Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0004836

Physical Location & Seq

Genomic Coordinates Forward (+)

22772996 .. 22774509

Gene Structure 1514 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g29322.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGGCTTCTTCAAGCAGGCGTGACCGCAAAGGTGTAACATTTCCAGTGAGAACTCCCAGCTTCTTCAAGGTTGTTCTTGATGAGGCTCTTCAAAATGGGAGACTAGCTGACTTACGTGCACATCTTAATTGTTACTTCCTGGAAATTGAAGGGTGTGTTGCAGCGTTGTTCAAAACATGCCTAGCAGACAAACTACTCGTCAAGGTTCCAAATGGAGAGCCTATGGTTAGAGAAGGGATGGCTGGAATTTGCAAACTTCTATTCCTAGAAATTGGCTGCTTCTTGGTTTTCAGCTATGAGGGGATTCATTCCTGTTTCAATGTTCGTATCTTCAAGAAGAACAGTTTGGAGGTAGACAATCCATCCAAATCAAACATTCATTGGGAAGCCAATTTCTGCAGAGCATATGATGAAGCATTTTCAAGAGCTAATAGATTCCAATCCGACAGTCCATTTCTTGCTCTCAAATTGCAGTCCTCATATATTGCCAATCCTTTGAAAATTCAAGAGTCCTTTGTTCATCAATTCATCTTTCAAGGACACCACAGTCGCAATGTAAATATACATATTCCAAACGGGGGAATTTATTGTGCTAAATGCACCGTCACTCCGTCAGCCGGTGTGGCAAACAAGGCTATGCAAGAATCCATGGTGGTTGGACAAAATCTGCAAGAGATAATGATTTGCAAGCAGGGGATGCTATCGTGCTCGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

239

Amino Acids

26.61

Weight (kDa)

8.76

Isoelectric Point (pI)

46.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004836)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g13840 FvH4_1g14720 FvH4_2g29240 FvH4_2g29322 FvH4_2g29350 FvH4_3g34770 FvH4_7g25080
malus_domestica	MD05G1037200.v1.1
prunus_persica	Prupe.7G143200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0103581 RchiOBHm_Chr5g0062511
rosa_laevigata	RLG00000017246 RLG00000035562
rosa_multiflora	Rmu_co8088552.1_g000001 Rmu_sc0001530.1_g000008 Rmu_sc0001852.1_g000021 Rmu_sc0004988.1_g000026
rosa_roxburghii	Rroxscaffold_1G00018100 Rroxscaffold_2G00139510
rosa_rugosa	Rorug02G0115900 Rorug05G0350300 Rorug05G0350300
rosa_samantha	Rh2AG164200 Rh2BG171400 Rh2CG170900 Rh2DG169500 Rh5AG410300 Rh5BG424300 Rh5DG438600
rosa_wichuraiana	Rw2G012910 Rw5G038630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	546
AccI	GTMKAC	1 cut(s)	354
AciI	CCGC	1 cut(s)	25
AcsI	RAATTY	3 cut(s)	246, 501, 582
AfiI	CCNNNNNNNGG	2 cut(s)	578, 617
AjnI	CCWGG	1 cut(s)	138
AjuI	GAANNNNNNNTTGG	2 cut(s)	329, 361
AluBI	AGCT	5 cut(s)	60, 107, 294, 428, 714
AluI	AGCT	5 cut(s)	60, 107, 294, 428, 714
Alw21I	GWGCWC	2 cut(s)	121, 710
Alw26I	GTCTC	1 cut(s)	94
Alw44I	GTGCAC	1 cut(s)	117
Ama87I	CYCGRG	1 cut(s)	709
ApaLI	GTGCAC	1 cut(s)	117
ApeKI	GCWGC	2 cut(s)	161, 276
ApoI	RAATTY	3 cut(s)	246, 501, 582
ArsI	GACNNNNNNTTYG	2 cut(s)	183, 215
AvaI	CYCGRG	1 cut(s)	709
BaeGI	GKGCMC	1 cut(s)	121
Bbv12I	GWGCWC	2 cut(s)	121, 710
BbvI	GCAGC	2 cut(s)	173, 263
BccI	CCATC	2 cut(s)	232, 370
BciT130I	CCWGG	1 cut(s)	140
BcoDI	GTCTC	1 cut(s)	94
BfaI	CTAG	3 cut(s)	104, 182, 266
BfmI	CTRYAG	1 cut(s)	397
BglI	GCCNNNNNGGC	1 cut(s)	623
BisI	GCNGC	2 cut(s)	162, 277
BlsI	GCNGC	2 cut(s)	163, 278
Bme1390I	CCNGG	1 cut(s)	140
BmeT110I	CYCGRG	1 cut(s)	709
BmiI	GGNNCC	1 cut(s)	207
BmrFI	CCNGG	1 cut(s)	140
BmsI	GCATC	1 cut(s)	687
BsaAI	YACGTR	1 cut(s)	116
BsaBI	GATNNNNATC	1 cut(s)	439
BsaJI	CCNNGG	1 cut(s)	648
BsaXI	ACNNNNNCTCC	2 cut(s)	592, 622
Bsc4I	CCNNNNNNNGG	2 cut(s)	578, 617
Bse118I	RCCGGY	1 cut(s)	617
Bse1I	ACTGG	1 cut(s)	44
Bse3DI	GCAATG	1 cut(s)	559
Bse8I	GATNNNNATC	1 cut(s)	439
BseBI	CCWGG	1 cut(s)	140
BseDI	CCNNGG	1 cut(s)	648
BseGI	GGATG	3 cut(s)	243, 362, 702
BseJI	GATNNNNATC	1 cut(s)	439
BseLI	CCNNNNNNNGG	2 cut(s)	578, 617
BseMI	GCAATG	1 cut(s)	559
BseNI	ACTGG	1 cut(s)	44
BseSI	GKGCMC	1 cut(s)	121
BseXI	GCAGC	2 cut(s)	173, 263
BseYI	CCCAGC	1 cut(s)	56
BsiHKAI	GWGCWC	2 cut(s)	121, 710
BsiHKCI	CYCGRG	1 cut(s)	709
BsiSI	CCGG	1 cut(s)	618
BslI	CCNNNNNNNGG	2 cut(s)	578, 617
BsmAI	GTCTC	1 cut(s)	94
BsoBI	CYCGRG	1 cut(s)	709
Bsp1286I	GDGCHC	2 cut(s)	121, 710
Bsp19I	CCATGG	1 cut(s)	648
BspACI	CCGC	1 cut(s)	25
BspLI	GGNNCC	1 cut(s)	207
BspMAI	CTGCAG	1 cut(s)	401
BspQI	GCTCTTC	1 cut(s)	93
BsrDI	GCAATG	1 cut(s)	559
BsrFI	RCCGGY	1 cut(s)	617
BsrI	ACTGG	1 cut(s)	44
BssAI	RCCGGY	1 cut(s)	617
BssECI	CCNNGG	1 cut(s)	648
BssT1I	CCWWGG	1 cut(s)	648
Bst2UI	CCWGG	1 cut(s)	140
Bst4CI	ACNGT	4 cut(s)	344, 449, 548, 604
Bst6I	CTCTTC	1 cut(s)	93
BstAPI	GCANNNNNTGC	1 cut(s)	697
BstBAI	YACGTR	1 cut(s)	116
BstC8I	GCNNGC	2 cut(s)	17, 689
BstDSI	CCRYGG	1 cut(s)	648
BstF5I	GGATG	3 cut(s)	243, 362, 702
BstMAI	GTCTC	1 cut(s)	94
BstMWI	GCNNNNNNNGC	3 cut(s)	623, 632, 697
BstNI	CCWGG	1 cut(s)	140
BstNSI	RCATGY	1 cut(s)	180
BstSCI	CCNGG	1 cut(s)	138
BstSFI	CTRYAG	1 cut(s)	397
BstSLI	GKGCMC	1 cut(s)	121
BstV1I	GCAGC	2 cut(s)	173, 263
BtgI	CCRYGG	1 cut(s)	648
BtsCI	GGATG	3 cut(s)	243, 362, 702
BtsIMutI	CAGTG	1 cut(s)	51
Cac8I	GCNNGC	2 cut(s)	17, 689
Cfr10I	RCCGGY	1 cut(s)	617
CviAII	CATG	2 cut(s)	177, 649
DrdI	GACNNNNNNGTC	1 cut(s)	546
DseDI	GACNNNNNNGTC	1 cut(s)	546
Eam1104I	CTCTTC	1 cut(s)	93
EarI	CTCTTC	1 cut(s)	93
Eco130I	CCWWGG	1 cut(s)	648
Eco88I	CYCGRG	1 cut(s)	709
EcoRII	CCWGG	1 cut(s)	138
EcoT14I	CCWWGG	1 cut(s)	648
ErhI	CCWWGG	1 cut(s)	648
FaeI	CATG	2 cut(s)	180, 652
FatI	CATG	2 cut(s)	176, 648
FauNDI	CATATG	1 cut(s)	406
FblI	GTMKAC	1 cut(s)	354
Fnu4HI	GCNGC	2 cut(s)	162, 277
FokI	GGATG	3 cut(s)	250, 349, 709
Fsp4HI	GCNGC	2 cut(s)	162, 277
FspBI	CTAG	3 cut(s)	104, 182, 266
GluI	GCNGC	2 cut(s)	162, 277
GsaI	CCCAGC	1 cut(s)	60
HapII	CCGG	1 cut(s)	618
Hin1II	CATG	2 cut(s)	180, 652
HinfI	GANTC	4 cut(s)	304, 435, 509, 644
HpaII	CCGG	1 cut(s)	618
Hpy166II	GTNNAC	2 cut(s)	119, 355
Hpy188I	TCNGA	1 cut(s)	445
Hpy188III	TCNNGA	4 cut(s)	77, 334, 423, 506
Hpy8I	GTNNAC	2 cut(s)	119, 355
HpyAV	CCTTC	2 cut(s)	143, 227
HpyCH4III	ACNGT	4 cut(s)	344, 449, 548, 604
HpyCH4IV	ACGT	1 cut(s)	115
HpyCH4V	TGCA	9 cut(s)	119, 161, 252, 399, 472, 600, 640, 670, 687
HpyF10VI	GCNNNNNNNGC	3 cut(s)	623, 632, 697
HpySE526I	ACGT	1 cut(s)	115
Hsp92II	CATG	2 cut(s)	180, 652
LguI	GCTCTTC	1 cut(s)	93
LpnPI	CCDG	8 cut(s)	57, 70, 125, 152, 228, 325, 631, 677
Lsp1109I	GCAGC	2 cut(s)	173, 263
LweI	GCATC	1 cut(s)	687
MaeI	CTAG	3 cut(s)	104, 182, 266
MaeII	ACGT	1 cut(s)	115
MaeIII	GTNAC	4 cut(s)	20, 34, 131, 604
MboII	GAAGA	4 cut(s)	55, 80, 322, 349
MhlI	GDGCHC	2 cut(s)	121, 710
MluCI	AATT	9 cut(s)	127, 144, 246, 270, 391, 467, 501, 524, 582
MlyI	GAGTC	1 cut(s)	518
MmeI	TCCRAC	2 cut(s)	468, 637
MnlI	CCTC	4 cut(s)	76, 292, 343, 487
MseI	TTAA	1 cut(s)	126
MspI	CCGG	1 cut(s)	618
MspR9I	CCNGG	1 cut(s)	140
MvaI	CCWGG	1 cut(s)	140
MwoI	GCNNNNNNNGC	3 cut(s)	623, 632, 697
NcoI	CCATGG	1 cut(s)	648
NdeI	CATATG	1 cut(s)	406
NlaIII	CATG	2 cut(s)	180, 652
NlaIV	GGNNCC	1 cut(s)	207
NmuCI	GTSAC	2 cut(s)	20, 604
NspI	RCATGY	1 cut(s)	180
PaeR7I	CTCGAG	1 cut(s)	709
PciSI	GCTCTTC	1 cut(s)	93
PfeI	GAWTC	3 cut(s)	304, 435, 644
PfoI	TCCNGGA	1 cut(s)	138
PkrI	GCNGC	2 cut(s)	163, 278
PleI	GAGTC	1 cut(s)	517
PpsI	GAGTC	1 cut(s)	517
Ppu21I	YACGTR	1 cut(s)	116
Psp6I	CCWGG	1 cut(s)	138
PspFI	CCCAGC	1 cut(s)	56
PspGI	CCWGG	1 cut(s)	138
PspN4I	GGNNCC	1 cut(s)	207
PspXI	VCTCGAGB	1 cut(s)	709
PstI	CTGCAG	1 cut(s)	401
SapI	GCTCTTC	1 cut(s)	93
SaqAI	TTAA	1 cut(s)	126
SatI	GCNGC	2 cut(s)	162, 277
SchI	GAGTC	1 cut(s)	518
ScrFI	CCNGG	1 cut(s)	140
SduI	GDGCHC	2 cut(s)	121, 710
SfaNI	GCATC	1 cut(s)	687
SfcI	CTRYAG	1 cut(s)	397
Sfr274I	CTCGAG	1 cut(s)	709
SlaI	CTCGAG	1 cut(s)	709
SmlI	CTYRAG	1 cut(s)	709
SmoI	CTYRAG	1 cut(s)	709
Sse9I	AATT	9 cut(s)	127, 144, 246, 270, 391, 467, 501, 524, 582
SsiI	CCGC	1 cut(s)	25
SspMI	CTAG	3 cut(s)	104, 182, 266
StyD4I	CCNGG	1 cut(s)	138
StyI	CCWWGG	1 cut(s)	648
TaaI	ACNGT	4 cut(s)	344, 449, 548, 604
TaiI	ACGT	1 cut(s)	118
TaqI	TCGA	1 cut(s)	710
TasI	AATT	9 cut(s)	127, 144, 246, 270, 391, 467, 501, 524, 582
TfiI	GAWTC	3 cut(s)	304, 435, 644
Tru1I	TTAA	1 cut(s)	126
Tru9I	TTAA	1 cut(s)	126
TscAI	CASTG	1 cut(s)	51
TseFI	GTSAC	2 cut(s)	20, 604
TseI	GCWGC	2 cut(s)	161, 276
Tsp45I	GTSAC	2 cut(s)	20, 604
TspDTI	ATGAA	5 cut(s)	296, 368, 426, 509, 517
TspGWI	ACGGA	1 cut(s)	600
TspRI	CASTG	1 cut(s)	51
VneI	GTGCAC	1 cut(s)	117
XapI	RAATTY	3 cut(s)	246, 501, 582
XceI	RCATGY	1 cut(s)	180
XhoI	CTCGAG	1 cut(s)	709
XmiI	GTMKAC	1 cut(s)	354
XspI	CTAG	3 cut(s)	104, 182, 266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.