Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0004836

Physical Location & Seq

Genomic Coordinates Reverse (-)

9857761 .. 9862316

Gene Structure 4556 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0115900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGAGAGCCACCCACCTACAAAGAGTTCTACTATGCAGCAAGGCGATGCAAATGAAAAAGGTTCTCAAAATGTTCAGCAAGATGGCAATGCAAATGATGAACATAGAATGCAGAATGCTCAGCAATGTGGCCATTCTAATGGACATAGTTCTGAAAATGTTCACGATGAGGAGCATCATGAGATTCCATCTCAACAATCACTTGTCAAAGCACCTTTTGTTTCATCGCAACCACTTCCATCACCTCTAAATTTCTCACAAGAAATTCCTCCAGTTCAAAGAAGTTCTCAACCTATTGGATCATTCTTAGCTTCCTTCTCCATGATGTACACTGCTCCTATAACAGGGAGGCTAAAGAAGCAAGTTGCATTCAAAAATCGTAAGAATTCTATGTCAACTGAGAATGCAAGCAAGCCTATTTGGAGACCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

143

Amino Acids

15.85

Weight (kDa)

7.06

Isoelectric Point (pI)

60.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004836)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g13840 FvH4_1g14720 FvH4_2g29240 FvH4_2g29322 FvH4_2g29350 FvH4_3g34770 FvH4_7g25080
malus_domestica	MD05G1037200.v1.1
prunus_persica	Prupe.7G143200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0103581 RchiOBHm_Chr5g0062511
rosa_laevigata	RLG00000017246 RLG00000035562
rosa_multiflora	Rmu_co8088552.1_g000001 Rmu_sc0001530.1_g000008 Rmu_sc0001852.1_g000021 Rmu_sc0004988.1_g000026
rosa_roxburghii	Rroxscaffold_1G00018100 Rroxscaffold_2G00139510
rosa_rugosa	Rorug02G0115900 Rorug05G0350300 Rorug05G0350300
rosa_samantha	Rh2AG164200 Rh2BG171400 Rh2CG170900 Rh2DG169500 Rh5AG410300 Rh5BG424300 Rh5DG438600
rosa_wichuraiana	Rw2G012910 Rw5G038630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	307
AcoI	YGGCCR	1 cut(s)	130
AcsI	RAATTY	3 cut(s)	250, 264, 385
AfaI	GTAC	1 cut(s)	329
AfiI	CCNNNNNNNGG	1 cut(s)	344
AgsI	TTSAA	2 cut(s)	278, 373
AluBI	AGCT	1 cut(s)	311
AluI	AGCT	1 cut(s)	311
Alw26I	GTCTC	1 cut(s)	418
AlwI	GGATC	1 cut(s)	307
AoxI	GGCC	1 cut(s)	130
ApeKI	GCWGC	1 cut(s)	37
ApoI	RAATTY	3 cut(s)	250, 264, 385
Asp700I	GAANNNNTTC	1 cut(s)	159
AsuHPI	GGTGA	1 cut(s)	234
BalI	TGGCCA	1 cut(s)	132
BbvI	GCAGC	1 cut(s)	49
BccI	CCATC	3 cut(s)	77, 196, 247
BcoDI	GTCTC	1 cut(s)	418
BisI	GCNGC	1 cut(s)	38
BlpI	GCTNAGC	1 cut(s)	120
BlsI	GCNGC	1 cut(s)	39
BmsI	GCATC	2 cut(s)	37, 184
BpmI	CTGGAG	1 cut(s)	255
Bpu1102I	GCTNAGC	1 cut(s)	120
BsaI	GGTCTC	1 cut(s)	418
Bsc4I	CCNNNNNNNGG	1 cut(s)	344
Bse1I	ACTGG	1 cut(s)	272
Bse3DI	GCAATG	2 cut(s)	94, 131
BseLI	CCNNNNNNNGG	1 cut(s)	344
BseMI	GCAATG	2 cut(s)	94, 131
BseMII	CTCAG	2 cut(s)	134, 390
BseNI	ACTGG	1 cut(s)	272
BseRI	GAGGAG	1 cut(s)	185
BseXI	GCAGC	1 cut(s)	49
BshFI	GGCC	1 cut(s)	132
BslI	CCNNNNNNNGG	1 cut(s)	344
BsmAI	GTCTC	1 cut(s)	418
BsmI	GAATGC	4 cut(s)	114, 121, 368, 409
BsnI	GGCC	1 cut(s)	132
Bso31I	GGTCTC	1 cut(s)	418
Bsp1407I	TGTACA	1 cut(s)	327
Bsp143I	GATC	1 cut(s)	299
Bsp1720I	GCTNAGC	1 cut(s)	120
BspANI	GGCC	1 cut(s)	132
BspCNI	CTCAG	2 cut(s)	133, 391
BspHI	TCATGA	1 cut(s)	178
BspPI	GGATC	1 cut(s)	307
BspTNI	GGTCTC	1 cut(s)	418
BsrDI	GCAATG	2 cut(s)	94, 131
BsrGI	TGTACA	1 cut(s)	327
BsrI	ACTGG	1 cut(s)	272
BssMI	GATC	1 cut(s)	299
BstAUI	TGTACA	1 cut(s)	327
BstC8I	GCNNGC	2 cut(s)	409, 413
BstDEI	CTNAG	3 cut(s)	120, 307, 399
BstENI	CCTNNNNNAGG	1 cut(s)	342
BstKTI	GATC	1 cut(s)	302
BstMAI	GTCTC	1 cut(s)	418
BstMBI	GATC	1 cut(s)	299
BstMWI	GCNNNNNNNGC	1 cut(s)	358
BstV1I	GCAGC	1 cut(s)	49
BstXI	CCANNNNNNTGG	1 cut(s)	140
BsuRI	GGCC	1 cut(s)	132
BtgZI	GCGATG	2 cut(s)	60, 210
BtsI	GCAGTG	1 cut(s)	330
BtsIMutI	CAGTG	1 cut(s)	330
Cac8I	GCNNGC	2 cut(s)	409, 413
CciI	TCATGA	1 cut(s)	178
Csp6I	GTAC	1 cut(s)	328
CviAII	CATG	2 cut(s)	179, 322
CviJI	RGCY	5 cut(s)	9, 132, 311, 352, 415
CviKI_1	RGCY	5 cut(s)	9, 132, 311, 352, 415
CviQI	GTAC	1 cut(s)	328
DdeI	CTNAG	3 cut(s)	120, 307, 399
DpnI	GATC	1 cut(s)	301
DpnII	GATC	1 cut(s)	299
EaeI	YGGCCR	1 cut(s)	130
Eco31I	GGTCTC	1 cut(s)	418
EcoNI	CCTNNNNNAGG	1 cut(s)	342
EcoRI	GAATTC	1 cut(s)	385
FaeI	CATG	2 cut(s)	182, 325
FaiI	YATR	7 cut(s)	35, 105, 147, 180, 323, 341, 392
FatI	CATG	2 cut(s)	178, 321
Fnu4HI	GCNGC	1 cut(s)	38
Fsp4HI	GCNGC	1 cut(s)	38
GluI	GCNGC	1 cut(s)	38
GsuI	CTGGAG	1 cut(s)	255
HaeIII	GGCC	1 cut(s)	132
Hin1II	CATG	2 cut(s)	182, 325
HincII	GTYRAC	1 cut(s)	396
HindII	GTYRAC	1 cut(s)	396
HinfI	GANTC	1 cut(s)	184
HphI	GGTGA	1 cut(s)	234
Hpy166II	GTNNAC	3 cut(s)	163, 330, 396
Hpy188I	TCNGA	1 cut(s)	154
Hpy188III	TCNNGA	2 cut(s)	164, 179
Hpy8I	GTNNAC	3 cut(s)	163, 330, 396
HpyAV	CCTTC	1 cut(s)	325
HpyCH4V	TGCA	6 cut(s)	37, 50, 92, 112, 368, 407
HpyF10VI	GCNNNNNNNGC	1 cut(s)	358
HpyF3I	CTNAG	3 cut(s)	120, 307, 399
Hsp92II	CATG	2 cut(s)	182, 325
Kzo9I	GATC	1 cut(s)	299
LmnI	GCTCC	2 cut(s)	172, 340
LpnPI	CCDG	2 cut(s)	285, 330
Lsp1109I	GCAGC	1 cut(s)	49
LweI	GCATC	2 cut(s)	37, 184
MalI	GATC	1 cut(s)	301
MboI	GATC	1 cut(s)	299
MlsI	TGGCCA	1 cut(s)	132
MluCI	AATT	3 cut(s)	250, 264, 385
MluNI	TGGCCA	1 cut(s)	132
MnlI	CCTC	4 cut(s)	163, 255, 279, 342
Mox20I	TGGCCA	1 cut(s)	132
MroXI	GAANNNNTTC	1 cut(s)	159
MscI	TGGCCA	1 cut(s)	132
MseI	TTAA	1 cut(s)	430
MslI	CAYNNNNRTG	1 cut(s)	138
Msp20I	TGGCCA	1 cut(s)	132
Mva1269I	GAATGC	4 cut(s)	114, 121, 368, 409
MwoI	GCNNNNNNNGC	1 cut(s)	358
NdeII	GATC	1 cut(s)	299
NlaIII	CATG	2 cut(s)	182, 325
PagI	TCATGA	1 cut(s)	178
PctI	GAATGC	4 cut(s)	114, 121, 368, 409
PdmI	GAANNNNTTC	1 cut(s)	159
PfeI	GAWTC	1 cut(s)	184
PkrI	GCNGC	1 cut(s)	39
RsaI	GTAC	1 cut(s)	329
RsaNI	GTAC	1 cut(s)	328
RseI	CAYNNNNRTG	1 cut(s)	138
SaqAI	TTAA	1 cut(s)	430
SatI	GCNGC	1 cut(s)	38
Sau3AI	GATC	1 cut(s)	299
SetI	ASST	7 cut(s)	19, 64, 217, 247, 295, 313, 430
SfaNI	GCATC	2 cut(s)	37, 184
SmiMI	CAYNNNNRTG	1 cut(s)	138
Sse9I	AATT	3 cut(s)	250, 264, 385
TasI	AATT	3 cut(s)	250, 264, 385
TatI	WGTACW	1 cut(s)	327
TfiI	GAWTC	1 cut(s)	184
Tru1I	TTAA	1 cut(s)	430
Tru9I	TTAA	1 cut(s)	430
TscAI	CASTG	1 cut(s)	337
TseI	GCWGC	1 cut(s)	37
TspDTI	ATGAA	3 cut(s)	69, 114, 213
TspRI	CASTG	1 cut(s)	337
XagI	CCTNNNNNAGG	1 cut(s)	342
XapI	RAATTY	3 cut(s)	250, 264, 385
XmnI	GAANNNNTTC	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.