Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0004836

Physical Location & Seq

Genomic Coordinates Reverse (-)

14477226 .. 14478857

Gene Structure 1632 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017246

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGAGAGAAACAGAAGAGCCTTCTCCTTTTGCCGCCAAATCTCCAAGCTTCTTCAAGATTGTTCTTGACAGTGCACTTCGAGATGGAAAGATTTTTGTGGGTTACAGGAATACTGTGGAGATAGATTATCCCATGAATTCAAGCCTTGGCGAGGGGGAAGAACTTGAAGATGATGATGTTTCTGTTGAAATATTGGATGTGGTTCCCTCAAAGAAAAGAGGGAGAAGAGAATTGGCAAGCCTTTGGCCTCATAAGACGATGAGGACAAAATCAGGTGATGAAGCTGAAGTGAATTCCTACCCCAGAGCTAAAACTAAAGATCAAGGAGTGAAGCATCGAAGAGAAAAGAGAAGTTATGGTACTCCTAGTTCCTTAAAGAATTGTCAAGCGGAGGGGGGAAGCATACCTACTGCATCAACATCGTTAGAGGCTAATGAGCGTGATGTCGATACAAGAGATGGAGCGTTTCTCAGAGCTACAAGTTTCAAGTATAATAATCCACATCTTGTAGTCAGAATGCAAAAATCATACCTATCAAGATATTTGAAATTACAAGGAGCCTTTGCAAAAGAATGTGTTTGTGCTAGAGGTGTTCGTATTGTTAACCTACAGAATTCGGCTGGGAGAATTTGGCCTGCTACGTTCACTGTCGAGGTATGGAGTGAGGGAAAGCAACGACAAGGAAGAGTATCTTGGAAATCATTTGTGCATGACAATCATCTCAAAGTAGGGGATGCCTGTGTGTTTGAGCTGAAAAAGGGATGCGAAGTTCCAACGTTTAAAGTTCACATATTCCGAGCTGAAGATGCAGATGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

273

Amino Acids

30.67

Weight (kDa)

8.98

Isoelectric Point (pI)

38.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	181 - 267	6.6e-11	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004836)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g13840 FvH4_1g14720 FvH4_2g29240 FvH4_2g29322 FvH4_2g29350 FvH4_3g34770 FvH4_7g25080
malus_domestica	MD05G1037200.v1.1
prunus_persica	Prupe.7G143200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0103581 RchiOBHm_Chr5g0062511
rosa_laevigata	RLG00000017246 RLG00000035562
rosa_multiflora	Rmu_co8088552.1_g000001 Rmu_sc0001530.1_g000008 Rmu_sc0001852.1_g000021 Rmu_sc0004988.1_g000026
rosa_roxburghii	Rroxscaffold_1G00018100 Rroxscaffold_2G00139510
rosa_rugosa	Rorug02G0115900 Rorug05G0350300 Rorug05G0350300
rosa_samantha	Rh2AG164200 Rh2BG171400 Rh2CG170900 Rh2DG169500 Rh5AG410300 Rh5BG424300 Rh5DG438600
rosa_wichuraiana	Rw2G012910 Rw5G038630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	33, 389
AclI	AACGTT	1 cut(s)	776
AcsI	RAATTY	4 cut(s)	136, 292, 613, 627
AcuI	CTGAAG	1 cut(s)	306
AfaI	GTAC	1 cut(s)	361
AfiI	CCNNNNNNNGG	1 cut(s)	151
AgsI	TTSAA	6 cut(s)	55, 141, 167, 188, 487, 547
AjuI	GAANNNNNNNTTGG	2 cut(s)	676, 708
AloI	GAACNNNNNNTCC	2 cut(s)	753, 785
AluBI	AGCT	6 cut(s)	48, 284, 308, 476, 751, 800
AluI	AGCT	6 cut(s)	48, 284, 308, 476, 751, 800
Alw21I	GWGCWC	1 cut(s)	76
Alw44I	GTGCAC	1 cut(s)	72
AoxI	GGCC	2 cut(s)	245, 632
ApaLI	GTGCAC	1 cut(s)	72
ApoI	RAATTY	4 cut(s)	136, 292, 613, 627
AsuHPI	GGTGA	1 cut(s)	287
BaeGI	GKGCMC	1 cut(s)	76
BarI	GAAGNNNNNNTAC	4 cut(s)	343, 375, 391, 423
Bbv12I	GWGCWC	1 cut(s)	76
BccI	CCATC	2 cut(s)	77, 452
BcgI	CGANNNNNNTGC	2 cut(s)	402, 436
BfaI	CTAG	2 cut(s)	366, 585
BfmI	CTRYAG	1 cut(s)	608
BisI	GCNGC	1 cut(s)	33
BlsI	GCNGC	1 cut(s)	34
BmiI	GGNNCC	2 cut(s)	204, 559
BmsI	GCATC	5 cut(s)	343, 422, 724, 752, 796
BplI	GAGNNNNNCTC	2 cut(s)	453, 485
BsaJI	CCNNGG	1 cut(s)	145
Bsc4I	CCNNNNNNNGG	1 cut(s)	151
BseDI	CCNNGG	1 cut(s)	145
BseGI	GGATG	3 cut(s)	202, 739, 767
BseLI	CCNNNNNNNGG	1 cut(s)	151
BseMII	CTCAG	1 cut(s)	484
BseSI	GKGCMC	1 cut(s)	76
BseYI	CCCAGC	1 cut(s)	620
BshFI	GGCC	2 cut(s)	247, 634
BsiHKAI	GWGCWC	1 cut(s)	76
BslI	CCNNNNNNNGG	1 cut(s)	151
BsmI	GAATGC	1 cut(s)	522
BsnI	GGCC	2 cut(s)	247, 634
Bsp1286I	GDGCHC	1 cut(s)	76
Bsp143I	GATC	1 cut(s)	319
BspACI	CCGC	2 cut(s)	33, 389
BspANI	GGCC	2 cut(s)	247, 634
BspCNI	CTCAG	1 cut(s)	483
BspLI	GGNNCC	2 cut(s)	204, 559
BspQI	GCTCTTC	1 cut(s)	9
BssECI	CCNNGG	1 cut(s)	145
BssMI	GATC	1 cut(s)	319
BssT1I	CCWWGG	1 cut(s)	145
Bst4CI	ACNGT	3 cut(s)	71, 115, 649
Bst6I	CTCTTC	4 cut(s)	9, 220, 334, 679
BstC8I	GCNNGC	2 cut(s)	238, 636
BstDEI	CTNAG	1 cut(s)	470
BstENI	CCTNNNNNAGG	1 cut(s)	149
BstF5I	GGATG	3 cut(s)	202, 739, 767
BstKTI	GATC	1 cut(s)	322
BstMBI	GATC	1 cut(s)	319
BstMWI	GCNNNNNNNGC	1 cut(s)	806
BstSFI	CTRYAG	1 cut(s)	608
BstSLI	GKGCMC	1 cut(s)	76
BsuRI	GGCC	2 cut(s)	247, 634
BtsCI	GGATG	3 cut(s)	202, 739, 767
BtsIMutI	CAGTG	2 cut(s)	76, 645
Cac8I	GCNNGC	2 cut(s)	238, 636
Csp6I	GTAC	1 cut(s)	360
CviAII	CATG	2 cut(s)	133, 710
CviQI	GTAC	1 cut(s)	360
DdeI	CTNAG	1 cut(s)	470
DpnI	GATC	1 cut(s)	321
DpnII	GATC	1 cut(s)	319
DraI	TTTAAA	1 cut(s)	781
Eam1104I	CTCTTC	4 cut(s)	9, 220, 334, 679
EarI	CTCTTC	4 cut(s)	9, 220, 334, 679
Eco130I	CCWWGG	1 cut(s)	145
Eco57I	CTGAAG	1 cut(s)	306
EcoNI	CCTNNNNNAGG	1 cut(s)	149
EcoRI	GAATTC	3 cut(s)	136, 292, 613
EcoT14I	CCWWGG	1 cut(s)	145
ErhI	CCWWGG	1 cut(s)	145
FaeI	CATG	2 cut(s)	136, 713
FaiI	YATR	9 cut(s)	134, 252, 357, 404, 492, 529, 658, 711, 791
FalI	AAGNNNNNCTT	2 cut(s)	676, 708
FatI	CATG	2 cut(s)	132, 709
Fnu4HI	GCNGC	1 cut(s)	33
FokI	GGATG	3 cut(s)	209, 746, 774
Fsp4HI	GCNGC	1 cut(s)	33
FspBI	CTAG	2 cut(s)	366, 585
GluI	GCNGC	1 cut(s)	33
GsaI	CCCAGC	1 cut(s)	624
HaeIII	GGCC	2 cut(s)	247, 634
Hin1II	CATG	2 cut(s)	136, 713
HincII	GTYRAC	1 cut(s)	604
HindII	GTYRAC	1 cut(s)	604
HindIII	AAGCTT	1 cut(s)	46
HpaI	GTTAAC	1 cut(s)	604
HphI	GGTGA	1 cut(s)	287
Hpy166II	GTNNAC	4 cut(s)	74, 604, 645, 787
Hpy188I	TCNGA	3 cut(s)	473, 515, 797
Hpy188III	TCNNGA	4 cut(s)	55, 65, 80, 537
Hpy8I	GTNNAC	4 cut(s)	74, 604, 645, 787
HpyAV	CCTTC	1 cut(s)	30
HpyCH4III	ACNGT	3 cut(s)	71, 115, 649
HpyCH4IV	ACGT	2 cut(s)	641, 776
HpyCH4V	TGCA	6 cut(s)	74, 413, 520, 566, 709, 809
HpyF10VI	GCNNNNNNNGC	1 cut(s)	806
HpyF3I	CTNAG	1 cut(s)	470
HpySE526I	ACGT	2 cut(s)	641, 776
Hsp92II	CATG	2 cut(s)	136, 713
KspAI	GTTAAC	1 cut(s)	604
Kzo9I	GATC	1 cut(s)	319
LguI	GCTCTTC	1 cut(s)	9
LmnI	GCTCC	2 cut(s)	461, 557
LpnPI	CCDG	6 cut(s)	91, 258, 316, 606, 648, 751
LweI	GCATC	5 cut(s)	343, 422, 724, 752, 796
MaeI	CTAG	2 cut(s)	366, 585
MaeII	ACGT	2 cut(s)	641, 776
MaeIII	GTNAC	1 cut(s)	101
MalI	GATC	1 cut(s)	321
MboI	GATC	1 cut(s)	319
MboII	GAAGA	8 cut(s)	26, 43, 170, 179, 237, 351, 696, 815
MhlI	GDGCHC	1 cut(s)	76
MluCI	AATT	7 cut(s)	136, 230, 292, 379, 548, 613, 627
MmeI	TCCRAC	1 cut(s)	797
MseI	TTAA	3 cut(s)	374, 603, 780
Mva1269I	GAATGC	1 cut(s)	522
MwoI	GCNNNNNNNGC	1 cut(s)	806
NdeII	GATC	1 cut(s)	319
NlaIII	CATG	2 cut(s)	136, 713
NlaIV	GGNNCC	2 cut(s)	204, 559
PciSI	GCTCTTC	1 cut(s)	9
PctI	GAATGC	1 cut(s)	522
PkrI	GCNGC	1 cut(s)	34
Psp1406I	AACGTT	1 cut(s)	776
PspFI	CCCAGC	1 cut(s)	620
PspN4I	GGNNCC	2 cut(s)	204, 559
PsrI	GAACNNNNNNTAC	2 cut(s)	352, 384
RsaI	GTAC	1 cut(s)	361
RsaNI	GTAC	1 cut(s)	360
SapI	GCTCTTC	1 cut(s)	9
SaqAI	TTAA	3 cut(s)	374, 603, 780
SatI	GCNGC	1 cut(s)	33
Sau3AI	GATC	1 cut(s)	319
SduI	GDGCHC	1 cut(s)	76
SfaNI	GCATC	5 cut(s)	343, 422, 724, 752, 796
SfcI	CTRYAG	1 cut(s)	608
Sse9I	AATT	7 cut(s)	136, 230, 292, 379, 548, 613, 627
SsiI	CCGC	2 cut(s)	33, 389
SspI	AATATT	1 cut(s)	192
SspMI	CTAG	2 cut(s)	366, 585
StyI	CCWWGG	1 cut(s)	145
TaaI	ACNGT	3 cut(s)	71, 115, 649
TaiI	ACGT	2 cut(s)	644, 779
TaqI	TCGA	4 cut(s)	79, 337, 447, 651
TasI	AATT	7 cut(s)	136, 230, 292, 379, 548, 613, 627
TauI	GCSGC	1 cut(s)	35
Tru1I	TTAA	3 cut(s)	374, 603, 780
Tru9I	TTAA	3 cut(s)	374, 603, 780
TscAI	CASTG	2 cut(s)	76, 652
TspDTI	ATGAA	2 cut(s)	149, 294
TspRI	CASTG	2 cut(s)	76, 652
VneI	GTGCAC	1 cut(s)	72
XagI	CCTNNNNNAGG	1 cut(s)	149
XapI	RAATTY	4 cut(s)	136, 292, 613, 627
XspI	CTAG	2 cut(s)	366, 585

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.