Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0004836

Physical Location & Seq

Genomic Coordinates Reverse (-)

13488194 .. 13489822

Gene Structure 1629 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G012910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGAGAGAAACAGATCAAGAGCCTTCTCCTTTTGCCGCCAAATCTCCAAGCTTCTTCAAGATCGTTCTCGACAGTGCACTTCGAGATGGAAAGATTGAAATTCCAAAGGCATTTGTGATGAAGCATGGAAATTGTTTGGCAGAGTCAGTATTGCTTAAGGTTCCTAGCAGAGCAGAATGGCGAATAGGATTGACAAGGTGTGATGGTGAGGTTTGGTTAGAAAAGGGCTGGCCAGAATTCGCAAAGTTTTACTTCCTAGATCATGGATACTTATTAGTGTTCAGTTGTGAAGGTCATTATTCCAGTTTCCAAGTGCAAATTTTTAGTAGGAATGCTATGGAGATAGATTATCCCATGAATTCAAGCCTTGGCGAGGGGGAAGAACTTGAAGATGATGATGTTTCTGTTGAAATATTGGATGGGGGAAGCATGCCTACTGCATCAACTTCTTTAGAGTCTAATGAGCATGATGTTGATACAAGAGATGGAGCGTTTCTGAGAGCTACAAGTTTCAAGTATAGTAATCCATATCTTGCAGTCAGAATGCAAAAATCATACCTATCAAGATATTTGAAATTACAAGGAGCCTTTGCAAAAGAATGTGTTTGTGCTAGAGGTGTTCGTATTGTTAACCTACAGAATTCGGCTGGGAGAATTTGGCCTGCTACGTTCACTGTCGAGGTATGGAGTGAGGGAAAGCAACGACAAGGAAGAGTATCTTGGAAATCATTTGTGCATGACAATCATCTCAAAGTAGGGGATGCCTGTGTGTTTGAGCTGAAAAAGGGATGCGAAGTTCCAACGTTTAAAGTTCACATATTCCGAGCTGAAGATGCAGATGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

281

Amino Acids

31.76

Weight (kDa)

5.72

Isoelectric Point (pI)

38.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	19 - 111	4.1e-12	B3 DNA binding domain
B3	PF02362	190 - 276	7.7e-11	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004836)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g13840 FvH4_1g14720 FvH4_2g29240 FvH4_2g29322 FvH4_2g29350 FvH4_3g34770 FvH4_7g25080
malus_domestica	MD05G1037200.v1.1
prunus_persica	Prupe.7G143200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0103581 RchiOBHm_Chr5g0062511
rosa_laevigata	RLG00000017246 RLG00000035562
rosa_multiflora	Rmu_co8088552.1_g000001 Rmu_sc0001530.1_g000008 Rmu_sc0001852.1_g000021 Rmu_sc0004988.1_g000026
rosa_roxburghii	Rroxscaffold_1G00018100 Rroxscaffold_2G00139510
rosa_rugosa	Rorug02G0115900 Rorug05G0350300 Rorug05G0350300
rosa_samantha	Rh2AG164200 Rh2BG171400 Rh2CG170900 Rh2DG169500 Rh5AG410300 Rh5BG424300 Rh5DG438600
rosa_wichuraiana	Rw2G012910 Rw5G038630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	36
AclI	AACGTT	1 cut(s)	803
AcoI	YGGCCR	1 cut(s)	230
AcsI	RAATTY	6 cut(s)	99, 236, 318, 358, 640, 654
AfiI	CCNNNNNNNGG	1 cut(s)	373
AflII	CTTAAG	1 cut(s)	155
AgsI	TTSAA	7 cut(s)	58, 98, 363, 389, 410, 514, 574
AjuI	GAANNNNNNNTTGG	2 cut(s)	703, 735
AloI	GAACNNNNNNTCC	2 cut(s)	780, 812
AluBI	AGCT	4 cut(s)	51, 503, 778, 827
AluI	AGCT	4 cut(s)	51, 503, 778, 827
Alw21I	GWGCWC	1 cut(s)	79
Alw44I	GTGCAC	1 cut(s)	75
AoxI	GGCC	2 cut(s)	230, 659
ApaLI	GTGCAC	1 cut(s)	75
ApoI	RAATTY	6 cut(s)	99, 236, 318, 358, 640, 654
AsuHPI	GGTGA	1 cut(s)	218
BaeGI	GKGCMC	1 cut(s)	79
BalI	TGGCCA	1 cut(s)	232
BarI	GAAGNNNNNNTAC	2 cut(s)	418, 450
Bbv12I	GWGCWC	1 cut(s)	79
BccI	CCATC	4 cut(s)	80, 197, 413, 479
BciVI	GTATCC	1 cut(s)	260
BfaI	CTAG	3 cut(s)	165, 257, 612
BfmI	CTRYAG	1 cut(s)	635
BfrI	CTTAAG	1 cut(s)	155
BfuI	GTATCC	1 cut(s)	260
BisI	GCNGC	1 cut(s)	36
BlsI	GCNGC	1 cut(s)	37
BmiI	GGNNCC	2 cut(s)	162, 586
BmsI	GCATC	5 cut(s)	449, 751, 779, 823, 829
BsaJI	CCNNGG	1 cut(s)	367
Bsc4I	CCNNNNNNNGG	1 cut(s)	373
Bse1I	ACTGG	1 cut(s)	303
BseDI	CCNNGG	1 cut(s)	367
BseGI	GGATG	3 cut(s)	424, 766, 794
BseLI	CCNNNNNNNGG	1 cut(s)	373
BseMII	CTCAG	1 cut(s)	488
BseNI	ACTGG	1 cut(s)	303
BseSI	GKGCMC	1 cut(s)	79
BseYI	CCCAGC	1 cut(s)	647
BshFI	GGCC	2 cut(s)	232, 661
BsiHKAI	GWGCWC	1 cut(s)	79
BslI	CCNNNNNNNGG	1 cut(s)	373
BsmI	GAATGC	2 cut(s)	337, 549
BsnI	GGCC	2 cut(s)	232, 661
Bsp1286I	GDGCHC	1 cut(s)	79
Bsp143I	GATC	3 cut(s)	13, 60, 259
BspACI	CCGC	1 cut(s)	36
BspANI	GGCC	2 cut(s)	232, 661
BspCNI	CTCAG	1 cut(s)	489
BspLI	GGNNCC	2 cut(s)	162, 586
BspTI	CTTAAG	1 cut(s)	155
BsrI	ACTGG	1 cut(s)	303
BssECI	CCNNGG	1 cut(s)	367
BssMI	GATC	3 cut(s)	13, 60, 259
BssT1I	CCWWGG	1 cut(s)	367
Bst4CI	ACNGT	2 cut(s)	74, 676
Bst6I	CTCTTC	1 cut(s)	706
BstAFI	CTTAAG	1 cut(s)	155
BstC8I	GCNNGC	3 cut(s)	230, 431, 663
BstDEI	CTNAG	1 cut(s)	497
BstENI	CCTNNNNNAGG	1 cut(s)	371
BstF5I	GGATG	3 cut(s)	424, 766, 794
BstKTI	GATC	3 cut(s)	16, 63, 262
BstMBI	GATC	3 cut(s)	13, 60, 259
BstMWI	GCNNNNNNNGC	1 cut(s)	833
BstNSI	RCATGY	1 cut(s)	433
BstSFI	CTRYAG	1 cut(s)	635
BstSLI	GKGCMC	1 cut(s)	79
BsuI	GTATCC	1 cut(s)	260
BsuRI	GGCC	2 cut(s)	232, 661
BtsCI	GGATG	3 cut(s)	424, 766, 794
BtsIMutI	CAGTG	2 cut(s)	79, 672
Cac8I	GCNNGC	3 cut(s)	230, 431, 663
CviAII	CATG	6 cut(s)	125, 263, 355, 430, 467, 737
DdeI	CTNAG	1 cut(s)	497
DpnI	GATC	3 cut(s)	15, 62, 261
DpnII	GATC	3 cut(s)	13, 60, 259
DraI	TTTAAA	1 cut(s)	808
EaeI	YGGCCR	1 cut(s)	230
Eam1104I	CTCTTC	1 cut(s)	706
EarI	CTCTTC	1 cut(s)	706
Eco130I	CCWWGG	1 cut(s)	367
EcoNI	CCTNNNNNAGG	1 cut(s)	371
EcoRI	GAATTC	3 cut(s)	236, 358, 640
EcoT14I	CCWWGG	1 cut(s)	367
ErhI	CCWWGG	1 cut(s)	367
FaeI	CATG	6 cut(s)	128, 266, 358, 433, 470, 740
FalI	AAGNNNNNCTT	4 cut(s)	236, 268, 703, 735
FatI	CATG	6 cut(s)	124, 262, 354, 429, 466, 736
Fnu4HI	GCNGC	1 cut(s)	36
FokI	GGATG	3 cut(s)	431, 773, 801
Fsp4HI	GCNGC	1 cut(s)	36
FspBI	CTAG	3 cut(s)	165, 257, 612
GluI	GCNGC	1 cut(s)	36
GsaI	CCCAGC	1 cut(s)	651
HaeIII	GGCC	2 cut(s)	232, 661
Hin1II	CATG	6 cut(s)	128, 266, 358, 433, 470, 740
HincII	GTYRAC	1 cut(s)	631
HindII	GTYRAC	1 cut(s)	631
HindIII	AAGCTT	1 cut(s)	49
HinfI	GANTC	2 cut(s)	143, 455
HpaI	GTTAAC	1 cut(s)	631
HphI	GGTGA	1 cut(s)	218
Hpy166II	GTNNAC	4 cut(s)	77, 631, 672, 814
Hpy188I	TCNGA	3 cut(s)	498, 542, 824
Hpy188III	TCNNGA	5 cut(s)	17, 58, 68, 83, 564
Hpy8I	GTNNAC	4 cut(s)	77, 631, 672, 814
HpyAV	CCTTC	2 cut(s)	33, 284
HpyCH4III	ACNGT	2 cut(s)	74, 676
HpyCH4IV	ACGT	2 cut(s)	668, 803
HpyCH4V	TGCA	8 cut(s)	77, 316, 440, 536, 547, 593, 736, 836
HpyF10VI	GCNNNNNNNGC	1 cut(s)	833
HpyF3I	CTNAG	1 cut(s)	497
HpySE526I	ACGT	2 cut(s)	668, 803
Hsp92II	CATG	6 cut(s)	128, 266, 358, 433, 470, 740
KspAI	GTTAAC	1 cut(s)	631
Kzo9I	GATC	3 cut(s)	13, 60, 259
LmnI	GCTCC	2 cut(s)	488, 584
LpnPI	CCDG	6 cut(s)	214, 246, 316, 633, 675, 778
LweI	GCATC	5 cut(s)	449, 751, 779, 823, 829
MaeI	CTAG	3 cut(s)	165, 257, 612
MaeII	ACGT	2 cut(s)	668, 803
MalI	GATC	3 cut(s)	15, 62, 261
MboI	GATC	3 cut(s)	13, 60, 259
MboII	GAAGA	5 cut(s)	46, 392, 401, 723, 842
MhlI	GDGCHC	1 cut(s)	79
MlsI	TGGCCA	1 cut(s)	232
MluCI	AATT	8 cut(s)	99, 130, 236, 318, 358, 575, 640, 654
MluNI	TGGCCA	1 cut(s)	232
MlyI	GAGTC	2 cut(s)	152, 464
MmeI	TCCRAC	1 cut(s)	824
MnlI	CCTC	5 cut(s)	202, 367, 608, 673, 685
Mox20I	TGGCCA	1 cut(s)	232
MscI	TGGCCA	1 cut(s)	232
MseI	TTAA	3 cut(s)	156, 630, 807
Msp20I	TGGCCA	1 cut(s)	232
MspCI	CTTAAG	1 cut(s)	155
Mva1269I	GAATGC	2 cut(s)	337, 549
MwoI	GCNNNNNNNGC	1 cut(s)	833
NdeII	GATC	3 cut(s)	13, 60, 259
NlaIII	CATG	6 cut(s)	128, 266, 358, 433, 470, 740
NlaIV	GGNNCC	2 cut(s)	162, 586
NspI	RCATGY	1 cut(s)	433
PaeI	GCATGC	1 cut(s)	433
PctI	GAATGC	2 cut(s)	337, 549
PkrI	GCNGC	1 cut(s)	37
PleI	GAGTC	2 cut(s)	151, 463
PpsI	GAGTC	2 cut(s)	151, 463
Psp1406I	AACGTT	1 cut(s)	803
PspFI	CCCAGC	1 cut(s)	647
PspN4I	GGNNCC	2 cut(s)	162, 586
SaqAI	TTAA	3 cut(s)	156, 630, 807
SatI	GCNGC	1 cut(s)	36
Sau3AI	GATC	3 cut(s)	13, 60, 259
SchI	GAGTC	2 cut(s)	152, 464
SduI	GDGCHC	1 cut(s)	79
SfaNI	GCATC	5 cut(s)	449, 751, 779, 823, 829
SfcI	CTRYAG	1 cut(s)	635
SmlI	CTYRAG	1 cut(s)	155
SmoI	CTYRAG	1 cut(s)	155
SphI	GCATGC	1 cut(s)	433
Sse9I	AATT	8 cut(s)	99, 130, 236, 318, 358, 575, 640, 654
SsiI	CCGC	1 cut(s)	36
SspI	AATATT	1 cut(s)	414
SspMI	CTAG	3 cut(s)	165, 257, 612
StyI	CCWWGG	1 cut(s)	367
TaaI	ACNGT	2 cut(s)	74, 676
TaiI	ACGT	2 cut(s)	671, 806
TaqI	TCGA	3 cut(s)	69, 82, 678
TasI	AATT	8 cut(s)	99, 130, 236, 318, 358, 575, 640, 654
TauI	GCSGC	1 cut(s)	38
Tru1I	TTAA	3 cut(s)	156, 630, 807
Tru9I	TTAA	3 cut(s)	156, 630, 807
TscAI	CASTG	2 cut(s)	79, 679
TspDTI	ATGAA	2 cut(s)	134, 371
TspRI	CASTG	2 cut(s)	79, 679
Vha464I	CTTAAG	1 cut(s)	155
VneI	GTGCAC	1 cut(s)	75
XagI	CCTNNNNNAGG	1 cut(s)	371
XapI	RAATTY	6 cut(s)	99, 236, 318, 358, 640, 654
XceI	RCATGY	1 cut(s)	433
XspI	CTAG	3 cut(s)	165, 257, 612

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.