 781
TaiI	ACGT	4 cut(s)	302, 630, 639, 708
TaqI	TCGA	2 cut(s)	303, 904
TaqII	GACCGA	1 cut(s)	193
TasI	AATT	3 cut(s)	282, 660, 712
TatI	WGTACW	1 cut(s)	228
TfiI	GAWTC	6 cut(s)	82, 528, 566, 611, 747, 906
Tru1I	TTAA	4 cut(s)	468, 489, 624, 930
Tru9I	TTAA	4 cut(s)	468, 489, 624, 930
TscAI	CASTG	3 cut(s)	362, 372, 647
TseI	GCWGC	1 cut(s)	717
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	3 cut(s)	362, 372, 647
VpaK11BI	GGWCC	1 cut(s)	176
XcmI	CCANNNNNNNNNTGG	2 cut(s)	233, 944
XmnI	GAANNNNTTC	2 cut(s)	8, 676
XspI	CTAG	1 cut(s)	858
ZrmI	AGTACT	1 cut(s)	230
Zsp2I	ATGCAT	1 cut(s)	79

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.