Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0004836

Physical Location & Seq

Genomic Coordinates Forward (+)

77884852 .. 77886462

Gene Structure 1611 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00139510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGAGAGAAACAGAAGAGCCGTCTCCTTTTGCCGCCAAATCTCCAAGCTTCTTCAAGATCGTTCTTGACAGTGCACTTCGAGATGGAAAGATTGAAATTCCAAAGGCATTTGTGATGAAGCGTGGAAAGTGTTTGGCAGAGTCAGTCTTGCTTAAGGTGCCCAGCGGAGCAGAATGGCGAATAGGATTGACAAGGTGTGATGGTGAGGTTTGGTTAGAAAAGGGCTGGCCAGAATTCGCAAAGTTTTACTTCCTAGACCATGGATACTTGTTAGTGTTCAGTTGTGAAGGTGATTATGCCAGTTTCCAAGTGCAAATTTTTAGTAGGAATACTATGGAGATAGATTATCCCATGGGCGAGGGGGAAGAACTGGAAGATGATGATGTTTCTGTTGAAATATTGGATGTGGTTCCCTCAAAGAAAAGAGGGAGAAGAGAATTGGCAAGCCTTTGGCCTCATAAGACGATGAGGACAAAATCAGGTGATGAAGCTGAAGTGAATTCCTACCCCAGAGGTAAAACTAAAGATCAAGGAGTGAAGCATCAAAGAGAAAAGAGAAGTTATGGTACTCCTAGTTCCTTGAAGAATAATTGTCAAAGCGGAGGGGGAAGCATGCCTACTGCATCAACATCTTTAGAGGCTAATAAGCACGATGTCTATACAAGAGATGGAGCGTTTCTGAGAGCTACAAGTTTCAAGTATAGTAATCCACATCTTGTAGTCAGAATGCAAAAATCATACCTATCAAGATATTTGAAATTACAAGGAGCCTTTGCAAAAGAATGTGTTTGTGCTAGAGGTGTTCGTATTGTTAACCTACAGAATTCGGCTGGGAGAATTTGGCCTGCTACGTTCACTGTCGAGGTATGGAGTGAGGGAAAGCAACGACAAGGAAGAGTATCTTGGAAATCATTTGTGCATGACAATCATCTCAAAGTAGGGGATGCCTGTGTGTTTGAGCTGAAAAAGGGATGCGAAGTTCCAACGTTTAAAGTTCACATATTCCGAGCTGAAGATGCAGATGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

342

Amino Acids

38.66

Weight (kDa)

8.86

Isoelectric Point (pI)

41.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	18 - 110	1.7e-11	B3 DNA binding domain
B3	PF02362	251 - 337	1e-10	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004836)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g13840 FvH4_1g14720 FvH4_2g29240 FvH4_2g29322 FvH4_2g29350 FvH4_3g34770 FvH4_7g25080
malus_domestica	MD05G1037200.v1.1
prunus_persica	Prupe.7G143200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0103581 RchiOBHm_Chr5g0062511
rosa_laevigata	RLG00000017246 RLG00000035562
rosa_multiflora	Rmu_co8088552.1_g000001 Rmu_sc0001530.1_g000008 Rmu_sc0001852.1_g000021 Rmu_sc0004988.1_g000026
rosa_roxburghii	Rroxscaffold_1G00018100 Rroxscaffold_2G00139510
rosa_rugosa	Rorug02G0115900 Rorug05G0350300 Rorug05G0350300
rosa_samantha	Rh2AG164200 Rh2BG171400 Rh2CG170900 Rh2DG169500 Rh5AG410300 Rh5BG424300 Rh5DG438600
rosa_wichuraiana	Rw2G012910 Rw5G038630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	157
AciI	CCGC	3 cut(s)	33, 165, 600
AclI	AACGTT	1 cut(s)	986
AcoI	YGGCCR	1 cut(s)	227
AcsI	RAATTY	6 cut(s)	96, 233, 315, 499, 823, 837
AcuI	CTGAAG	1 cut(s)	513
AfaI	GTAC	1 cut(s)	568
AflII	CTTAAG	1 cut(s)	152
AgsI	TTSAA	6 cut(s)	55, 95, 395, 583, 697, 757
AjuI	GAANNNNNNNTTGG	2 cut(s)	886, 918
AloI	GAACNNNNNNTCC	2 cut(s)	963, 995
AluBI	AGCT	5 cut(s)	48, 491, 686, 961, 1010
AluI	AGCT	5 cut(s)	48, 491, 686, 961, 1010
Alw21I	GWGCWC	1 cut(s)	76
Alw26I	GTCTC	1 cut(s)	27
Alw44I	GTGCAC	1 cut(s)	72
AoxI	GGCC	3 cut(s)	227, 452, 842
ApaLI	GTGCAC	1 cut(s)	72
ApoI	RAATTY	6 cut(s)	96, 233, 315, 499, 823, 837
AsuHPI	GGTGA	3 cut(s)	215, 302, 494
BaeGI	GKGCMC	2 cut(s)	76, 162
BalI	TGGCCA	1 cut(s)	229
BanI	GGYRCC	1 cut(s)	157
BarI	GAAGNNNNNNTAC	4 cut(s)	550, 582, 601, 633
Bbv12I	GWGCWC	1 cut(s)	76
BccI	CCATC	3 cut(s)	77, 194, 662
BceAI	ACGGC	1 cut(s)	4
BciVI	GTATCC	1 cut(s)	257
BcoDI	GTCTC	1 cut(s)	27
BfaI	CTAG	3 cut(s)	254, 573, 795
BfmI	CTRYAG	1 cut(s)	818
BfrI	CTTAAG	1 cut(s)	152
BfuI	GTATCC	1 cut(s)	257
BisI	GCNGC	1 cut(s)	33
BlsI	GCNGC	1 cut(s)	34
BmiI	GGNNCC	3 cut(s)	159, 411, 769
BmsI	GCATC	6 cut(s)	550, 632, 934, 962, 1006, 1012
BsaJI	CCNNGG	2 cut(s)	259, 351
Bse1I	ACTGG	2 cut(s)	300, 375
BseDI	CCNNGG	2 cut(s)	259, 351
BseGI	GGATG	3 cut(s)	409, 949, 977
BseMII	CTCAG	1 cut(s)	671
BseNI	ACTGG	2 cut(s)	300, 375
BseSI	GKGCMC	2 cut(s)	76, 162
BseYI	CCCAGC	2 cut(s)	161, 830
BshFI	GGCC	3 cut(s)	229, 454, 844
BshNI	GGYRCC	1 cut(s)	157
BsiHKAI	GWGCWC	1 cut(s)	76
BsmAI	GTCTC	1 cut(s)	27
BsmBI	CGTCTC	1 cut(s)	27
BsmI	GAATGC	1 cut(s)	732
BsnI	GGCC	3 cut(s)	229, 454, 844
Bsp1286I	GDGCHC	2 cut(s)	76, 162
Bsp143I	GATC	2 cut(s)	57, 526
Bsp19I	CCATGG	2 cut(s)	259, 351
BspACI	CCGC	3 cut(s)	33, 165, 600
BspANI	GGCC	3 cut(s)	229, 454, 844
BspCNI	CTCAG	1 cut(s)	672
BspLI	GGNNCC	3 cut(s)	159, 411, 769
BspQI	GCTCTTC	1 cut(s)	9
BspT107I	GGYRCC	1 cut(s)	157
BspTI	CTTAAG	1 cut(s)	152
BsrI	ACTGG	2 cut(s)	300, 375
BssECI	CCNNGG	2 cut(s)	259, 351
BssMI	GATC	2 cut(s)	57, 526
BssT1I	CCWWGG	2 cut(s)	259, 351
Bst4CI	ACNGT	2 cut(s)	71, 859
Bst6I	CTCTTC	3 cut(s)	9, 427, 889
BstAFI	CTTAAG	1 cut(s)	152
BstC8I	GCNNGC	4 cut(s)	227, 445, 614, 846
BstDEI	CTNAG	1 cut(s)	680
BstDSI	CCRYGG	2 cut(s)	259, 351
BstF5I	GGATG	3 cut(s)	409, 949, 977
BstKTI	GATC	2 cut(s)	60, 529
BstMAI	GTCTC	1 cut(s)	27
BstMBI	GATC	2 cut(s)	57, 526
BstMWI	GCNNNNNNNGC	2 cut(s)	157, 1016
BstNSI	RCATGY	1 cut(s)	616
BstSFI	CTRYAG	1 cut(s)	818
BstSLI	GKGCMC	2 cut(s)	76, 162
BsuI	GTATCC	1 cut(s)	257
BsuRI	GGCC	3 cut(s)	229, 454, 844
BtgI	CCRYGG	2 cut(s)	259, 351
BtsCI	GGATG	3 cut(s)	409, 949, 977
BtsIMutI	CAGTG	2 cut(s)	76, 855
Cac8I	GCNNGC	4 cut(s)	227, 445, 614, 846
Csp6I	GTAC	1 cut(s)	567
CviAII	CATG	4 cut(s)	260, 352, 613, 920
CviQI	GTAC	1 cut(s)	567
DdeI	CTNAG	1 cut(s)	680
DpnI	GATC	2 cut(s)	59, 528
DpnII	GATC	2 cut(s)	57, 526
DraI	TTTAAA	1 cut(s)	991
EaeI	YGGCCR	1 cut(s)	227
Eam1104I	CTCTTC	3 cut(s)	9, 427, 889
EarI	CTCTTC	3 cut(s)	9, 427, 889
Eco130I	CCWWGG	2 cut(s)	259, 351
Eco57I	CTGAAG	1 cut(s)	513
EcoRI	GAATTC	3 cut(s)	233, 499, 823
EcoT14I	CCWWGG	2 cut(s)	259, 351
ErhI	CCWWGG	2 cut(s)	259, 351
Esp3I	CGTCTC	1 cut(s)	27
FaeI	CATG	4 cut(s)	263, 355, 616, 923
FalI	AAGNNNNNCTT	4 cut(s)	233, 265, 886, 918
FatI	CATG	4 cut(s)	259, 351, 612, 919
Fnu4HI	GCNGC	1 cut(s)	33
FokI	GGATG	3 cut(s)	416, 956, 984
Fsp4HI	GCNGC	1 cut(s)	33
FspBI	CTAG	3 cut(s)	254, 573, 795
GluI	GCNGC	1 cut(s)	33
GsaI	CCCAGC	2 cut(s)	165, 834
HaeIII	GGCC	3 cut(s)	229, 454, 844
Hin1II	CATG	4 cut(s)	263, 355, 616, 923
HincII	GTYRAC	1 cut(s)	814
HindII	GTYRAC	1 cut(s)	814
HindIII	AAGCTT	1 cut(s)	46
HinfI	GANTC	1 cut(s)	140
HpaI	GTTAAC	1 cut(s)	814
HphI	GGTGA	3 cut(s)	215, 302, 494
Hpy166II	GTNNAC	4 cut(s)	74, 814, 855, 997
Hpy188I	TCNGA	3 cut(s)	681, 725, 1007
Hpy188III	TCNNGA	4 cut(s)	55, 65, 80, 747
Hpy8I	GTNNAC	4 cut(s)	74, 814, 855, 997
HpyAV	CCTTC	1 cut(s)	281
HpyCH4III	ACNGT	2 cut(s)	71, 859
HpyCH4IV	ACGT	2 cut(s)	851, 986
HpyCH4V	TGCA	7 cut(s)	74, 313, 623, 730, 776, 919, 1019
HpyF10VI	GCNNNNNNNGC	2 cut(s)	157, 1016
HpyF3I	CTNAG	1 cut(s)	680
HpySE526I	ACGT	2 cut(s)	851, 986
Hsp92II	CATG	4 cut(s)	263, 355, 616, 923
KspAI	GTTAAC	1 cut(s)	814
Kzo9I	GATC	2 cut(s)	57, 526
LguI	GCTCTTC	1 cut(s)	9
LmnI	GCTCC	3 cut(s)	167, 671, 767
LweI	GCATC	6 cut(s)	550, 632, 934, 962, 1006, 1012
MaeI	CTAG	3 cut(s)	254, 573, 795
MaeII	ACGT	2 cut(s)	851, 986
MalI	GATC	2 cut(s)	59, 528
MboI	GATC	2 cut(s)	57, 526
MboII	GAAGA	8 cut(s)	26, 43, 377, 386, 444, 595, 906, 1025
MhlI	GDGCHC	2 cut(s)	76, 162
MlsI	TGGCCA	1 cut(s)	229
MluCI	AATT	9 cut(s)	96, 233, 315, 437, 499, 589, 758, 823, 837
MluNI	TGGCCA	1 cut(s)	229
MlyI	GAGTC	1 cut(s)	149
MmeI	TCCRAC	1 cut(s)	1007
Mox20I	TGGCCA	1 cut(s)	229
MscI	TGGCCA	1 cut(s)	229
MseI	TTAA	3 cut(s)	153, 813, 990
Msp20I	TGGCCA	1 cut(s)	229
MspA1I	CMGCKG	1 cut(s)	165
MspCI	CTTAAG	1 cut(s)	152
Mva1269I	GAATGC	1 cut(s)	732
MwoI	GCNNNNNNNGC	2 cut(s)	157, 1016
NcoI	CCATGG	2 cut(s)	259, 351
NdeII	GATC	2 cut(s)	57, 526
NlaIII	CATG	4 cut(s)	263, 355, 616, 923
NlaIV	GGNNCC	3 cut(s)	159, 411, 769
NspI	RCATGY	1 cut(s)	616
PaeI	GCATGC	1 cut(s)	616
PciSI	GCTCTTC	1 cut(s)	9
PctI	GAATGC	1 cut(s)	732
PkrI	GCNGC	1 cut(s)	34
PleI	GAGTC	1 cut(s)	148
PpsI	GAGTC	1 cut(s)	148
Psp1406I	AACGTT	1 cut(s)	986
PspFI	CCCAGC	2 cut(s)	161, 830
PspN4I	GGNNCC	3 cut(s)	159, 411, 769
PsrI	GAACNNNNNNTAC	2 cut(s)	559, 591
RsaI	GTAC	1 cut(s)	568
RsaNI	GTAC	1 cut(s)	567
SapI	GCTCTTC	1 cut(s)	9
SaqAI	TTAA	3 cut(s)	153, 813, 990
SatI	GCNGC	1 cut(s)	33
Sau3AI	GATC	2 cut(s)	57, 526
SchI	GAGTC	1 cut(s)	149
SduI	GDGCHC	2 cut(s)	76, 162
SfaNI	GCATC	6 cut(s)	550, 632, 934, 962, 1006, 1012
SfcI	CTRYAG	1 cut(s)	818
SmlI	CTYRAG	1 cut(s)	152
SmoI	CTYRAG	1 cut(s)	152
SphI	GCATGC	1 cut(s)	616
Sse9I	AATT	9 cut(s)	96, 233, 315, 437, 499, 589, 758, 823, 837
SsiI	CCGC	3 cut(s)	33, 165, 600
SspI	AATATT	1 cut(s)	399
SspMI	CTAG	3 cut(s)	254, 573, 795
StyI	CCWWGG	2 cut(s)	259, 351
TaaI	ACNGT	2 cut(s)	71, 859
TaiI	ACGT	2 cut(s)	854, 989
TaqI	TCGA	2 cut(s)	79, 861
TasI	AATT	9 cut(s)	96, 233, 315, 437, 499, 589, 758, 823, 837
TauI	GCSGC	1 cut(s)	35
Tru1I	TTAA	3 cut(s)	153, 813, 990
Tru9I	TTAA	3 cut(s)	153, 813, 990
TscAI	CASTG	2 cut(s)	76, 862
TspDTI	ATGAA	2 cut(s)	131, 501
TspRI	CASTG	2 cut(s)	76, 862
Vha464I	CTTAAG	1 cut(s)	152
VneI	GTGCAC	1 cut(s)	72
XapI	RAATTY	6 cut(s)	96, 233, 315, 499, 823, 837
XceI	RCATGY	1 cut(s)	616
XspI	CTAG	3 cut(s)	254, 573, 795

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.