Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0004836

Physical Location & Seq

Genomic Coordinates Forward (+)

22781698 .. 22782388

Gene Structure 691 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g29350.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGGTTTCCCTAGAAAATGGCTGCATCTTGGTTTTCGGATATAAGGGGATTCATTCCTGTTTCAATGTTCGTGTCCTTGAAAAGAACGGTTTGGAGGTAGACTATCCATCCAAATCAAGCCATCATAACAAAGCCGATTTCTGCAGAGCATATGATGAAGCATTTTCAAGAACTAGTAGATTCCACTCCGACCGTCCATTTCTTGCTCTCAAATTGCACTCCTCATACATTGCCAATCCTTTGAACATCCAAGAGTCCTTTGTTCATCAATACGTCTTTCAAGGACACCTCAGTCGCAGTGTAAACCTACAGATTCCAAATGGGGGAACTTGGTGTGCTAAATGCACTGTCAGCCGGTGCGGGGAACACGACTATGCAAGAATCCACGGCGGTTGGACAAAATTTGCAAGAGATAATGATTTGCAAGGAGGGGATGTTATTGTGATCGATCTGATTCAGCAGCAGCCTGAAGTCCATATTTATCGATCTCAAATTTCAAAGATGTATGTAGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

172

Amino Acids

19.46

Weight (kDa)

8.22

Isoelectric Point (pI)

46.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	73 - 163	9.3e-11	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004836)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g13840 FvH4_1g14720 FvH4_2g29240 FvH4_2g29322 FvH4_2g29350 FvH4_3g34770 FvH4_7g25080
malus_domestica	MD05G1037200.v1.1
prunus_persica	Prupe.7G143200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0103581 RchiOBHm_Chr5g0062511
rosa_laevigata	RLG00000017246 RLG00000035562
rosa_multiflora	Rmu_co8088552.1_g000001 Rmu_sc0001530.1_g000008 Rmu_sc0001852.1_g000021 Rmu_sc0004988.1_g000026
rosa_roxburghii	Rroxscaffold_1G00018100 Rroxscaffold_2G00139510
rosa_rugosa	Rorug02G0115900 Rorug05G0350300 Rorug05G0350300
rosa_samantha	Rh2AG164200 Rh2BG171400 Rh2CG170900 Rh2DG169500 Rh5AG410300 Rh5BG424300 Rh5DG438600
rosa_wichuraiana	Rw2G012910 Rw5G038630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	291
AccI	GTMKAC	1 cut(s)	99
AciI	CCGC	2 cut(s)	360, 390
AcsI	RAATTY	2 cut(s)	401, 492
AcuI	CTGAAG	1 cut(s)	489
AfiI	CCNNNNNNNGG	2 cut(s)	323, 361
AgsI	TTSAA	6 cut(s)	64, 80, 168, 244, 281, 498
AhlI	ACTAGT	1 cut(s)	173
ApeKI	GCWGC	3 cut(s)	21, 460, 463
ApoI	RAATTY	2 cut(s)	401, 492
BbvI	GCAGC	3 cut(s)	8, 472, 475
BccI	CCATC	2 cut(s)	115, 129
BceAI	ACGGC	1 cut(s)	403
BcuI	ACTAGT	1 cut(s)	173
BfaI	CTAG	2 cut(s)	11, 174
BfmI	CTRYAG	2 cut(s)	142, 308
BisI	GCNGC	3 cut(s)	22, 461, 464
BlsI	GCNGC	3 cut(s)	23, 462, 465
BmsI	GCATC	1 cut(s)	33
Bsa29I	ATCGAT	2 cut(s)	447, 484
BsaJI	CCNNGG	1 cut(s)	385
BsaXI	ACNNNNNCTCC	2 cut(s)	420, 450
Bsc4I	CCNNNNNNNGG	2 cut(s)	323, 361
Bse118I	RCCGGY	1 cut(s)	354
Bse3DI	GCAATG	1 cut(s)	228
BseCI	ATCGAT	2 cut(s)	447, 484
BseDI	CCNNGG	1 cut(s)	385
BseGI	GGATG	3 cut(s)	107, 246, 439
BseLI	CCNNNNNNNGG	2 cut(s)	323, 361
BseMI	GCAATG	1 cut(s)	228
BseMII	CTCAG	1 cut(s)	304
BseRI	GAGGAG	1 cut(s)	211
BseXI	GCAGC	3 cut(s)	8, 472, 475
Bsh1285I	CGRYCG	1 cut(s)	193
BshVI	ATCGAT	2 cut(s)	447, 484
BsiEI	CGRYCG	1 cut(s)	193
BsiSI	CCGG	1 cut(s)	355
BslI	CCNNNNNNNGG	2 cut(s)	323, 361
Bsp143I	GATC	3 cut(s)	444, 448, 485
BspACI	CCGC	2 cut(s)	360, 390
BspCNI	CTCAG	1 cut(s)	303
BspDI	ATCGAT	2 cut(s)	447, 484
BspMAI	CTGCAG	1 cut(s)	146
BsrDI	GCAATG	1 cut(s)	228
BsrFI	RCCGGY	1 cut(s)	354
BssAI	RCCGGY	1 cut(s)	354
BssECI	CCNNGG	1 cut(s)	385
BssMI	GATC	3 cut(s)	444, 448, 485
Bst4CI	ACNGT	3 cut(s)	89, 194, 349
BstDEI	CTNAG	1 cut(s)	290
BstDSI	CCRYGG	1 cut(s)	385
BstF5I	GGATG	3 cut(s)	107, 246, 439
BstKTI	GATC	3 cut(s)	447, 451, 488
BstMBI	GATC	3 cut(s)	444, 448, 485
BstMCI	CGRYCG	1 cut(s)	193
BstMWI	GCNNNNNNNGC	1 cut(s)	351
BstSFI	CTRYAG	2 cut(s)	142, 308
BstV1I	GCAGC	3 cut(s)	8, 472, 475
Bsu15I	ATCGAT	2 cut(s)	447, 484
BsuTUI	ATCGAT	2 cut(s)	447, 484
BtgI	CCRYGG	1 cut(s)	385
BtsCI	GGATG	3 cut(s)	107, 246, 439
BtsI	GCAGTG	1 cut(s)	304
BtsIMutI	CAGTG	2 cut(s)	304, 345
Cfr10I	RCCGGY	1 cut(s)	354
ClaI	ATCGAT	2 cut(s)	447, 484
CspCI	CAANNNNNGTGG	2 cut(s)	374, 409
CviJI	RGCY	6 cut(s)	21, 120, 134, 354, 466, 513
CviKI_1	RGCY	6 cut(s)	21, 120, 134, 354, 466, 513
DdeI	CTNAG	1 cut(s)	290
DpnI	GATC	3 cut(s)	446, 450, 487
DpnII	GATC	3 cut(s)	444, 448, 485
DrdI	GACNNNNNNGTC	1 cut(s)	291
DseDI	GACNNNNNNGTC	1 cut(s)	291
Eco57I	CTGAAG	1 cut(s)	489
FaiI	YATR	8 cut(s)	42, 126, 151, 153, 226, 375, 477, 507
FauI	CCCGC	1 cut(s)	353
FauNDI	CATATG	1 cut(s)	151
FblI	GTMKAC	1 cut(s)	99
Fnu4HI	GCNGC	3 cut(s)	22, 461, 464
FokI	GGATG	3 cut(s)	94, 233, 446
Fsp4HI	GCNGC	3 cut(s)	22, 461, 464
FspBI	CTAG	2 cut(s)	11, 174
GluI	GCNGC	3 cut(s)	22, 461, 464
HapII	CCGG	1 cut(s)	355
HinfI	GANTC	6 cut(s)	49, 180, 254, 313, 381, 454
HpaII	CCGG	1 cut(s)	355
Hpy166II	GTNNAC	2 cut(s)	100, 304
Hpy188I	TCNGA	3 cut(s)	38, 190, 453
Hpy188III	TCNNGA	1 cut(s)	168
Hpy8I	GTNNAC	2 cut(s)	100, 304
HpyCH4III	ACNGT	3 cut(s)	89, 194, 349
HpyCH4IV	ACGT	1 cut(s)	273
HpyCH4V	TGCA	7 cut(s)	24, 144, 217, 345, 377, 407, 424
HpyF10VI	GCNNNNNNNGC	1 cut(s)	351
HpyF3I	CTNAG	1 cut(s)	290
HpySE526I	ACGT	1 cut(s)	273
Kzo9I	GATC	3 cut(s)	444, 448, 485
LpnPI	CCDG	3 cut(s)	70, 368, 480
Lsp1109I	GCAGC	3 cut(s)	8, 472, 475
LweI	GCATC	1 cut(s)	33
MaeI	CTAG	2 cut(s)	11, 174
MaeII	ACGT	1 cut(s)	273
MalI	GATC	3 cut(s)	446, 450, 487
MboI	GATC	3 cut(s)	444, 448, 485
MluCI	AATT	3 cut(s)	212, 401, 492
MlyI	GAGTC	1 cut(s)	263
MmeI	TCCRAC	2 cut(s)	213, 374
MnlI	CCTC	4 cut(s)	88, 232, 299, 422
MslI	CAYNNNNRTG	1 cut(s)	372
MspI	CCGG	1 cut(s)	355
MwoI	GCNNNNNNNGC	1 cut(s)	351
NdeI	CATATG	1 cut(s)	151
NdeII	GATC	3 cut(s)	444, 448, 485
PfeI	GAWTC	5 cut(s)	49, 180, 313, 381, 454
PkrI	GCNGC	3 cut(s)	23, 462, 465
PleI	GAGTC	1 cut(s)	262
PpsI	GAGTC	1 cut(s)	262
PstI	CTGCAG	1 cut(s)	146
RseI	CAYNNNNRTG	1 cut(s)	372
SatI	GCNGC	3 cut(s)	22, 461, 464
Sau3AI	GATC	3 cut(s)	444, 448, 485
SchI	GAGTC	1 cut(s)	263
SetI	ASST	4 cut(s)	99, 276, 291, 309
SfaNI	GCATC	1 cut(s)	33
SfcI	CTRYAG	2 cut(s)	142, 308
SmiMI	CAYNNNNRTG	1 cut(s)	372
SpeI	ACTAGT	1 cut(s)	173
Sse9I	AATT	3 cut(s)	212, 401, 492
SsiI	CCGC	2 cut(s)	360, 390
SspMI	CTAG	2 cut(s)	11, 174
TaaI	ACNGT	3 cut(s)	89, 194, 349
TaiI	ACGT	1 cut(s)	276
TaqI	TCGA	2 cut(s)	447, 484
TasI	AATT	3 cut(s)	212, 401, 492
TfiI	GAWTC	5 cut(s)	49, 180, 313, 381, 454
TscAI	CASTG	2 cut(s)	304, 352
TseI	GCWGC	3 cut(s)	21, 460, 463
TspDTI	ATGAA	3 cut(s)	41, 171, 254
TspRI	CASTG	2 cut(s)	304, 352
XapI	RAATTY	2 cut(s)	401, 492
XmiI	GTMKAC	1 cut(s)	99
XspI	CTAG	2 cut(s)	11, 174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.