Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0004836

Physical Location & Seq

Genomic Coordinates Reverse (-)

8230797 .. 8231114

Gene Structure 318 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g14720.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGGGTTATGGACTGAAAGTACAAGGAGACTTTGCAAAGGAATGTGTTTGTGCTAGTGGCTTTCGGGATGTTAACCTACAGAATTCAGCAGGGACAACTTGGCCTGCTATATTCAGTGTCGATGTATATAGTGTTGGACAACGACAGGGAAGAGTATCTTGGAAATCATTTGTGCAGGACAATCATCTCAAAGTAGGGGATGCCTGTGTGTTTGAGCTGATGAAAAAGGGATGTGAAGTTCCAACGTTTAAAGTCCACATATTCCGAGCTGAAGATGCAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

95

Amino Acids

10.42

Weight (kDa)

7.67

Isoelectric Point (pI)

21.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	10 - 89	4.6e-11	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004836)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g13840 FvH4_1g14720 FvH4_2g29240 FvH4_2g29322 FvH4_2g29350 FvH4_3g34770 FvH4_7g25080
malus_domestica	MD05G1037200.v1.1
prunus_persica	Prupe.7G143200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0103581 RchiOBHm_Chr5g0062511
rosa_laevigata	RLG00000017246 RLG00000035562
rosa_multiflora	Rmu_co8088552.1_g000001 Rmu_sc0001530.1_g000008 Rmu_sc0001852.1_g000021 Rmu_sc0004988.1_g000026
rosa_roxburghii	Rroxscaffold_1G00018100 Rroxscaffold_2G00139510
rosa_rugosa	Rorug02G0115900 Rorug05G0350300 Rorug05G0350300
rosa_samantha	Rh2AG164200 Rh2BG171400 Rh2CG170900 Rh2DG169500 Rh5AG410300 Rh5BG424300 Rh5DG438600
rosa_wichuraiana	Rw2G012910 Rw5G038630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	245
AcsI	RAATTY	1 cut(s)	82
AfaI	GTAC	1 cut(s)	21
AjuI	GAANNNNNNNTTGG	2 cut(s)	142, 174
AloI	GAACNNNNNNTCC	2 cut(s)	222, 254
AluBI	AGCT	2 cut(s)	217, 269
AluI	AGCT	2 cut(s)	217, 269
Alw26I	GTCTC	1 cut(s)	21
AoxI	GGCC	1 cut(s)	101
ApoI	RAATTY	1 cut(s)	82
BcoDI	GTCTC	1 cut(s)	21
BfaI	CTAG	1 cut(s)	54
BfmI	CTRYAG	1 cut(s)	77
BmsI	GCATC	2 cut(s)	190, 265
BseGI	GGATG	3 cut(s)	73, 205, 236
BsgI	GTGCAG	1 cut(s)	194
BshFI	GGCC	1 cut(s)	103
BslFI	GGGAC	1 cut(s)	106
BsmAI	GTCTC	1 cut(s)	21
BsmFI	GGGAC	1 cut(s)	106
BsnI	GGCC	1 cut(s)	103
BspANI	GGCC	1 cut(s)	103
Bst6I	CTCTTC	1 cut(s)	145
BstC8I	GCNNGC	1 cut(s)	105
BstF5I	GGATG	3 cut(s)	73, 205, 236
BstMAI	GTCTC	1 cut(s)	21
BstMWI	GCNNNNNNNGC	1 cut(s)	275
BstSFI	CTRYAG	1 cut(s)	77
BsuRI	GGCC	1 cut(s)	103
BtsCI	GGATG	3 cut(s)	73, 205, 236
BtsIMutI	CAGTG	1 cut(s)	121
Cac8I	GCNNGC	1 cut(s)	105
Csp6I	GTAC	1 cut(s)	20
CviJI	RGCY	4 cut(s)	60, 103, 217, 269
CviKI_1	RGCY	4 cut(s)	60, 103, 217, 269
CviQI	GTAC	1 cut(s)	20
DraI	TTTAAA	1 cut(s)	250
Eam1104I	CTCTTC	1 cut(s)	145
EarI	CTCTTC	1 cut(s)	145
EcoRI	GAATTC	1 cut(s)	82
FaiI	YATR	5 cut(s)	9, 110, 127, 129, 260
FalI	AAGNNNNNCTT	2 cut(s)	142, 174
FaqI	GGGAC	1 cut(s)	106
FokI	GGATG	3 cut(s)	80, 212, 243
FspBI	CTAG	1 cut(s)	54
HaeIII	GGCC	1 cut(s)	103
HincII	GTYRAC	1 cut(s)	73
HindII	GTYRAC	1 cut(s)	73
HpaI	GTTAAC	1 cut(s)	73
Hpy166II	GTNNAC	2 cut(s)	73, 256
Hpy188I	TCNGA	1 cut(s)	266
Hpy188III	TCNNGA	1 cut(s)	65
Hpy8I	GTNNAC	2 cut(s)	73, 256
HpyCH4IV	ACGT	1 cut(s)	245
HpyCH4V	TGCA	3 cut(s)	35, 175, 278
HpyF10VI	GCNNNNNNNGC	1 cut(s)	275
HpySE526I	ACGT	1 cut(s)	245
KspAI	GTTAAC	1 cut(s)	73
LpnPI	CCDG	5 cut(s)	75, 117, 131, 161, 217
LweI	GCATC	2 cut(s)	190, 265
MaeI	CTAG	1 cut(s)	54
MaeII	ACGT	1 cut(s)	245
MboII	GAAGA	2 cut(s)	162, 284
MluCI	AATT	2 cut(s)	82, 280
MmeI	TCCRAC	2 cut(s)	115, 266
MseI	TTAA	2 cut(s)	72, 249
MwoI	GCNNNNNNNGC	1 cut(s)	275
Psp1406I	AACGTT	1 cut(s)	245
RsaI	GTAC	1 cut(s)	21
RsaNI	GTAC	1 cut(s)	20
SaqAI	TTAA	2 cut(s)	72, 249
SetI	ASST	4 cut(s)	78, 219, 248, 271
SfaNI	GCATC	2 cut(s)	190, 265
SfcI	CTRYAG	1 cut(s)	77
Sse9I	AATT	2 cut(s)	82, 280
SspMI	CTAG	1 cut(s)	54
TaiI	ACGT	1 cut(s)	248
TaqI	TCGA	1 cut(s)	120
TasI	AATT	2 cut(s)	82, 280
TatI	WGTACW	1 cut(s)	19
Tru1I	TTAA	2 cut(s)	72, 249
Tru9I	TTAA	2 cut(s)	72, 249
TscAI	CASTG	1 cut(s)	121
TspDTI	ATGAA	1 cut(s)	236
TspRI	CASTG	1 cut(s)	121
XapI	RAATTY	1 cut(s)	82
XspI	CTAG	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.