Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0004836

Physical Location & Seq

Genomic Coordinates Reverse (-)

15290394 .. 15292268

Gene Structure 1875 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG170900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGGGAGAAACAGAAGAGCCTTCTCCTTTTGCCGCCAAATCTCCAAGCTTCTTCAAGATCGTTCTTGACAGTGCACTTCGAGATGGAAAGATTGAAATTCCAAAGGCATTTGTGATGAAGCATGGAAATTGTTTGGCAGAGTCAGTATTGCTTAAGGTTCCTAGCAGAGCAGAATGGCGAATAGGATTGACAAGGTGTGATGGTGAGGTTTGGTTAGAAAAGGGCTGGCCAGAATTCGCAAAGTTTTACTTCCTAGACCATGGATACTTATTAGTGTTCAGTTGTGAGGGTGATTATTCCAGTTTCCAAGTGCAAATTTTTACTAGGAATACTATGGAGATAGATTATCCCACGAATTCAAGCCTTGGCGAGGGGGAAGAACTTGAAGATGATGATGTTTCTGTTGAAATATTGGATGTGGTTCCCTCAAAGAAAAGAGGGAGAAGAGAATTGGCAAGCCTTTGGCCTCATAAGACGATGAGGACAAAATCAGGTGATGAAGCTGAAGTGAATTCCTACCCCAGAGGTAAAACTAAAGATCAAGGAGTGAAGCATCAAAGAGAAAAAAGAAGTTATGGTACTCCTAGTTCCTTAAAGAATTGTCAAGCGGAGGGGGGAAGCATGCCTACTGCATCAATATCTTTAGAGGCTAATGAGCATGATGTCGATACAAGAGATGGAGCGTTTCTGAGAGCTACAAGTTTCAAGTATAGTAATCCATATCTTGTAGTCAGAATGCAAAAATCATACCTATCAAGATATTTGAAATTACAAGGAGCCTTTGCAAAAGAATGTATTTGTGCTAGAGGTGTTCGTATTGTTAACCTACAGAATTCGGCTGGGAGAATTTGGCCTGCTACGTTCACTGTCGAGGTATGGAGTGAGGGAAAGCAACGACAAGGAAGAGTATCTTGGAAATCATTTGTGCATGACAATCATCTCAAAGTAGGGGATGCCTGTGTGTTTGAGCTGAAAAAGGGATGCGAAGTTCCAACGTTTAAAGTTCACATATTCCGAGCTGAAGATGTAGATGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

345

Amino Acids

39.0

Weight (kDa)

7.58

Isoelectric Point (pI)

37.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	18 - 109	1.3e-11	B3 DNA binding domain
B3	PF02362	252 - 340	7.5e-11	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004836)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g13840 FvH4_1g14720 FvH4_2g29240 FvH4_2g29322 FvH4_2g29350 FvH4_3g34770 FvH4_7g25080
malus_domestica	MD05G1037200.v1.1
prunus_persica	Prupe.7G143200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0103581 RchiOBHm_Chr5g0062511
rosa_laevigata	RLG00000017246 RLG00000035562
rosa_multiflora	Rmu_co8088552.1_g000001 Rmu_sc0001530.1_g000008 Rmu_sc0001852.1_g000021 Rmu_sc0004988.1_g000026
rosa_roxburghii	Rroxscaffold_1G00018100 Rroxscaffold_2G00139510
rosa_rugosa	Rorug02G0115900 Rorug05G0350300 Rorug05G0350300
rosa_samantha	Rh2AG164200 Rh2BG171400 Rh2CG170900 Rh2DG169500 Rh5AG410300 Rh5BG424300 Rh5DG438600
rosa_wichuraiana	Rw2G012910 Rw5G038630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	33, 608
AclI	AACGTT	1 cut(s)	995
AcoI	YGGCCR	1 cut(s)	227
AcsI	RAATTY	7 cut(s)	96, 233, 315, 355, 511, 832, 846
AcuI	CTGAAG	1 cut(s)	525
AfaI	GTAC	1 cut(s)	580
AfiI	CCNNNNNNNGG	1 cut(s)	370
AflII	CTTAAG	1 cut(s)	152
AgsI	TTSAA	7 cut(s)	55, 95, 360, 386, 407, 706, 766
AjuI	GAANNNNNNNTTGG	2 cut(s)	895, 927
AloI	GAACNNNNNNTCC	2 cut(s)	972, 1004
AluBI	AGCT	5 cut(s)	48, 503, 695, 970, 1019
AluI	AGCT	5 cut(s)	48, 503, 695, 970, 1019
Alw21I	GWGCWC	1 cut(s)	76
Alw44I	GTGCAC	1 cut(s)	72
AoxI	GGCC	3 cut(s)	227, 464, 851
ApaLI	GTGCAC	1 cut(s)	72
ApoI	RAATTY	7 cut(s)	96, 233, 315, 355, 511, 832, 846
AsuHPI	GGTGA	3 cut(s)	215, 302, 506
BaeGI	GKGCMC	1 cut(s)	76
BalI	TGGCCA	1 cut(s)	229
BarI	GAAGNNNNNNTAC	4 cut(s)	562, 594, 610, 642
Bbv12I	GWGCWC	1 cut(s)	76
BccI	CCATC	3 cut(s)	77, 194, 671
BciVI	GTATCC	1 cut(s)	257
BfaI	CTAG	5 cut(s)	162, 254, 324, 585, 804
BfmI	CTRYAG	1 cut(s)	827
BfrI	CTTAAG	1 cut(s)	152
BfuI	GTATCC	1 cut(s)	257
BisI	GCNGC	1 cut(s)	33
BlsI	GCNGC	1 cut(s)	34
BmiI	GGNNCC	3 cut(s)	159, 423, 778
BmsI	GCATC	5 cut(s)	562, 641, 943, 971, 1021
BsaJI	CCNNGG	2 cut(s)	259, 364
Bsc4I	CCNNNNNNNGG	1 cut(s)	370
Bse1I	ACTGG	1 cut(s)	300
BseDI	CCNNGG	2 cut(s)	259, 364
BseGI	GGATG	3 cut(s)	421, 958, 986
BseLI	CCNNNNNNNGG	1 cut(s)	370
BseMII	CTCAG	1 cut(s)	680
BseNI	ACTGG	1 cut(s)	300
BseSI	GKGCMC	1 cut(s)	76
BseYI	CCCAGC	1 cut(s)	839
BshFI	GGCC	3 cut(s)	229, 466, 853
BsiHKAI	GWGCWC	1 cut(s)	76
BslI	CCNNNNNNNGG	1 cut(s)	370
BsmI	GAATGC	1 cut(s)	741
BsnI	GGCC	3 cut(s)	229, 466, 853
Bsp1286I	GDGCHC	1 cut(s)	76
Bsp143I	GATC	2 cut(s)	57, 538
Bsp19I	CCATGG	1 cut(s)	259
BspACI	CCGC	2 cut(s)	33, 608
BspANI	GGCC	3 cut(s)	229, 466, 853
BspCNI	CTCAG	1 cut(s)	681
BspLI	GGNNCC	3 cut(s)	159, 423, 778
BspQI	GCTCTTC	1 cut(s)	9
BspTI	CTTAAG	1 cut(s)	152
BsrI	ACTGG	1 cut(s)	300
BssECI	CCNNGG	2 cut(s)	259, 364
BssMI	GATC	2 cut(s)	57, 538
BssT1I	CCWWGG	2 cut(s)	259, 364
Bst4CI	ACNGT	2 cut(s)	71, 868
Bst6I	CTCTTC	3 cut(s)	9, 439, 898
BstAFI	CTTAAG	1 cut(s)	152
BstC8I	GCNNGC	4 cut(s)	227, 457, 623, 855
BstDEI	CTNAG	1 cut(s)	689
BstDSI	CCRYGG	1 cut(s)	259
BstENI	CCTNNNNNAGG	1 cut(s)	368
BstF5I	GGATG	3 cut(s)	421, 958, 986
BstKTI	GATC	2 cut(s)	60, 541
BstMBI	GATC	2 cut(s)	57, 538
BstNSI	RCATGY	1 cut(s)	625
BstSFI	CTRYAG	1 cut(s)	827
BstSLI	GKGCMC	1 cut(s)	76
BsuI	GTATCC	1 cut(s)	257
BsuRI	GGCC	3 cut(s)	229, 466, 853
BtgI	CCRYGG	1 cut(s)	259
BtsCI	GGATG	3 cut(s)	421, 958, 986
BtsIMutI	CAGTG	2 cut(s)	76, 864
Cac8I	GCNNGC	4 cut(s)	227, 457, 623, 855
Csp6I	GTAC	1 cut(s)	579
CviAII	CATG	5 cut(s)	122, 260, 622, 659, 929
CviQI	GTAC	1 cut(s)	579
DdeI	CTNAG	1 cut(s)	689
DpnI	GATC	2 cut(s)	59, 540
DpnII	GATC	2 cut(s)	57, 538
DraI	TTTAAA	1 cut(s)	1000
EaeI	YGGCCR	1 cut(s)	227
Eam1104I	CTCTTC	3 cut(s)	9, 439, 898
EarI	CTCTTC	3 cut(s)	9, 439, 898
Eco130I	CCWWGG	2 cut(s)	259, 364
Eco57I	CTGAAG	1 cut(s)	525
EcoNI	CCTNNNNNAGG	1 cut(s)	368
EcoRI	GAATTC	4 cut(s)	233, 355, 511, 832
EcoT14I	CCWWGG	2 cut(s)	259, 364
ErhI	CCWWGG	2 cut(s)	259, 364
FaeI	CATG	5 cut(s)	125, 263, 625, 662, 932
FalI	AAGNNNNNCTT	4 cut(s)	233, 265, 895, 927
FatI	CATG	5 cut(s)	121, 259, 621, 658, 928
Fnu4HI	GCNGC	1 cut(s)	33
FokI	GGATG	3 cut(s)	428, 965, 993
Fsp4HI	GCNGC	1 cut(s)	33
FspBI	CTAG	5 cut(s)	162, 254, 324, 585, 804
GluI	GCNGC	1 cut(s)	33
GsaI	CCCAGC	1 cut(s)	843
HaeIII	GGCC	3 cut(s)	229, 466, 853
Hin1II	CATG	5 cut(s)	125, 263, 625, 662, 932
HincII	GTYRAC	1 cut(s)	823
HindII	GTYRAC	1 cut(s)	823
HindIII	AAGCTT	1 cut(s)	46
HinfI	GANTC	1 cut(s)	140
HpaI	GTTAAC	1 cut(s)	823
HphI	GGTGA	3 cut(s)	215, 302, 506
Hpy166II	GTNNAC	4 cut(s)	74, 823, 864, 1006
Hpy188I	TCNGA	3 cut(s)	690, 734, 1016
Hpy188III	TCNNGA	4 cut(s)	55, 65, 80, 756
Hpy8I	GTNNAC	4 cut(s)	74, 823, 864, 1006
HpyAV	CCTTC	1 cut(s)	30
HpyCH4III	ACNGT	2 cut(s)	71, 868
HpyCH4IV	ACGT	2 cut(s)	860, 995
HpyCH4V	TGCA	6 cut(s)	74, 313, 632, 739, 785, 928
HpyF3I	CTNAG	1 cut(s)	689
HpySE526I	ACGT	2 cut(s)	860, 995
Hsp92II	CATG	5 cut(s)	125, 263, 625, 662, 932
KspAI	GTTAAC	1 cut(s)	823
Kzo9I	GATC	2 cut(s)	57, 538
LguI	GCTCTTC	1 cut(s)	9
LmnI	GCTCC	2 cut(s)	680, 776
LpnPI	CCDG	8 cut(s)	211, 243, 313, 477, 535, 825, 867, 970
LweI	GCATC	5 cut(s)	562, 641, 943, 971, 1021
MaeI	CTAG	5 cut(s)	162, 254, 324, 585, 804
MaeII	ACGT	2 cut(s)	860, 995
MalI	GATC	2 cut(s)	59, 540
MboI	GATC	2 cut(s)	57, 538
MboII	GAAGA	7 cut(s)	26, 43, 389, 398, 456, 915, 1034
MhlI	GDGCHC	1 cut(s)	76
MlsI	TGGCCA	1 cut(s)	229
MluNI	TGGCCA	1 cut(s)	229
MlyI	GAGTC	1 cut(s)	149
MmeI	TCCRAC	1 cut(s)	1016
Mox20I	TGGCCA	1 cut(s)	229
MscI	TGGCCA	1 cut(s)	229
MseI	TTAA	4 cut(s)	153, 593, 822, 999
Msp20I	TGGCCA	1 cut(s)	229
MspCI	CTTAAG	1 cut(s)	152
Mva1269I	GAATGC	1 cut(s)	741
NcoI	CCATGG	1 cut(s)	259
NdeII	GATC	2 cut(s)	57, 538
NlaIII	CATG	5 cut(s)	125, 263, 625, 662, 932
NlaIV	GGNNCC	3 cut(s)	159, 423, 778
NspI	RCATGY	1 cut(s)	625
PaeI	GCATGC	1 cut(s)	625
PciSI	GCTCTTC	1 cut(s)	9
PctI	GAATGC	1 cut(s)	741
PkrI	GCNGC	1 cut(s)	34
PleI	GAGTC	1 cut(s)	148
PpsI	GAGTC	1 cut(s)	148
Psp1406I	AACGTT	1 cut(s)	995
PspFI	CCCAGC	1 cut(s)	839
PspN4I	GGNNCC	3 cut(s)	159, 423, 778
PsrI	GAACNNNNNNTAC	2 cut(s)	571, 603
RsaI	GTAC	1 cut(s)	580
RsaNI	GTAC	1 cut(s)	579
SapI	GCTCTTC	1 cut(s)	9
SaqAI	TTAA	4 cut(s)	153, 593, 822, 999
SatI	GCNGC	1 cut(s)	33
Sau3AI	GATC	2 cut(s)	57, 538
SchI	GAGTC	1 cut(s)	149
SduI	GDGCHC	1 cut(s)	76
SfaNI	GCATC	5 cut(s)	562, 641, 943, 971, 1021
SfcI	CTRYAG	1 cut(s)	827
SmlI	CTYRAG	1 cut(s)	152
SmoI	CTYRAG	1 cut(s)	152
SphI	GCATGC	1 cut(s)	625
SsiI	CCGC	2 cut(s)	33, 608
SspI	AATATT	1 cut(s)	411
SspMI	CTAG	5 cut(s)	162, 254, 324, 585, 804
StyI	CCWWGG	2 cut(s)	259, 364
TaaI	ACNGT	2 cut(s)	71, 868
TaiI	ACGT	2 cut(s)	863, 998
TaqI	TCGA	3 cut(s)	79, 666, 870
TauI	GCSGC	1 cut(s)	35
Tru1I	TTAA	4 cut(s)	153, 593, 822, 999
Tru9I	TTAA	4 cut(s)	153, 593, 822, 999
TscAI	CASTG	2 cut(s)	76, 871
TspDTI	ATGAA	2 cut(s)	131, 513
TspRI	CASTG	2 cut(s)	76, 871
Vha464I	CTTAAG	1 cut(s)	152
VneI	GTGCAC	1 cut(s)	72
XagI	CCTNNNNNAGG	1 cut(s)	368
XapI	RAATTY	7 cut(s)	96, 233, 315, 355, 511, 832, 846
XceI	RCATGY	1 cut(s)	625
XspI	CTAG	5 cut(s)	162, 254, 324, 585, 804

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.