Rmu_sc0009443.1_g000011

Exopolygalacturonase-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009443.1
Physical Location & Seq
Reverse (-)
35040 .. 40243
5204 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009443.1_g000011.1.cds

Sequence Viewer

Length: 1152 bp
atgttcaagctccgacggcggcgtgcctcttaccggacggaggctaacagcatcccagaccagtttgcagtgaagacgaaggccaaagagatcgagattggagggatgtccagagggttcgtttggcgaccgcagcgcagccatcgccgccttctcgacgccagaagagggacgtccgcttttactgatgcatggaatcaagcttgccaaaacaatggaggtggtgtggtcttgtttcagcaagggatatatttggtgaaccctttggttgtagaaggctcttgcaagggaccgatggagttgcagatccagggtaccttattggcttcaagcgagtaccagtactcggttggtattgaccattggatcgtcttccaatacattgacaacttagtaattagtggtggagggacgttcgatggccaaggagcctcttcttggccctataacgactgtcgcaaaaacccacagtgcaaggcactgcctgcgtcattgaggttcaactttgccaataatacaaagatcgacaacataactctcatcaacagcaagaacaccaacatcctccttttcgcaggtcttaatgtgataatcagcaacattaacataagtgccccggccgacagccccaacaccgatggaatcaaagtcggtagttcaagcatcgtccaaatatatgattctgtaatatccaccggagatgactgcatagctttccttcctgaatcaaccaaccttaatgttactaacgttcactgcgggcctggccatggaattagtgtaggaagcatttccagtaactctattactggcttgaacgtaaggaattgcagcttcgtaggtactcagaatggtgttagaatcaagacgaagagtccctctcaaccaggaactgttgcacaagttacatttgaaaacattcaaatggataaggtcgataatcccatcatcattgatcaacaatattgcgctagtagtggctgtcgtccacagaattatagtactaaaccaccacatgtggttgagttggtaagagcctccaggtgtggaacccccacacccgggttcgaatcccgccgacggttattggagttaaatcccaatatagtcttggtggccagggggaggaagcgttctgacaagatcccctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

383

Amino Acids

41.84

Weight (kDa)

9.38

Isoelectric Point (pI)

44.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 176
Acc36I ACCTGC 1 cut(s) 566
Acc65I GGTACC 1 cut(s) 314
AccB1I GGYRCC 1 cut(s) 314
AciI CCGC 6 cut(s) 19, 131, 148, 177, 759, 1075
AclI AACGTT 1 cut(s) 750
AclWI GGATC 3 cut(s) 301, 374, 1138
AcoI YGGCCR 4 cut(s) 421, 618, 766, 1116
AcyI GRCGYC 2 cut(s) 159, 173
AfaI GTAC 5 cut(s) 316, 338, 344, 844, 1003
AflIII ACRYGT 1 cut(s) 1015
AgsI TTSAA 7 cut(s) 7, 330, 502, 660, 817, 914, 923
AhdI GACNNNNNGTC 1 cut(s) 873
AjnI CCWGG 5 cut(s) 309, 763, 886, 1040, 1118
AloI GAACNNNNNNTCC 2 cut(s) 1117, 1149
AluBI AGCT 4 cut(s) 10, 203, 713, 834
AluI AGCT 4 cut(s) 10, 203, 713, 834
AlwI GGATC 3 cut(s) 301, 374, 1138
AlwNI CAGNNNCTG 1 cut(s) 893
Ama87I CYCGRG 1 cut(s) 1061
AoxI GGCC 7 cut(s) 81, 421, 440, 618, 761, 766, 1116
ApeKI GCWGC 3 cut(s) 133, 138, 831
Asp700I GAANNNNTTC 2 cut(s) 790, 918
Asp718I GGTACC 1 cut(s) 314
AspLEI GCGC 2 cut(s) 138, 971
AspS9I GGNCC 3 cut(s) 290, 441, 761
AsuC2I CCSGG 3 cut(s) 617, 1062, 1063
AsuHPI GGTGA 1 cut(s) 268
AsuII TTCGAA 1 cut(s) 1068
AvaI CYCGRG 1 cut(s) 1061
AvaII GGWCC 1 cut(s) 290
BaeGI GKGCMC 1 cut(s) 616
BalI TGGCCA 3 cut(s) 423, 768, 1118
BanI GGYRCC 1 cut(s) 314
BbsI GAAGAC 2 cut(s) 80, 364
BbvI GCAGC 3 cut(s) 145, 150, 843
BccI CCATC 5 cut(s) 150, 289, 413, 632, 953
BceAI ACGGC 1 cut(s) 32
BcgI CGANNNNNNTGC 2 cut(s) 283, 317
BciT130I CCWGG 5 cut(s) 311, 765, 888, 1042, 1120
BclI TGATCA 1 cut(s) 955
BcnI CCSGG 3 cut(s) 617, 1062, 1063
BfaI CTAG 1 cut(s) 972
BfuAI ACCTGC 1 cut(s) 566
BisI GCNGC 5 cut(s) 20, 134, 139, 148, 832
BlsI GCNGC 5 cut(s) 21, 135, 140, 149, 833
BmcAI AGTACT 2 cut(s) 344, 1003
Bme1390I CCNGG 8 cut(s) 311, 617, 765, 888, 1042, 1062, 1063, 1120
Bme18I GGWCC 1 cut(s) 290
BmeRI GACNNNNNGTC 1 cut(s) 873
BmeT110I CYCGRG 1 cut(s) 1061
BmgT120I GGNCC 3 cut(s) 290, 441, 761
BmiI GGNNCC 4 cut(s) 291, 316, 430, 1051
BmrFI CCNGG 8 cut(s) 311, 617, 765, 888, 1042, 1062, 1063, 1120
BmsI GCATC 3 cut(s) 60, 178, 672
BpiI GAAGAC 2 cut(s) 80, 364
BplI GAGNNNNNCTC 2 cut(s) 865, 897
BpmI CTGGAG 1 cut(s) 1024
Bpu14I TTCGAA 1 cut(s) 1068
BpuMI CCSGG 3 cut(s) 617, 1062, 1063
BsaHI GRCGYC 2 cut(s) 159, 173
BsaJI CCNNGG 6 cut(s) 310, 424, 615, 769, 1061, 1119
BsaWI WCCGGW 2 cut(s) 33, 695
BsaXI ACNNNNNCTCC 4 cut(s) 210, 240, 1117, 1147
Bse1I ACTGG 4 cut(s) 61, 340, 795, 814
BseBI CCWGG 5 cut(s) 311, 765, 888, 1042, 1120
BseDI CCNNGG 6 cut(s) 310, 424, 615, 769, 1061, 1119
BseGI GGATG 3 cut(s) 51, 111, 561
BseMII CTCAG 1 cut(s) 860
BseNI ACTGG 4 cut(s) 61, 340, 795, 814
BseSI GKGCMC 1 cut(s) 616
BseX3I CGGCCG 1 cut(s) 618
BseXI GCAGC 3 cut(s) 145, 150, 843
Bsh1285I CGRYCG 2 cut(s) 131, 621
BshFI GGCC 7 cut(s) 83, 423, 442, 620, 763, 768, 1118
BshNI GGYRCC 1 cut(s) 314
BsiEI CGRYCG 2 cut(s) 131, 621
BsiHKCI CYCGRG 1 cut(s) 1061
BsiSI CCGG 4 cut(s) 34, 617, 696, 1062
BslFI GGGAC 4 cut(s) 184, 303, 424, 861
BsmFI GGGAC 4 cut(s) 184, 303, 424, 861
BsnI GGCC 7 cut(s) 83, 423, 442, 620, 763, 768, 1118
BsoBI CYCGRG 1 cut(s) 1061
Bsp119I TTCGAA 1 cut(s) 1068
Bsp1286I GDGCHC 1 cut(s) 616
Bsp143I GATC 6 cut(s) 90, 306, 366, 522, 955, 1143
Bsp19I CCATGG 1 cut(s) 769
BspACI CCGC 6 cut(s) 19, 131, 148, 177, 759, 1075
BspANI GGCC 7 cut(s) 83, 423, 442, 620, 763, 768, 1118
BspCNI CTCAG 1 cut(s) 859
BspLI GGNNCC 4 cut(s) 291, 316, 430, 1051
BspMI ACCTGC 1 cut(s) 566
BspPI GGATC 3 cut(s) 301, 374, 1138
BspT104I TTCGAA 1 cut(s) 1068
BspT107I GGYRCC 1 cut(s) 314
BsrI ACTGG 4 cut(s) 61, 340, 795, 814
BssECI CCNNGG 6 cut(s) 310, 424, 615, 769, 1061, 1119
BssMI GATC 6 cut(s) 90, 306, 366, 522, 955, 1143
BssNI GRCGYC 2 cut(s) 159, 173
BssT1I CCWWGG 2 cut(s) 424, 769
Bst2UI CCWGG 5 cut(s) 311, 765, 888, 1042, 1120
Bst4CI ACNGT 4 cut(s) 455, 471, 895, 1083
Bst6I CTCTTC 3 cut(s) 160, 439, 866
BstACI GRCGYC 2 cut(s) 159, 173
BstAPI GCANNNNNTGC 1 cut(s) 485
BstBI TTCGAA 1 cut(s) 1068
BstC8I GCNNGC 4 cut(s) 24, 205, 486, 761
BstDEI CTNAG 2 cut(s) 391, 846
BstDSI CCRYGG 1 cut(s) 769
BstF5I GGATG 3 cut(s) 51, 111, 561
BstHHI GCGC 2 cut(s) 138, 971
BstKTI GATC 6 cut(s) 93, 309, 369, 525, 958, 1146
BstMBI GATC 6 cut(s) 90, 306, 366, 522, 955, 1143
BstMCI CGRYCG 2 cut(s) 131, 621
BstMWI GCNNNNNNNGC 6 cut(s) 16, 133, 144, 147, 485, 765
BstNI CCWGG 5 cut(s) 311, 765, 888, 1042, 1120
BstNSI RCATGY 1 cut(s) 1019
BstSCI CCNGG 8 cut(s) 309, 615, 763, 886, 1040, 1060, 1061, 1118
BstSLI GKGCMC 1 cut(s) 616
BstV1I GCAGC 3 cut(s) 145, 150, 843
BstV2I GAAGAC 2 cut(s) 80, 364
BstX2I RGATCY 2 cut(s) 306, 1143
BstXI CCANNNNNNTGG 1 cut(s) 215
BstYI RGATCY 2 cut(s) 306, 1143
BstZI CGGCCG 1 cut(s) 618
BsuRI GGCC 7 cut(s) 83, 423, 442, 620, 763, 768, 1118
BtgI CCRYGG 1 cut(s) 769
BtgZI GCGATG 1 cut(s) 128
BtsCI GGATG 3 cut(s) 51, 111, 561
BtsI GCAGTG 3 cut(s) 75, 479, 754
BtsIMutI CAGTG 4 cut(s) 75, 476, 479, 754
BveI ACCTGC 1 cut(s) 566
Cac8I GCNNGC 4 cut(s) 24, 205, 486, 761
CaiI CAGNNNCTG 1 cut(s) 893
CfoI GCGC 2 cut(s) 138, 971
Cfr13I GGNCC 3 cut(s) 290, 441, 761
Cfr9I CCCGGG 1 cut(s) 1061
CseI GACGC 2 cut(s) 167, 477
Csp6I GTAC 5 cut(s) 315, 337, 343, 843, 1002
CspCI CAANNNNNGTGG 2 cut(s) 202, 237
CviAII CATG 3 cut(s) 192, 770, 1016
CviQI GTAC 5 cut(s) 315, 337, 343, 843, 1002
DdeI CTNAG 2 cut(s) 391, 846
DpnI GATC 6 cut(s) 92, 308, 368, 524, 957, 1145
DpnII GATC 6 cut(s) 90, 306, 366, 522, 955, 1143
DriI GACNNNNNGTC 1 cut(s) 873
EaeI YGGCCR 4 cut(s) 421, 618, 766, 1116
EagI CGGCCG 1 cut(s) 618
Eam1104I CTCTTC 3 cut(s) 160, 439, 866
Eam1105I GACNNNNNGTC 1 cut(s) 873
EarI CTCTTC 3 cut(s) 160, 439, 866
EclXI CGGCCG 1 cut(s) 618
Eco130I CCWWGG 2 cut(s) 424, 769
Eco47I GGWCC 1 cut(s) 290
Eco52I CGGCCG 1 cut(s) 618
Eco88I CYCGRG 1 cut(s) 1061
EcoRII CCWGG 5 cut(s) 309, 763, 886, 1040, 1118
EcoT14I CCWWGG 2 cut(s) 424, 769
EcoT22I ATGCAT 1 cut(s) 193
ErhI CCWWGG 2 cut(s) 424, 769
FaeI CATG 3 cut(s) 195, 773, 1019
FaqI GGGAC 4 cut(s) 184, 303, 424, 861
FatI CATG 3 cut(s) 191, 769, 1015
FauI CCCGC 2 cut(s) 752, 1082
FbaI TGATCA 1 cut(s) 955
Fnu4HI GCNGC 5 cut(s) 20, 134, 139, 148, 832
FokI GGATG 3 cut(s) 38, 118, 548
Fsp4HI GCNGC 5 cut(s) 20, 134, 139, 148, 832
FspBI CTAG 1 cut(s) 972
GlaI GCGC 2 cut(s) 137, 970
GluI GCNGC 5 cut(s) 20, 134, 139, 148, 832
GsuI CTGGAG 1 cut(s) 1024
HaeIII GGCC 7 cut(s) 83, 423, 442, 620, 763, 768, 1118
HapII CCGG 4 cut(s) 34, 617, 696, 1062
HgaI GACGC 2 cut(s) 167, 477
HhaI GCGC 2 cut(s) 138, 971
Hin1I GRCGYC 2 cut(s) 159, 173
Hin1II CATG 3 cut(s) 195, 773, 1019
Hin6I GCGC 2 cut(s) 136, 969
HinP1I GCGC 2 cut(s) 136, 969
HindIII AAGCTT 1 cut(s) 201
HinfI GANTC 7 cut(s) 196, 642, 680, 725, 861, 874, 1070
HpaII CCGG 4 cut(s) 34, 617, 696, 1062
HphI GGTGA 1 cut(s) 268
Hpy166II GTNNAC 3 cut(s) 259, 754, 989
Hpy188I TCNGA 3 cut(s) 14, 849, 1138
Hpy188III TCNNGA 5 cut(s) 94, 111, 155, 722, 865
Hpy8I GTNNAC 3 cut(s) 259, 754, 989
Hpy99I CGWCG 3 cut(s) 18, 161, 1083
HpyAV CCTTC 4 cut(s) 73, 161, 269, 728
HpyCH4III ACNGT 4 cut(s) 455, 471, 895, 1083
HpyCH4IV ACGT 4 cut(s) 173, 413, 750, 819
HpyCH4V TGCA 8 cut(s) 68, 191, 285, 304, 474, 708, 831, 899
HpyF10VI GCNNNNNNNGC 6 cut(s) 16, 133, 144, 147, 485, 765
HpyF3I CTNAG 2 cut(s) 391, 846
HpySE526I ACGT 4 cut(s) 173, 413, 750, 819
Hsp92I GRCGYC 2 cut(s) 159, 173
Hsp92II CATG 3 cut(s) 195, 773, 1019
HspAI GCGC 2 cut(s) 136, 969
KpnI GGTACC 1 cut(s) 318
Ksp22I TGATCA 1 cut(s) 955
Kzo9I GATC 6 cut(s) 90, 306, 366, 522, 955, 1143
LmnI GCTCC 2 cut(s) 15, 428
Lsp1109I GCAGC 3 cut(s) 145, 150, 843
LweI GCATC 3 cut(s) 60, 178, 672
MaeI CTAG 1 cut(s) 972
MaeII ACGT 4 cut(s) 173, 413, 750, 819
MaeIII GTNAC 3 cut(s) 742, 797, 904
MalI GATC 6 cut(s) 92, 308, 368, 524, 957, 1145
MboI GATC 6 cut(s) 90, 306, 366, 522, 955, 1143
MboII GAAGA 5 cut(s) 85, 177, 364, 426, 883
MflI RGATCY 2 cut(s) 306, 1143
MhlI GDGCHC 1 cut(s) 616
MlsI TGGCCA 3 cut(s) 423, 768, 1118
MluCI AATT 4 cut(s) 396, 774, 826, 994
MluNI TGGCCA 3 cut(s) 423, 768, 1118
MlyI GAGTC 1 cut(s) 883
MmeI TCCRAC 1 cut(s) 37
Mox20I TGGCCA 3 cut(s) 423, 768, 1118
Mph1103I ATGCAT 1 cut(s) 193
MroXI GAANNNNTTC 2 cut(s) 790, 918
MscI TGGCCA 3 cut(s) 423, 768, 1118
MseI TTAA 4 cut(s) 582, 603, 738, 1094
MslI CAYNNNNRTG 1 cut(s) 923
Msp20I TGGCCA 3 cut(s) 423, 768, 1118
MspI CCGG 4 cut(s) 34, 617, 696, 1062
MspR9I CCNGG 8 cut(s) 311, 617, 765, 888, 1042, 1062, 1063, 1120
MvaI CCWGG 5 cut(s) 311, 765, 888, 1042, 1120
MwoI GCNNNNNNNGC 6 cut(s) 16, 133, 144, 147, 485, 765
NciI CCSGG 3 cut(s) 617, 1062, 1063
NcoI CCATGG 1 cut(s) 769
NdeII GATC 6 cut(s) 90, 306, 366, 522, 955, 1143
NlaIII CATG 3 cut(s) 195, 773, 1019
NlaIV GGNNCC 4 cut(s) 291, 316, 430, 1051
NsiI ATGCAT 1 cut(s) 193
NspI RCATGY 1 cut(s) 1019
NspV TTCGAA 1 cut(s) 1068
PciI ACATGT 1 cut(s) 1015
PdmI GAANNNNTTC 2 cut(s) 790, 918
PfeI GAWTC 6 cut(s) 196, 642, 680, 725, 861, 1070
PkrI GCNGC 5 cut(s) 21, 135, 140, 149, 833
PleI GAGTC 1 cut(s) 882
PpsI GAGTC 1 cut(s) 882
PscI ACATGT 1 cut(s) 1015
Psp1406I AACGTT 1 cut(s) 750
Psp6I CCWGG 5 cut(s) 309, 763, 886, 1040, 1118
PspGI CCWGG 5 cut(s) 309, 763, 886, 1040, 1118
PspN4I GGNNCC 4 cut(s) 291, 316, 430, 1051
PspPI GGNCC 3 cut(s) 290, 441, 761
PstNI CAGNNNCTG 1 cut(s) 893
PsuI RGATCY 2 cut(s) 306, 1143
RsaI GTAC 5 cut(s) 316, 338, 344, 844, 1003
RsaNI GTAC 5 cut(s) 315, 337, 343, 843, 1002
RseI CAYNNNNRTG 1 cut(s) 923
SaqAI TTAA 4 cut(s) 582, 603, 738, 1094
SatI GCNGC 5 cut(s) 20, 134, 139, 148, 832
Sau3AI GATC 6 cut(s) 90, 306, 366, 522, 955, 1143
Sau96I GGNCC 3 cut(s) 290, 441, 761
ScaI AGTACT 2 cut(s) 344, 1003
SchI GAGTC 1 cut(s) 883
ScrFI CCNGG 8 cut(s) 311, 617, 765, 888, 1042, 1062, 1063, 1120
SduI GDGCHC 1 cut(s) 616
SfaNI GCATC 3 cut(s) 60, 178, 672
SfuI TTCGAA 1 cut(s) 1068
SinI GGWCC 1 cut(s) 290
SmaI CCCGGG 1 cut(s) 1063
SmiMI CAYNNNNRTG 1 cut(s) 923
Sse9I AATT 4 cut(s) 396, 774, 826, 994
SsiI CCGC 6 cut(s) 19, 131, 148, 177, 759, 1075
SspI AATATT 1 cut(s) 965
SspMI CTAG 1 cut(s) 972
StyD4I CCNGG 8 cut(s) 309, 615, 763, 886, 1040, 1060, 1061, 1118
StyI CCWWGG 2 cut(s) 424, 769
TaaI ACNGT 4 cut(s) 455, 471, 895, 1083
TaiI ACGT 4 cut(s) 176, 416, 753, 822
TaqI TCGA 6 cut(s) 93, 156, 417, 525, 936, 1068
TaqII GACCGA 1 cut(s) 307
TasI AATT 4 cut(s) 396, 774, 826, 994
TatI WGTACW 2 cut(s) 342, 1001
TauI GCSGC 2 cut(s) 22, 150
TfiI GAWTC 6 cut(s) 196, 642, 680, 725, 861, 1070
Tru1I TTAA 4 cut(s) 582, 603, 738, 1094
Tru9I TTAA 4 cut(s) 582, 603, 738, 1094
TscAI CASTG 4 cut(s) 75, 476, 486, 761
TseI GCWGC 3 cut(s) 133, 138, 831
TspGWI ACGGA 1 cut(s) 53
TspMI CCCGGG 1 cut(s) 1061
TspRI CASTG 4 cut(s) 75, 476, 486, 761
VpaK11BI GGWCC 1 cut(s) 290
XceI RCATGY 1 cut(s) 1019
XcmI CCANNNNNNNNNTGG 2 cut(s) 347, 1108
XmaI CCCGGG 1 cut(s) 1061
XmnI GAANNNNTTC 2 cut(s) 790, 918
XspI CTAG 1 cut(s) 972
ZraI GACGTC 1 cut(s) 174
ZrmI AGTACT 2 cut(s) 344, 1003
Zsp2I ATGCAT 1 cut(s) 193
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.