Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0002146

Physical Location & Seq

Genomic Coordinates Reverse (-)

29273105 .. 29274704

Gene Structure 1600 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g28770.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGAAGCCACAAAGAGTCTGCGCCGTTGCAGATGGAAAATTTGATAACAGCGAGGTCTTGAGTGAAGTATGGAATCAATCCTGTCATCAAAACACTGGAGGTGGTGTTATTTTATTTCCACAGGGGACGTTCATGGTGGCTCCGGTGATTTTACAAAGGCATTGCAAGGGACCGATGGAATTGCAGGTACAGGGAACCCTACAGGCTCCCGTCGATGTCCAATCTTCGGTTGGTGTGGATCATTGGATCACCTTCAGATATGTTGAGCACTTTGTAATTCATGGTGGTGGATTGTTGGACGGCCAAGGAGCCTCTGCTTGGGGCAAGAGCAAGGCACTTCCCACTGACATCCGTCACATAACATTTCTCAACAGCAAGAACACCCACATGAAAATTTTCACTTGCAATGCTGTGATAATTAGCAATATCAACATATCGGCTCCCGGTAACAGTCCCAACACTGATGGAATCAAAGTAAGTAATTCCAACAACACCCAAATCTCGGATTCAGTGATATCCGCAGGAGACGACTGCATATCCTTCCTTCCCAATTCAAACAACATCAACATTACTAGAGTTCACTATGGCCCTGGACATGGATTTAGCATCGGAAGCATTTCTAGTGGCACTGTTACTAATTTGAACATAAGAAACAGCAGCTTAGTTGGTACTCAAAATGGAGTGAGAATCAAGACAAAGGCTCATCCATCTCAGCCGGGCAATGTTGCATATATTACATTTGAGCACATTGAGATGGATAAGGTTGGCAATCCGATAGTCATTGATCAAAATTATTGCCCTGGTCACGGATGTAGCGAAAAGGAATCCTCGCAAGTTCAGATTAACAATGTTAACTTTAATAACATTTGGGGAACTTCAAGCACAAAGACAGCAGTTACTTTCAACTGCAGCCGAAGTAAACCTTGCTATGAGATACAGCTGAGAGACATCAACCTAAGCAAGGGCGGAGCTACCATGAGATGTGAAGGGGTCCCGACACCCCACCCCAGACATTTCTCTAACCCATGTAATTATGTTAAGCCATTAGAGAAGGGGTCACCTTCGGTGCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Glyco_hydro_28

Protein Analysis

358

Amino Acids

38.64

Weight (kDa)

8.61

Isoelectric Point (pI)

39.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pect-lyase_RHGA_epim	PF12708	8 - 219	1.3e-08	Rhamnogalacturonase A/epimerase, pectate lyase-like
Glyco_hydro_28	PF00295	37 - 334	6.7e-73	Glycosyl hydrolases family 28

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002146)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12491 FvH4_1g12500 FvH4_3g23740 FvH4_4g28770
malus_domestica	MD03G1196500.v1.1 MD11G1207000.v1.1
prunus_persica	Prupe.4G218900_v2.0.a1 Prupe.4G228600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0100401 RchiOBHm_Chr4g0436881 RchiOBHm_Chr5g0041901 RchiOBHm_Chr5g0041941
rosa_laevigata	RLG00000006489 RLG00000016970 RLG00000016994 RLG00000034104
rosa_multiflora	Rmu_sc0001095.1_g000011 Rmu_sc0001464.1_g000018 Rmu_sc0009443.1_g000011 Rmu_sc0010997.1_g000006
rosa_roxburghii	Rroxscaffold_2G00142280 Rroxscaffold_5G00377950
rosa_rugosa	Rorug02G0087800 Rorug04G0297000 Rorug05G0197100
rosa_samantha	Rh2AG137300 Rh2AG137500 Rh2BG140500 Rh2BG140700 Rh2CG142600 Rh2DG142500 Rh4AG351300 Rh4BG360300 Rh4CG374600 Rh4DG354600 Rh5AG281700 Rh5AG281900 Rh5BG287500 Rh5CG318800 Rh5DG296100 Rh5DG296400
rosa_wichuraiana	Rw0G001350 Rw2G010740 Rw4G030760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	175
AciI	CCGC	2 cut(s)	519, 966
AclWI	GGATC	2 cut(s)	246, 254
AcoI	YGGCCR	1 cut(s)	301
AcsI	RAATTY	2 cut(s)	38, 393
AcuI	CTGAAG	1 cut(s)	238
AfaI	GTAC	2 cut(s)	189, 670
AfiI	CCNNNNNNNGG	6 cut(s)	226, 318, 502, 596, 806, 961
AgsI	TTSAA	4 cut(s)	555, 643, 879, 904
AjnI	CCWGG	2 cut(s)	589, 799
AluBI	AGCT	3 cut(s)	660, 940, 971
AluI	AGCT	3 cut(s)	660, 940, 971
Alw21I	GWGCWC	2 cut(s)	270, 747
Alw26I	GTCTC	2 cut(s)	519, 939
AlwI	GGATC	2 cut(s)	246, 254
AoxI	GGCC	2 cut(s)	301, 586
ApeKI	GCWGC	2 cut(s)	657, 909
ApoI	RAATTY	2 cut(s)	38, 393
Asp700I	GAANNNNTTC	2 cut(s)	395, 616
AspLEI	GCGC	1 cut(s)	23
AspS9I	GGNCC	3 cut(s)	170, 587, 991
AsuC2I	CCSGG	2 cut(s)	444, 717
AsuHPI	GGTGA	3 cut(s)	157, 241, 1050
AvaII	GGWCC	2 cut(s)	170, 991
Bbv12I	GWGCWC	2 cut(s)	270, 747
BbvI	GCAGC	2 cut(s)	669, 921
BccI	CCATC	5 cut(s)	26, 169, 458, 715, 748
BceAI	ACGGC	2 cut(s)	8, 316
BcgI	CGANNNNNNTGC	2 cut(s)	163, 197
BciT130I	CCWGG	2 cut(s)	591, 801
BclI	TGATCA	1 cut(s)	784
BcnI	CCSGG	2 cut(s)	444, 717
BcoDI	GTCTC	2 cut(s)	519, 939
BfaI	CTAG	2 cut(s)	573, 621
BfmI	CTRYAG	2 cut(s)	200, 907
BfuAI	ACCTGC	1 cut(s)	175
BisI	GCNGC	2 cut(s)	658, 910
BlsI	GCNGC	2 cut(s)	659, 911
Bme1390I	CCNGG	4 cut(s)	444, 591, 717, 801
Bme18I	GGWCC	2 cut(s)	170, 991
BmgT120I	GGNCC	3 cut(s)	170, 587, 991
BmiI	GGNNCC	8 cut(s)	141, 171, 196, 207, 310, 441, 992, 993
BmrFI	CCNGG	4 cut(s)	444, 591, 717, 801
BmsI	GCATC	1 cut(s)	615
BoxI	GACNNNNGTC	1 cut(s)	351
BpmI	CTGGAG	1 cut(s)	117
Bpu10I	CCTNAGC	1 cut(s)	956
BpuEI	CTTGAG	1 cut(s)	79
BpuMI	CCSGG	2 cut(s)	444, 717
BsaJI	CCNNGG	3 cut(s)	304, 589, 799
BsaWI	WCCGGW	1 cut(s)	142
BsaXI	ACNNNNNCTCC	2 cut(s)	90, 120
Bsc4I	CCNNNNNNNGG	6 cut(s)	226, 318, 502, 596, 806, 961
Bse1I	ACTGG	1 cut(s)	100
Bse3DI	GCAATG	3 cut(s)	160, 412, 727
BseBI	CCWGG	2 cut(s)	591, 801
BseDI	CCNNGG	3 cut(s)	304, 589, 799
BseGI	GGATG	3 cut(s)	348, 703, 815
BseLI	CCNNNNNNNGG	6 cut(s)	226, 318, 502, 596, 806, 961
BseMI	GCAATG	3 cut(s)	160, 412, 727
BseMII	CTCAG	2 cut(s)	725, 932
BseNI	ACTGG	1 cut(s)	100
BseXI	GCAGC	2 cut(s)	669, 921
BshFI	GGCC	2 cut(s)	303, 588
BsiHKAI	GWGCWC	2 cut(s)	270, 747
BsiSI	CCGG	3 cut(s)	143, 444, 716
BslFI	GGGAC	4 cut(s)	139, 183, 438, 977
BslI	CCNNNNNNNGG	6 cut(s)	226, 318, 502, 596, 806, 961
BsmAI	GTCTC	2 cut(s)	519, 939
BsmBI	CGTCTC	1 cut(s)	519
BsmFI	GGGAC	4 cut(s)	139, 183, 438, 977
BsnI	GGCC	2 cut(s)	303, 588
Bsp1286I	GDGCHC	2 cut(s)	270, 747
Bsp143I	GATC	3 cut(s)	238, 246, 784
BspACI	CCGC	2 cut(s)	519, 966
BspANI	GGCC	2 cut(s)	303, 588
BspCNI	CTCAG	2 cut(s)	724, 933
BspLI	GGNNCC	8 cut(s)	141, 171, 196, 207, 310, 441, 992, 993
BspMAI	CTGCAG	1 cut(s)	911
BspMI	ACCTGC	1 cut(s)	175
BspPI	GGATC	2 cut(s)	246, 254
BsrDI	GCAATG	3 cut(s)	160, 412, 727
BsrI	ACTGG	1 cut(s)	100
BssECI	CCNNGG	3 cut(s)	304, 589, 799
BssMI	GATC	3 cut(s)	238, 246, 784
BssT1I	CCWWGG	1 cut(s)	304
Bst2UI	CCWGG	2 cut(s)	591, 801
Bst4CI	ACNGT	2 cut(s)	452, 631
BstDEI	CTNAG	4 cut(s)	661, 711, 941, 956
BstEII	GGTNACC	1 cut(s)	1056
BstENI	CCTNNNNNAGG	1 cut(s)	959
BstF5I	GGATG	3 cut(s)	348, 703, 815
BstHHI	GCGC	1 cut(s)	23
BstKTI	GATC	3 cut(s)	241, 249, 787
BstMAI	GTCTC	2 cut(s)	519, 939
BstMBI	GATC	3 cut(s)	238, 246, 784
BstMWI	GCNNNNNNNGC	1 cut(s)	612
BstNI	CCWGG	2 cut(s)	591, 801
BstPAI	GACNNNNGTC	1 cut(s)	351
BstPI	GGTNACC	1 cut(s)	1056
BstSCI	CCNGG	4 cut(s)	442, 589, 715, 799
BstSFI	CTRYAG	2 cut(s)	200, 907
BstV1I	GCAGC	2 cut(s)	669, 921
BsuRI	GGCC	2 cut(s)	303, 588
BtsCI	GGATG	3 cut(s)	348, 703, 815
BtsIMutI	CAGTG	5 cut(s)	93, 342, 459, 516, 627
BveI	ACCTGC	1 cut(s)	175
CfoI	GCGC	1 cut(s)	23
Cfr13I	GGNCC	3 cut(s)	170, 587, 991
Csp6I	GTAC	2 cut(s)	188, 669
CviAII	CATG	6 cut(s)	133, 281, 388, 596, 976, 1026
CviQI	GTAC	2 cut(s)	188, 669
DdeI	CTNAG	4 cut(s)	661, 711, 941, 956
DpnI	GATC	3 cut(s)	240, 248, 786
DpnII	GATC	3 cut(s)	238, 246, 784
EaeI	YGGCCR	1 cut(s)	301
EciI	GGCGGA	1 cut(s)	981
Eco130I	CCWWGG	1 cut(s)	304
Eco32I	GATATC	1 cut(s)	516
Eco47I	GGWCC	2 cut(s)	170, 991
Eco57I	CTGAAG	1 cut(s)	238
Eco91I	GGTNACC	1 cut(s)	1056
EcoNI	CCTNNNNNAGG	1 cut(s)	959
EcoO109I	RGGNCCY	1 cut(s)	991
EcoO65I	GGTNACC	1 cut(s)	1056
EcoRII	CCWGG	2 cut(s)	589, 799
EcoRV	GATATC	1 cut(s)	516
EcoT14I	CCWWGG	1 cut(s)	304
ErhI	CCWWGG	1 cut(s)	304
Esp3I	CGTCTC	1 cut(s)	519
FaeI	CATG	6 cut(s)	136, 284, 391, 599, 979, 1029
FalI	AAGNNNNNCTT	2 cut(s)	907, 939
FaqI	GGGAC	4 cut(s)	139, 183, 438, 977
FatI	CATG	6 cut(s)	132, 280, 387, 595, 975, 1025
FbaI	TGATCA	1 cut(s)	784
Fnu4HI	GCNGC	2 cut(s)	658, 910
FokI	GGATG	3 cut(s)	335, 690, 822
Fsp4HI	GCNGC	2 cut(s)	658, 910
FspBI	CTAG	2 cut(s)	573, 621
GlaI	GCGC	1 cut(s)	22
GluI	GCNGC	2 cut(s)	658, 910
GsuI	CTGGAG	1 cut(s)	117
HaeIII	GGCC	2 cut(s)	303, 588
HapII	CCGG	3 cut(s)	143, 444, 716
HhaI	GCGC	1 cut(s)	23
Hin1II	CATG	6 cut(s)	136, 284, 391, 599, 979, 1029
Hin6I	GCGC	1 cut(s)	21
HinP1I	GCGC	1 cut(s)	21
HincII	GTYRAC	1 cut(s)	853
HindII	GTYRAC	1 cut(s)	853
HinfI	GANTC	6 cut(s)	15, 73, 468, 506, 687, 824
HpaI	GTTAAC	1 cut(s)	853
HpaII	CCGG	3 cut(s)	143, 444, 716
HphI	GGTGA	3 cut(s)	157, 241, 1050
Hpy166II	GTNNAC	3 cut(s)	580, 853, 920
Hpy188I	TCNGA	5 cut(s)	257, 505, 611, 774, 840
Hpy188III	TCNNGA	3 cut(s)	58, 691, 994
Hpy8I	GTNNAC	3 cut(s)	580, 853, 920
Hpy99I	CGWCG	1 cut(s)	215
HpyAV	CCTTC	6 cut(s)	262, 550, 554, 980, 1045, 1071
HpyCH4III	ACNGT	2 cut(s)	452, 631
HpyCH4IV	ACGT	1 cut(s)	128
HpyCH4V	TGCA	7 cut(s)	29, 165, 184, 405, 534, 728, 909
HpyF10VI	GCNNNNNNNGC	1 cut(s)	612
HpyF3I	CTNAG	4 cut(s)	661, 711, 941, 956
HpySE526I	ACGT	1 cut(s)	128
Hsp92II	CATG	6 cut(s)	136, 284, 391, 599, 979, 1029
HspAI	GCGC	1 cut(s)	21
KflI	GGGWCCC	1 cut(s)	991
Ksp22I	TGATCA	1 cut(s)	784
KspAI	GTTAAC	1 cut(s)	853
Kzo9I	GATC	3 cut(s)	238, 246, 784
LmnI	GCTCC	5 cut(s)	145, 211, 308, 445, 968
Lsp1109I	GCAGC	2 cut(s)	669, 921
LweI	GCATC	1 cut(s)	615
MaeI	CTAG	2 cut(s)	573, 621
MaeII	ACGT	1 cut(s)	128
MaeIII	GTNAC	6 cut(s)	353, 446, 631, 803, 895, 1056
MalI	GATC	3 cut(s)	240, 248, 786
MboI	GATC	3 cut(s)	238, 246, 784
MboII	GAAGA	1 cut(s)	216
MhlI	GDGCHC	2 cut(s)	270, 747
MlyI	GAGTC	1 cut(s)	24
MmeI	TCCRAC	2 cut(s)	276, 510
MnlI	CCTC	4 cut(s)	46, 92, 322, 838
MroXI	GAANNNNTTC	2 cut(s)	395, 616
MseI	TTAA	5 cut(s)	843, 852, 858, 1038, 1072
MslI	CAYNNNNRTG	3 cut(s)	285, 386, 752
MspA1I	CMGCKG	1 cut(s)	940
MspI	CCGG	3 cut(s)	143, 444, 716
MspR9I	CCNGG	4 cut(s)	444, 591, 717, 801
MvaI	CCWGG	2 cut(s)	591, 801
MwoI	GCNNNNNNNGC	1 cut(s)	612
NciI	CCSGG	2 cut(s)	444, 717
NdeII	GATC	3 cut(s)	238, 246, 784
NlaIII	CATG	6 cut(s)	136, 284, 391, 599, 979, 1029
NlaIV	GGNNCC	8 cut(s)	141, 171, 196, 207, 310, 441, 992, 993
NmuCI	GTSAC	3 cut(s)	353, 803, 1056
PcsI	WCGNNNNNNNCGW	1 cut(s)	813
PdmI	GAANNNNTTC	2 cut(s)	395, 616
PfeI	GAWTC	5 cut(s)	73, 468, 506, 687, 824
PkrI	GCNGC	2 cut(s)	659, 911
PleI	GAGTC	1 cut(s)	23
PpsI	GAGTC	1 cut(s)	23
PpuMI	RGGWCCY	1 cut(s)	991
PshAI	GACNNNNGTC	1 cut(s)	351
Psp5II	RGGWCCY	1 cut(s)	991
Psp6I	CCWGG	2 cut(s)	589, 799
PspEI	GGTNACC	1 cut(s)	1056
PspGI	CCWGG	2 cut(s)	589, 799
PspN4I	GGNNCC	8 cut(s)	141, 171, 196, 207, 310, 441, 992, 993
PspPI	GGNCC	3 cut(s)	170, 587, 991
PspPPI	RGGWCCY	1 cut(s)	991
PstI	CTGCAG	1 cut(s)	911
PvuII	CAGCTG	1 cut(s)	940
RsaI	GTAC	2 cut(s)	189, 670
RsaNI	GTAC	2 cut(s)	188, 669
RseI	CAYNNNNRTG	3 cut(s)	285, 386, 752
SaqAI	TTAA	5 cut(s)	843, 852, 858, 1038, 1072
SatI	GCNGC	2 cut(s)	658, 910
Sau3AI	GATC	3 cut(s)	238, 246, 784
Sau96I	GGNCC	3 cut(s)	170, 587, 991
SchI	GAGTC	1 cut(s)	24
ScrFI	CCNGG	4 cut(s)	444, 591, 717, 801
SduI	GDGCHC	2 cut(s)	270, 747
SfaNI	GCATC	1 cut(s)	615
SfcI	CTRYAG	2 cut(s)	200, 907
SinI	GGWCC	2 cut(s)	170, 991
SmiMI	CAYNNNNRTG	3 cut(s)	285, 386, 752
SmlI	CTYRAG	1 cut(s)	58
SmoI	CTYRAG	1 cut(s)	58
SsiI	CCGC	2 cut(s)	519, 966
SspMI	CTAG	2 cut(s)	573, 621
StyD4I	CCNGG	4 cut(s)	442, 589, 715, 799
StyI	CCWWGG	1 cut(s)	304
TaaI	ACNGT	2 cut(s)	452, 631
TaiI	ACGT	1 cut(s)	131
TaqI	TCGA	1 cut(s)	213
TaqII	GACCGA	1 cut(s)	187
TfiI	GAWTC	5 cut(s)	73, 468, 506, 687, 824
Tru1I	TTAA	5 cut(s)	843, 852, 858, 1038, 1072
Tru9I	TTAA	5 cut(s)	843, 852, 858, 1038, 1072
TscAI	CASTG	5 cut(s)	100, 349, 466, 516, 634
TseFI	GTSAC	3 cut(s)	353, 803, 1056
TseI	GCWGC	2 cut(s)	657, 909
Tsp45I	GTSAC	3 cut(s)	353, 803, 1056
TspDTI	ATGAA	4 cut(s)	17, 121, 269, 404
TspGWI	ACGGA	2 cut(s)	341, 822
TspRI	CASTG	5 cut(s)	100, 349, 466, 516, 634
VpaK11BI	GGWCC	2 cut(s)	170, 991
XagI	CCTNNNNNAGG	1 cut(s)	959
XapI	RAATTY	2 cut(s)	38, 393
XcmI	CCANNNNNNNNNTGG	1 cut(s)	227
XmnI	GAANNNNTTC	2 cut(s)	395, 616
XspI	CTAG	2 cut(s)	573, 621

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.