Rmu_sc0001464.1_g000018

Exopolygalacturonase-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001464.1
Physical Location & Seq
Forward (+)
77359 .. 83256
5898 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001464.1_g000018.1.cds

Sequence Viewer

Length: 1377 bp
atggtctcgacctcggctatccaatgtgtttgcttagtgctattgcttgtaaccattaacaaagttcaagctcagtccaaagtttacaatgtactggaacacggggctgttgcagatggaaaatttgataacagcaaggtcttgagtgaagtatggaaccaaacctgtcatcaaaacactggaggtggtgttattttatttccacaagggacgttcatggtggcaccggtggttctacaagggcattgcaagggaccaatggagttgcaggtacagggaaccctacaagctcccgtggacgtccaatcttcggttggtgtggaccattggatcagcttcagatatgttgaacacttcgtaattcgtggtggtggattgttggacggccaaggagcctctgcttggggaaagagcaaggcacttcccactgcccgatcacaggcggaagtccgcatgatcgctaaagtgcggacgttgacgctgcagcagcttccaagcagtaatggcggtgcggcgcttgtcggacagaagccggacacatcccagactgcttctggggtttcaagtgagctcgccatgcacactttcgattccgatcagccgagccttcgtgtttataatgacgccgtccgggacatccagaggacattgaggttagattttgtttctcatgcaagcatccgccaaataacatttctcaacagcaagaacacccacatcaaaattttcacatgcagtgttgtagtaattagcaacatcaacatatcggctcccggcgacagtcccaacactgacggaatcaaagtaagtaattccaaatacatccaaatcttggattcagtgatatccgtaggggacgactgcatagcctgccttcccaattcaaagaacgtcaacataactagagttcactgtggacctggacatggatttagcatcggaagcatttctcgtggtgctgttactagtttgaacataagaaacagcagtttagttggtactcagaatggagtgagaatcaagacaaaggcttatccatctcagccaggcaacgttgcatatattacatttgagcacattgaaatggataatgtcggcaaccccatcatcattgatcaaaactattgccctgatcacggatgtagcgggaaggaatcctcacaagttcagattaaaaatgttaagtttaataacatttggggaacttcaagaacaaagactgcagttaatttcaactgcagccaaagtaaaccttgccatgagattgagctgagagacatcgacctaaactatagagacggaggacctgcgaattcgtcatgttcatatgtggatggcaaagcttatggcaaacaaaaccctccttcttgcttataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

458

Amino Acids

49.32

Weight (kDa)

8.58

Isoelectric Point (pI)

41.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 618, 1375
AatII GACGTC 1 cut(s) 303
Acc36I ACCTGC 2 cut(s) 259, 1315
AccB1I GGYRCC 1 cut(s) 223
AccB7I CCANNNNNTGG 1 cut(s) 832
AciI CCGC 7 cut(s) 443, 451, 469, 507, 512, 682, 1146
AclI AACGTT 1 cut(s) 1053
AclWI GGATC 1 cut(s) 338
AcoI YGGCCR 1 cut(s) 385
AcsI RAATTY 3 cut(s) 122, 723, 1312
AcuI CTGAAG 1 cut(s) 322
AcyI GRCGYC 2 cut(s) 300, 624
AfaI GTAC 3 cut(s) 93, 273, 1000
AfiI CCNNNNNNNGG 6 cut(s) 310, 402, 439, 832, 926, 1136
AgeI ACCGGT 1 cut(s) 226
AgsI TTSAA 8 cut(s) 68, 350, 564, 885, 973, 1082, 1209, 1234
AhlI ACTAGT 1 cut(s) 965
AjnI CCWGG 2 cut(s) 919, 1045
AjuI GAANNNNNNNTTGG 2 cut(s) 678, 710
AluBI AGCT 7 cut(s) 71, 290, 336, 490, 571, 1270, 1343
AluI AGCT 7 cut(s) 71, 290, 336, 490, 571, 1270, 1343
Alw21I GWGCWC 2 cut(s) 573, 1077
Alw26I GTCTC 3 cut(s) 10, 1269, 1290
AlwI GGATC 1 cut(s) 338
AoxI GGCC 1 cut(s) 385
ApeKI GCWGC 4 cut(s) 481, 484, 487, 1239
ApoI RAATTY 3 cut(s) 122, 723, 1312
AsiGI ACCGGT 1 cut(s) 226
Asp700I GAANNNNTTC 1 cut(s) 946
AspLEI GCGC 1 cut(s) 517
AspS9I GGNCC 4 cut(s) 254, 322, 917, 1304
AsuC2I CCSGG 2 cut(s) 632, 774
AvaII GGWCC 4 cut(s) 254, 322, 917, 1304
BanI GGYRCC 1 cut(s) 223
BanII GRGCYC 1 cut(s) 573
BauI CACGAG 1 cut(s) 951
Bbv12I GWGCWC 2 cut(s) 573, 1077
BbvI GCAGC 4 cut(s) 468, 496, 499, 1251
BccI CCATC 4 cut(s) 110, 1045, 1112, 1328
BceAI ACGGC 2 cut(s) 400, 611
BciT130I CCWGG 2 cut(s) 921, 1047
BclI TGATCA 2 cut(s) 1114, 1132
BcnI CCSGG 2 cut(s) 632, 774
BcoDI GTCTC 3 cut(s) 10, 1269, 1290
BcuI ACTAGT 1 cut(s) 965
BfaI CTAG 2 cut(s) 903, 966
BfmI CTRYAG 4 cut(s) 482, 1221, 1237, 1291
BfoI RGCGCY 1 cut(s) 518
BfuAI ACCTGC 2 cut(s) 259, 1315
BisI GCNGC 5 cut(s) 482, 485, 488, 513, 1240
BlsI GCNGC 5 cut(s) 483, 486, 489, 514, 1241
Bme1390I CCNGG 4 cut(s) 632, 774, 921, 1047
Bme18I GGWCC 4 cut(s) 254, 322, 917, 1304
BmgT120I GGNCC 4 cut(s) 254, 322, 917, 1304
BmiI GGNNCC 6 cut(s) 158, 225, 255, 280, 394, 771
BmrFI CCNGG 4 cut(s) 632, 774, 921, 1047
BmsI GCATC 2 cut(s) 687, 945
BpmI CTGGAG 1 cut(s) 201
BpuEI CTTGAG 1 cut(s) 163
BpuMI CCSGG 2 cut(s) 632, 774
BsaBI GATNNNNATC 1 cut(s) 594
BsaHI GRCGYC 2 cut(s) 300, 624
BsaI GGTCTC 1 cut(s) 10
BsaJI CCNNGG 3 cut(s) 12, 294, 388
BsaWI WCCGGW 1 cut(s) 226
BsaXI ACNNNNNCTCC 2 cut(s) 174, 204
Bsc4I CCNNNNNNNGG 6 cut(s) 310, 402, 439, 832, 926, 1136
Bse118I RCCGGY 1 cut(s) 226
Bse1I ACTGG 2 cut(s) 99, 184
Bse3DI GCAATG 1 cut(s) 244
Bse8I GATNNNNATC 1 cut(s) 594
BseBI CCWGG 2 cut(s) 921, 1047
BseDI CCNNGG 3 cut(s) 12, 294, 388
BseGI GGATG 6 cut(s) 539, 636, 678, 822, 1145, 1339
BseJI GATNNNNATC 1 cut(s) 594
BseLI CCNNNNNNNGG 6 cut(s) 310, 402, 439, 832, 926, 1136
BseMI GCAATG 1 cut(s) 244
BseMII CTCAG 4 cut(s) 86, 1016, 1055, 1262
BseNI ACTGG 2 cut(s) 99, 184
BseXI GCAGC 4 cut(s) 468, 496, 499, 1251
BshFI GGCC 1 cut(s) 387
BshNI GGYRCC 1 cut(s) 223
BshTI ACCGGT 1 cut(s) 226
BsiHKAI GWGCWC 2 cut(s) 573, 1077
BsiSI CCGG 4 cut(s) 227, 533, 631, 774
BslFI GGGAC 5 cut(s) 223, 267, 647, 768, 869
BslI CCNNNNNNNGG 6 cut(s) 310, 402, 439, 832, 926, 1136
BsmAI GTCTC 3 cut(s) 10, 1269, 1290
BsmBI CGTCTC 1 cut(s) 1290
BsmFI GGGAC 5 cut(s) 223, 267, 647, 768, 869
BsnI GGCC 1 cut(s) 387
Bso31I GGTCTC 1 cut(s) 10
Bsp1286I GDGCHC 2 cut(s) 573, 1077
Bsp143I GATC 6 cut(s) 330, 434, 456, 595, 1114, 1132
BspACI CCGC 7 cut(s) 443, 451, 469, 507, 512, 682, 1146
BspANI GGCC 1 cut(s) 387
BspCNI CTCAG 4 cut(s) 85, 1015, 1054, 1263
BspLI GGNNCC 6 cut(s) 158, 225, 255, 280, 394, 771
BspMAI CTGCAG 3 cut(s) 486, 1225, 1241
BspMI ACCTGC 2 cut(s) 259, 1315
BspPI GGATC 1 cut(s) 338
BspT107I GGYRCC 1 cut(s) 223
BspTNI GGTCTC 1 cut(s) 10
BsrDI GCAATG 1 cut(s) 244
BsrFI RCCGGY 1 cut(s) 226
BsrI ACTGG 2 cut(s) 99, 184
BssAI RCCGGY 1 cut(s) 226
BssECI CCNNGG 3 cut(s) 12, 294, 388
BssMI GATC 6 cut(s) 330, 434, 456, 595, 1114, 1132
BssNI GRCGYC 2 cut(s) 300, 624
BssSI CACGAG 1 cut(s) 951
BssT1I CCWWGG 1 cut(s) 388
Bst2BI CACGAG 1 cut(s) 951
Bst2UI CCWGG 2 cut(s) 921, 1047
Bst4CI ACNGT 2 cut(s) 782, 914
BstACI GRCGYC 2 cut(s) 300, 624
BstAPI GCANNNNNTGC 1 cut(s) 870
BstC8I GCNNGC 3 cut(s) 573, 676, 871
BstDEI CTNAG 5 cut(s) 34, 72, 1002, 1041, 1271
BstDSI CCRYGG 1 cut(s) 294
BstF5I GGATG 6 cut(s) 539, 636, 678, 822, 1145, 1339
BstH2I RGCGCY 1 cut(s) 518
BstHHI GCGC 1 cut(s) 517
BstKTI GATC 6 cut(s) 333, 437, 459, 598, 1117, 1135
BstMAI GTCTC 3 cut(s) 10, 1269, 1290
BstMBI GATC 6 cut(s) 330, 434, 456, 595, 1114, 1132
BstMWI GCNNNNNNNGC 5 cut(s) 487, 504, 577, 870, 942
BstNI CCWGG 2 cut(s) 921, 1047
BstNSI RCATGY 1 cut(s) 735
BstSCI CCNGG 4 cut(s) 630, 772, 919, 1045
BstSFI CTRYAG 4 cut(s) 482, 1221, 1237, 1291
BstV1I GCAGC 4 cut(s) 468, 496, 499, 1251
BsuRI GGCC 1 cut(s) 387
BtgI CCRYGG 1 cut(s) 294
BtsCI GGATG 6 cut(s) 539, 636, 678, 822, 1145, 1339
BtsI GCAGTG 2 cut(s) 426, 742
BtsIMutI CAGTG 6 cut(s) 177, 426, 742, 789, 846, 910
BveI ACCTGC 2 cut(s) 259, 1315
Cac8I GCNNGC 3 cut(s) 573, 676, 871
CfoI GCGC 1 cut(s) 517
Cfr10I RCCGGY 1 cut(s) 226
Cfr13I GGNCC 4 cut(s) 254, 322, 917, 1304
CseI GACGC 2 cut(s) 487, 632
Csp6I GTAC 3 cut(s) 92, 272, 999
CspAI ACCGGT 1 cut(s) 226
CviAII CATG 8 cut(s) 217, 454, 577, 671, 732, 926, 1259, 1320
CviQI GTAC 3 cut(s) 92, 272, 999
DdeI CTNAG 5 cut(s) 34, 72, 1002, 1041, 1271
DpnI GATC 6 cut(s) 332, 436, 458, 597, 1116, 1134
DpnII GATC 6 cut(s) 330, 434, 456, 595, 1114, 1132
EaeI YGGCCR 1 cut(s) 385
EciI GGCGGA 2 cut(s) 458, 671
Ecl136II GAGCTC 1 cut(s) 571
Eco130I CCWWGG 1 cut(s) 388
Eco24I GRGCYC 1 cut(s) 573
Eco31I GGTCTC 1 cut(s) 10
Eco32I GATATC 1 cut(s) 846
Eco47I GGWCC 4 cut(s) 254, 322, 917, 1304
Eco53kI GAGCTC 1 cut(s) 571
Eco57I CTGAAG 1 cut(s) 322
EcoICRI GAGCTC 1 cut(s) 571
EcoO109I RGGNCCY 1 cut(s) 1304
EcoRI GAATTC 1 cut(s) 1312
EcoRII CCWGG 2 cut(s) 919, 1045
EcoRV GATATC 1 cut(s) 846
EcoT14I CCWWGG 1 cut(s) 388
EcoT38I GRGCYC 1 cut(s) 573
ErhI CCWWGG 1 cut(s) 388
Esp3I CGTCTC 1 cut(s) 1290
FaeI CATG 8 cut(s) 220, 457, 580, 674, 735, 929, 1262, 1323
FalI AAGNNNNNCTT 2 cut(s) 1237, 1269
FaqI GGGAC 5 cut(s) 223, 267, 647, 768, 869
FatI CATG 8 cut(s) 216, 453, 576, 670, 731, 925, 1258, 1319
FauI CCCGC 1 cut(s) 1139
FauNDI CATATG 1 cut(s) 1327
FbaI TGATCA 2 cut(s) 1114, 1132
Fnu4HI GCNGC 5 cut(s) 482, 485, 488, 513, 1240
FokI GGATG 6 cut(s) 526, 623, 665, 809, 1152, 1346
FriOI GRGCYC 1 cut(s) 573
Fsp4HI GCNGC 5 cut(s) 482, 485, 488, 513, 1240
FspBI CTAG 2 cut(s) 903, 966
GlaI GCGC 1 cut(s) 516
GluI GCNGC 5 cut(s) 482, 485, 488, 513, 1240
GsuI CTGGAG 1 cut(s) 201
HaeII RGCGCY 1 cut(s) 518
HaeIII GGCC 1 cut(s) 387
HapII CCGG 4 cut(s) 227, 533, 631, 774
HgaI GACGC 2 cut(s) 487, 632
HhaI GCGC 1 cut(s) 517
Hin1I GRCGYC 2 cut(s) 300, 624
Hin1II CATG 8 cut(s) 220, 457, 580, 674, 735, 929, 1262, 1323
Hin6I GCGC 1 cut(s) 515
HinP1I GCGC 1 cut(s) 515
HincII GTYRAC 2 cut(s) 477, 895
HindII GTYRAC 2 cut(s) 477, 895
HindIII AAGCTT 1 cut(s) 1341
HinfI GANTC 5 cut(s) 590, 798, 836, 1017, 1154
HpaII CCGG 4 cut(s) 227, 533, 631, 774
Hpy166II GTNNAC 8 cut(s) 85, 298, 322, 477, 895, 910, 917, 1250
Hpy188I TCNGA 6 cut(s) 341, 524, 595, 941, 1005, 1170
Hpy188III TCNNGA 5 cut(s) 7, 142, 640, 1021, 1209
Hpy8I GTNNAC 8 cut(s) 85, 298, 322, 477, 895, 910, 917, 1250
HpyAV CCTTC 4 cut(s) 617, 884, 1144, 1374
HpyCH4III ACNGT 2 cut(s) 782, 914
HpyCH4IV ACGT 5 cut(s) 212, 300, 473, 891, 1053
HpyF10VI GCNNNNNNNGC 5 cut(s) 487, 504, 577, 870, 942
HpyF3I CTNAG 5 cut(s) 34, 72, 1002, 1041, 1271
HpySE526I ACGT 5 cut(s) 212, 300, 473, 891, 1053
Hsp92I GRCGYC 2 cut(s) 300, 624
Hsp92II CATG 8 cut(s) 220, 457, 580, 674, 735, 929, 1262, 1323
HspAI GCGC 1 cut(s) 515
Ksp22I TGATCA 2 cut(s) 1114, 1132
Kzo9I GATC 6 cut(s) 330, 434, 456, 595, 1114, 1132
LmnI GCTCC 3 cut(s) 295, 392, 775
Lsp1109I GCAGC 4 cut(s) 468, 496, 499, 1251
LweI GCATC 2 cut(s) 687, 945
MaeI CTAG 2 cut(s) 903, 966
MaeII ACGT 5 cut(s) 212, 300, 473, 891, 1053
MaeIII GTNAC 2 cut(s) 49, 961
MalI GATC 6 cut(s) 332, 436, 458, 597, 1116, 1134
MboI GATC 6 cut(s) 330, 434, 456, 595, 1114, 1132
MboII GAAGA 1 cut(s) 300
MhlI GDGCHC 2 cut(s) 573, 1077
MluCI AATT 8 cut(s) 122, 360, 723, 747, 811, 880, 1228, 1312
MmeI TCCRAC 2 cut(s) 360, 502
MnlI CCTC 8 cut(s) 22, 176, 406, 636, 645, 1168, 1295, 1371
MroXI GAANNNNTTC 1 cut(s) 946
MseI TTAA 5 cut(s) 57, 1173, 1182, 1188, 1227
MslI CAYNNNNRTG 1 cut(s) 1082
MspI CCGG 4 cut(s) 227, 533, 631, 774
MspR9I CCNGG 4 cut(s) 632, 774, 921, 1047
MvaI CCWGG 2 cut(s) 921, 1047
MwoI GCNNNNNNNGC 5 cut(s) 487, 504, 577, 870, 942
NciI CCSGG 2 cut(s) 632, 774
NdeI CATATG 1 cut(s) 1327
NdeII GATC 6 cut(s) 330, 434, 456, 595, 1114, 1132
NlaIII CATG 8 cut(s) 220, 457, 580, 674, 735, 929, 1262, 1323
NlaIV GGNNCC 6 cut(s) 158, 225, 255, 280, 394, 771
NmeAIII GCCGAG 1 cut(s) 627
NspI RCATGY 1 cut(s) 735
PdmI GAANNNNTTC 1 cut(s) 946
PfeI GAWTC 5 cut(s) 590, 798, 836, 1017, 1154
PflFI GACNNNGTC 1 cut(s) 626
PflMI CCANNNNNTGG 1 cut(s) 832
PfoI TCCNGGA 1 cut(s) 630
PinAI ACCGGT 1 cut(s) 226
PkrI GCNGC 5 cut(s) 483, 486, 489, 514, 1241
PpuMI RGGWCCY 1 cut(s) 1304
PsiI TTATAA 2 cut(s) 618, 1375
Psp124BI GAGCTC 1 cut(s) 573
Psp1406I AACGTT 1 cut(s) 1053
Psp5II RGGWCCY 1 cut(s) 1304
Psp6I CCWGG 2 cut(s) 919, 1045
PspGI CCWGG 2 cut(s) 919, 1045
PspN4I GGNNCC 6 cut(s) 158, 225, 255, 280, 394, 771
PspPI GGNCC 4 cut(s) 254, 322, 917, 1304
PspPPI RGGWCCY 1 cut(s) 1304
PstI CTGCAG 3 cut(s) 486, 1225, 1241
PsyI GACNNNGTC 1 cut(s) 626
RsaI GTAC 3 cut(s) 93, 273, 1000
RsaNI GTAC 3 cut(s) 92, 272, 999
RseI CAYNNNNRTG 1 cut(s) 1082
SacI GAGCTC 1 cut(s) 573
SaqAI TTAA 5 cut(s) 57, 1173, 1182, 1188, 1227
SatI GCNGC 5 cut(s) 482, 485, 488, 513, 1240
Sau3AI GATC 6 cut(s) 330, 434, 456, 595, 1114, 1132
Sau96I GGNCC 4 cut(s) 254, 322, 917, 1304
ScrFI CCNGG 4 cut(s) 632, 774, 921, 1047
SduI GDGCHC 2 cut(s) 573, 1077
SfaNI GCATC 2 cut(s) 687, 945
SfcI CTRYAG 4 cut(s) 482, 1221, 1237, 1291
SgrAI CRCCGGYG 1 cut(s) 226
SinI GGWCC 4 cut(s) 254, 322, 917, 1304
SmiMI CAYNNNNRTG 1 cut(s) 1082
SmlI CTYRAG 1 cut(s) 142
SmoI CTYRAG 1 cut(s) 142
SpeI ACTAGT 1 cut(s) 965
Sse9I AATT 8 cut(s) 122, 360, 723, 747, 811, 880, 1228, 1312
SsiI CCGC 7 cut(s) 443, 451, 469, 507, 512, 682, 1146
SspMI CTAG 2 cut(s) 903, 966
SstI GAGCTC 1 cut(s) 573
StyD4I CCNGG 4 cut(s) 630, 772, 919, 1045
StyI CCWWGG 1 cut(s) 388
TaaI ACNGT 2 cut(s) 782, 914
TaiI ACGT 5 cut(s) 215, 303, 476, 894, 1056
TaqI TCGA 3 cut(s) 8, 588, 1281
TasI AATT 8 cut(s) 122, 360, 723, 747, 811, 880, 1228, 1312
TatI WGTACW 1 cut(s) 91
TauI GCSGC 1 cut(s) 515
TfiI GAWTC 5 cut(s) 590, 798, 836, 1017, 1154
Tru1I TTAA 5 cut(s) 57, 1173, 1182, 1188, 1227
Tru9I TTAA 5 cut(s) 57, 1173, 1182, 1188, 1227
TscAI CASTG 6 cut(s) 184, 433, 742, 796, 846, 917
TseI GCWGC 4 cut(s) 481, 484, 487, 1239
TspDTI ATGAA 2 cut(s) 205, 1314
TspGWI ACGGA 4 cut(s) 810, 838, 1152, 1314
TspRI CASTG 6 cut(s) 184, 433, 742, 796, 846, 917
Tth111I GACNNNGTC 1 cut(s) 626
Van91I CCANNNNNTGG 1 cut(s) 832
VpaK11BI GGWCC 4 cut(s) 254, 322, 917, 1304
XapI RAATTY 3 cut(s) 122, 723, 1312
XceI RCATGY 1 cut(s) 735
XcmI CCANNNNNNNNNTGG 2 cut(s) 311, 551
XmnI GAANNNNTTC 1 cut(s) 946
XspI CTAG 2 cut(s) 903, 966
ZraI GACGTC 1 cut(s) 301
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.