Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0004836

Physical Location & Seq

Genomic Coordinates Forward (+)

68600431 .. 68602082

Gene Structure 1652 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035562

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGGCTTCTTCGAGCAGGAGAAAGAGCAGTGCTAAAGGAGTTGCCTCTCCAAGCTTCTTCAAGGTTGTTGTGGATGAGGCTCTTGAAGATGGGATGCTTAAATTGAATGCAGCCTTTGTGAATGAAAATATCTGTGCAACAGGCGCCACTCGCAAAATCAAGCTACAGATTCCAAATGGGAAAACCTGGTCTGCTAAGTGCACTGTCTACTTATGCATGAACAAAGACTATGCACAAATCTGCAGTGGTTGGACAAAGTTTGCGGCGGAAAATAAGCTGCAAGTAGGGGATGCTTGTGCGTTGGAGCTGATAAAGGAGTGCCCTAAACTTACATTCTTGGTTCACATATTCCGGGCTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

121

Amino Acids

13.15

Weight (kDa)

9.24

Isoelectric Point (pI)

46.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	19 - 120	2.4e-14	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0004836)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g13840 FvH4_1g14720 FvH4_2g29240 FvH4_2g29322 FvH4_2g29350 FvH4_3g34770 FvH4_7g25080
malus_domestica	MD05G1037200.v1.1
prunus_persica	Prupe.7G143200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0103581 RchiOBHm_Chr5g0062511
rosa_laevigata	RLG00000017246 RLG00000035562
rosa_multiflora	Rmu_co8088552.1_g000001 Rmu_sc0001530.1_g000008 Rmu_sc0001852.1_g000021 Rmu_sc0004988.1_g000026
rosa_roxburghii	Rroxscaffold_1G00018100 Rroxscaffold_2G00139510
rosa_rugosa	Rorug02G0115900 Rorug05G0350300 Rorug05G0350300
rosa_samantha	Rh2AG164200 Rh2BG171400 Rh2CG170900 Rh2DG169500 Rh5AG410300 Rh5BG424300 Rh5DG438600
rosa_wichuraiana	Rw2G012910 Rw5G038630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	143
AccI	GTMKAC	1 cut(s)	207
AciI	CCGC	2 cut(s)	263, 266
AcyI	GRCGYC	1 cut(s)	144
AgsI	TTSAA	3 cut(s)	61, 86, 106
AjnI	CCWGG	1 cut(s)	185
AluBI	AGCT	4 cut(s)	54, 163, 277, 307
AluI	AGCT	4 cut(s)	54, 163, 277, 307
Alw21I	GWGCWC	1 cut(s)	203
Alw44I	GTGCAC	1 cut(s)	199
ApaLI	GTGCAC	1 cut(s)	199
ApeKI	GCWGC	2 cut(s)	110, 277
AspLEI	GCGC	1 cut(s)	146
AsuC2I	CCSGG	1 cut(s)	353
BaeGI	GKGCMC	2 cut(s)	203, 323
BanI	GGYRCC	1 cut(s)	143
Bbv12I	GWGCWC	1 cut(s)	203
BbvI	GCAGC	2 cut(s)	122, 264
BccI	CCATC	1 cut(s)	83
BciT130I	CCWGG	1 cut(s)	187
BcnI	CCSGG	1 cut(s)	353
BfmI	CTRYAG	2 cut(s)	164, 241
BfoI	RGCGCY	1 cut(s)	147
BisI	GCNGC	3 cut(s)	111, 264, 278
BlsI	GCNGC	3 cut(s)	112, 265, 279
Bme1390I	CCNGG	2 cut(s)	187, 353
BmiI	GGNNCC	1 cut(s)	145
BmrFI	CCNGG	2 cut(s)	187, 353
BmsI	GCATC	2 cut(s)	84, 280
BpuMI	CCSGG	1 cut(s)	353
BsaHI	GRCGYC	1 cut(s)	144
BseBI	CCWGG	1 cut(s)	187
BseGI	GGATG	3 cut(s)	79, 99, 295
BseSI	GKGCMC	2 cut(s)	203, 323
BseXI	GCAGC	2 cut(s)	122, 264
BshNI	GGYRCC	1 cut(s)	143
BsiHKAI	GWGCWC	1 cut(s)	203
BsiSI	CCGG	1 cut(s)	352
BsmI	GAATGC	1 cut(s)	112
Bsp1286I	GDGCHC	2 cut(s)	203, 323
BspACI	CCGC	2 cut(s)	263, 266
BspLI	GGNNCC	1 cut(s)	145
BspMAI	CTGCAG	1 cut(s)	245
BspT107I	GGYRCC	1 cut(s)	143
BssNI	GRCGYC	1 cut(s)	144
Bst2UI	CCWGG	1 cut(s)	187
Bst4CI	ACNGT	1 cut(s)	205
BstACI	GRCGYC	1 cut(s)	144
BstDEI	CTNAG	1 cut(s)	195
BstF5I	GGATG	3 cut(s)	79, 99, 295
BstH2I	RGCGCY	1 cut(s)	147
BstHHI	GCGC	1 cut(s)	146
BstMWI	GCNNNNNNNGC	2 cut(s)	143, 150
BstNI	CCWGG	1 cut(s)	187
BstSCI	CCNGG	2 cut(s)	185, 351
BstSFI	CTRYAG	2 cut(s)	164, 241
BstSLI	GKGCMC	2 cut(s)	203, 323
BstV1I	GCAGC	2 cut(s)	122, 264
BtsCI	GGATG	3 cut(s)	79, 99, 295
BtsI	GCAGTG	2 cut(s)	34, 250
BtsIMutI	CAGTG	3 cut(s)	34, 201, 250
CfoI	GCGC	1 cut(s)	146
CsiI	ACCWGGT	1 cut(s)	185
CviAII	CATG	1 cut(s)	217
CviJI	RGCY	8 cut(s)	5, 54, 80, 113, 163, 277, 307, 356
CviKI_1	RGCY	8 cut(s)	5, 54, 80, 113, 163, 277, 307, 356
DdeI	CTNAG	1 cut(s)	195
DinI	GGCGCC	1 cut(s)	145
EciI	GGCGGA	1 cut(s)	281
EcoRII	CCWGG	1 cut(s)	185
EcoT22I	ATGCAT	1 cut(s)	218
EgeI	GGCGCC	1 cut(s)	145
EheI	GGCGCC	1 cut(s)	145
FaeI	CATG	1 cut(s)	220
FaiI	YATR	4 cut(s)	214, 218, 231, 347
FatI	CATG	1 cut(s)	216
FblI	GTMKAC	1 cut(s)	207
Fnu4HI	GCNGC	3 cut(s)	111, 264, 278
FokI	GGATG	3 cut(s)	86, 106, 302
Fsp4HI	GCNGC	3 cut(s)	111, 264, 278
GlaI	GCGC	1 cut(s)	145
GluI	GCNGC	3 cut(s)	111, 264, 278
HaeII	RGCGCY	1 cut(s)	147
HapII	CCGG	1 cut(s)	352
HhaI	GCGC	1 cut(s)	146
Hin1I	GRCGYC	1 cut(s)	144
Hin1II	CATG	1 cut(s)	220
Hin6I	GCGC	1 cut(s)	144
HinP1I	GCGC	1 cut(s)	144
HindIII	AAGCTT	1 cut(s)	52
HinfI	GANTC	1 cut(s)	169
HpaII	CCGG	1 cut(s)	352
Hpy166II	GTNNAC	3 cut(s)	201, 208, 343
Hpy188III	TCNNGA	1 cut(s)	83
Hpy8I	GTNNAC	3 cut(s)	201, 208, 343
HpyCH4III	ACNGT	1 cut(s)	205
HpyCH4V	TGCA	7 cut(s)	110, 137, 201, 216, 233, 243, 280
HpyF10VI	GCNNNNNNNGC	2 cut(s)	143, 150
HpyF3I	CTNAG	1 cut(s)	195
Hsp92I	GRCGYC	1 cut(s)	144
Hsp92II	CATG	1 cut(s)	220
HspAI	GCGC	1 cut(s)	144
KasI	GGCGCC	1 cut(s)	143
LmnI	GCTCC	1 cut(s)	304
LpnPI	CCDG	3 cut(s)	126, 172, 199
Lsp1109I	GCAGC	2 cut(s)	122, 264
LweI	GCATC	2 cut(s)	84, 280
MabI	ACCWGGT	1 cut(s)	185
MboII	GAAGA	2 cut(s)	49, 98
MhlI	GDGCHC	2 cut(s)	203, 323
MluCI	AATT	2 cut(s)	101, 358
Mly113I	GGCGCC	1 cut(s)	144
MmeI	TCCRAC	2 cut(s)	230, 282
MnlI	CCTC	2 cut(s)	55, 70
Mph1103I	ATGCAT	1 cut(s)	218
MseI	TTAA	2 cut(s)	99, 361
MspI	CCGG	1 cut(s)	352
MspR9I	CCNGG	2 cut(s)	187, 353
Mva1269I	GAATGC	1 cut(s)	112
MvaI	CCWGG	1 cut(s)	187
MwoI	GCNNNNNNNGC	2 cut(s)	143, 150
NarI	GGCGCC	1 cut(s)	144
NciI	CCSGG	1 cut(s)	353
NlaIII	CATG	1 cut(s)	220
NlaIV	GGNNCC	1 cut(s)	145
NsiI	ATGCAT	1 cut(s)	218
PctI	GAATGC	1 cut(s)	112
PfeI	GAWTC	1 cut(s)	169
PkrI	GCNGC	3 cut(s)	112, 265, 279
PluTI	GGCGCC	1 cut(s)	147
Psp6I	CCWGG	1 cut(s)	185
PspGI	CCWGG	1 cut(s)	185
PspN4I	GGNNCC	1 cut(s)	145
PstI	CTGCAG	1 cut(s)	245
SaqAI	TTAA	2 cut(s)	99, 361
SatI	GCNGC	3 cut(s)	111, 264, 278
ScrFI	CCNGG	2 cut(s)	187, 353
SduI	GDGCHC	2 cut(s)	203, 323
SetI	ASST	6 cut(s)	56, 66, 165, 188, 279, 309
SexAI	ACCWGGT	1 cut(s)	185
SfaNI	GCATC	2 cut(s)	84, 280
SfcI	CTRYAG	2 cut(s)	164, 241
SfoI	GGCGCC	1 cut(s)	145
Sse9I	AATT	2 cut(s)	101, 358
SsiI	CCGC	2 cut(s)	263, 266
SspDI	GGCGCC	1 cut(s)	143
StyD4I	CCNGG	2 cut(s)	185, 351
TaaI	ACNGT	1 cut(s)	205
TaqI	TCGA	1 cut(s)	11
TasI	AATT	2 cut(s)	101, 358
TauI	GCSGC	1 cut(s)	266
TfiI	GAWTC	1 cut(s)	169
Tru1I	TTAA	2 cut(s)	99, 361
Tru9I	TTAA	2 cut(s)	99, 361
TscAI	CASTG	3 cut(s)	34, 208, 250
TseI	GCWGC	2 cut(s)	110, 277
TspDTI	ATGAA	2 cut(s)	138, 233
TspRI	CASTG	3 cut(s)	34, 208, 250
VneI	GTGCAC	1 cut(s)	199
XmiI	GTMKAC	1 cut(s)	207
Zsp2I	ATGCAT	1 cut(s)	218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.