Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0004836

Physical Location & Seq

Genomic Coordinates Forward (+)

30081636 .. 30084925

Gene Structure 3290 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g34770.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGCTTCTTCAAAAAGGAGAAAGGGTAATAGTCTTGCCATTCAGGAGAAAACTCCAGGCTTCTTCAAGGTTGTTCTCAATAAGGCTCTTCAAGATGGGAAGCTTGAAATCAAAGGTTTCGTTGCGAGCAAGTATAGAGATTTCCTGGCAAACTCAGTAATCCTCAAGGATCCAAATGGAGCAAAGTGGCCAGTAAAATTGACAAGGTCTGATGGCAGCACTTGGTTGGAAAAGGGATGGCTTAAATTTGCACACTTTTACTCCCTTGAGGAAGGATACTTCTTGTTCTTCAGCTATGAATGTGTTGATTCGTGTTTTCATGTACGCATTTTTAGTAAGAATTATATAGAAATCAACTATCCATTTAAATCAAGTCAGCATGAAGAACCCAATTTAGGTGGAGGAGATGGTGTTAAATTTTCAAGCGCTGATAGTTTCAAATCTACCTTTCCATTTTGTGTCATCAAGGTCCAGCCTACATACGTGAAATACTACCACTTGCAAATACCAATATCCTATGCCAAAAATTTTATCTGCAGAGGTCAGACGCGGAATGTGGACCTCCGAATCCCAAAAGGAAAAACTTGGTCTGCTAAGAGCAGTGTCACTAAGCAAGCAGGACGCAGCGAGATTGCAAGAATCCATGGCGGTTGGAGCAAATTTGCGAAGGACAATCAACTGCGTGTCGGGGATGATATTGTTCTTGAGATGATAAAGCAGCAACCTAAGACTACATTTGAAGTTCATATCTTCCGAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

254

Amino Acids

28.94

Weight (kDa)

9.7

Isoelectric Point (pI)

42.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	29 - 114	5.5e-13	B3 DNA binding domain
B3	PF02362	152 - 253	9.4e-14	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004836)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g13840 FvH4_1g14720 FvH4_2g29240 FvH4_2g29322 FvH4_2g29350 FvH4_3g34770 FvH4_7g25080
malus_domestica	MD05G1037200.v1.1
prunus_persica	Prupe.7G143200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0103581 RchiOBHm_Chr5g0062511
rosa_laevigata	RLG00000017246 RLG00000035562
rosa_multiflora	Rmu_co8088552.1_g000001 Rmu_sc0001530.1_g000008 Rmu_sc0001852.1_g000021 Rmu_sc0004988.1_g000026
rosa_roxburghii	Rroxscaffold_1G00018100 Rroxscaffold_2G00139510
rosa_rugosa	Rorug02G0115900 Rorug05G0350300 Rorug05G0350300
rosa_samantha	Rh2AG164200 Rh2BG171400 Rh2CG170900 Rh2DG169500 Rh5AG410300 Rh5BG424300 Rh5DG438600
rosa_wichuraiana	Rw2G012910 Rw5G038630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	550
AciI	CCGC	2 cut(s)	550, 648
AclWI	GGATC	2 cut(s)	164, 177
AcoI	YGGCCR	1 cut(s)	188
AcsI	RAATTY	4 cut(s)	245, 416, 526, 659
AcuI	CTGAAG	1 cut(s)	274
AfaI	GTAC	1 cut(s)	324
AfeI	AGCGCT	1 cut(s)	427
AfiI	CCNNNNNNNGG	1 cut(s)	395
AgsI	TTSAA	7 cut(s)	12, 67, 92, 107, 423, 439, 740
AjnI	CCWGG	2 cut(s)	55, 144
AluBI	AGCT	3 cut(s)	103, 294, 758
AluI	AGCT	3 cut(s)	103, 294, 758
AlwI	GGATC	2 cut(s)	164, 177
Aor51HI	AGCGCT	1 cut(s)	427
AoxI	GGCC	1 cut(s)	188
ApeKI	GCWGC	3 cut(s)	216, 624, 718
ApoI	RAATTY	4 cut(s)	245, 416, 526, 659
AspLEI	GCGC	1 cut(s)	428
AspS9I	GGNCC	2 cut(s)	469, 559
AvaII	GGWCC	2 cut(s)	469, 559
BalI	TGGCCA	1 cut(s)	190
BamHI	GGATCC	1 cut(s)	169
BbvI	GCAGC	3 cut(s)	228, 636, 730
BccI	CCATC	4 cut(s)	89, 206, 231, 401
BciT130I	CCWGG	2 cut(s)	57, 146
BciVI	GTATCC	1 cut(s)	269
BfmI	CTRYAG	1 cut(s)	535
BfoI	RGCGCY	1 cut(s)	429
BfuI	GTATCC	1 cut(s)	269
BisI	GCNGC	3 cut(s)	217, 625, 719
BlsI	GCNGC	3 cut(s)	218, 626, 720
Bme1390I	CCNGG	2 cut(s)	57, 146
Bme18I	GGWCC	2 cut(s)	469, 559
BmgT120I	GGNCC	2 cut(s)	469, 559
BmiI	GGNNCC	1 cut(s)	171
BmrFI	CCNGG	2 cut(s)	57, 146
BpmI	CTGGAG	1 cut(s)	39
BpuEI	CTTGAG	3 cut(s)	149, 287, 725
BsaAI	YACGTR	1 cut(s)	484
BsaJI	CCNNGG	1 cut(s)	643
BsaXI	ACNNNNNCTCC	6 cut(s)	10, 40, 245, 275, 396, 426
Bsc4I	CCNNNNNNNGG	1 cut(s)	395
Bse1I	ACTGG	1 cut(s)	191
BseBI	CCWGG	2 cut(s)	57, 146
BseDI	CCNNGG	1 cut(s)	643
BseGI	GGATG	2 cut(s)	242, 697
BseLI	CCNNNNNNNGG	1 cut(s)	395
BseMII	CTCAG	1 cut(s)	168
BseNI	ACTGG	1 cut(s)	191
BseRI	GAGGAG	1 cut(s)	417
BseXI	GCAGC	3 cut(s)	228, 636, 730
Bsh1236I	CGCG	1 cut(s)	550
BshFI	GGCC	1 cut(s)	190
BslI	CCNNNNNNNGG	1 cut(s)	395
BsnI	GGCC	1 cut(s)	190
Bsp143I	GATC	1 cut(s)	169
Bsp19I	CCATGG	1 cut(s)	643
BspACI	CCGC	2 cut(s)	550, 648
BspANI	GGCC	1 cut(s)	190
BspCNI	CTCAG	1 cut(s)	167
BspFNI	CGCG	1 cut(s)	550
BspLI	GGNNCC	1 cut(s)	171
BspMAI	CTGCAG	1 cut(s)	539
BspPI	GGATC	2 cut(s)	164, 177
BspQI	GCTCTTC	1 cut(s)	93
BsrI	ACTGG	1 cut(s)	191
BssECI	CCNNGG	1 cut(s)	643
BssMI	GATC	1 cut(s)	169
BssT1I	CCWWGG	1 cut(s)	643
Bst2UI	CCWGG	2 cut(s)	57, 146
Bst6I	CTCTTC	1 cut(s)	93
BstBAI	YACGTR	1 cut(s)	484
BstC8I	GCNNGC	2 cut(s)	127, 615
BstDEI	CTNAG	4 cut(s)	154, 594, 609, 726
BstDSI	CCRYGG	1 cut(s)	643
BstF5I	GGATG	2 cut(s)	242, 697
BstFNI	CGCG	1 cut(s)	550
BstH2I	RGCGCY	1 cut(s)	429
BstHHI	GCGC	1 cut(s)	428
BstKTI	GATC	1 cut(s)	172
BstMBI	GATC	1 cut(s)	169
BstMWI	GCNNNNNNNGC	1 cut(s)	654
BstNI	CCWGG	2 cut(s)	57, 146
BstSCI	CCNGG	2 cut(s)	55, 144
BstSFI	CTRYAG	1 cut(s)	535
BstUI	CGCG	1 cut(s)	550
BstV1I	GCAGC	3 cut(s)	228, 636, 730
BstX2I	RGATCY	1 cut(s)	169
BstYI	RGATCY	1 cut(s)	169
BsuI	GTATCC	1 cut(s)	269
BsuRI	GGCC	1 cut(s)	190
BtgI	CCRYGG	1 cut(s)	643
BtsCI	GGATG	2 cut(s)	242, 697
BtsI	GCAGTG	1 cut(s)	607
BtsIMutI	CAGTG	1 cut(s)	607
Cac8I	GCNNGC	2 cut(s)	127, 615
CfoI	GCGC	1 cut(s)	428
Cfr13I	GGNCC	2 cut(s)	469, 559
CseI	GACGC	2 cut(s)	556, 630
Csp6I	GTAC	1 cut(s)	323
CspCI	CAANNNNNGTGG	2 cut(s)	379, 414
CviAII	CATG	3 cut(s)	320, 380, 644
CviJI	RGCY	9 cut(s)	5, 60, 86, 103, 190, 241, 294, 475, 758
CviKI_1	RGCY	9 cut(s)	5, 60, 86, 103, 190, 241, 294, 475, 758
CviQI	GTAC	1 cut(s)	323
DdeI	CTNAG	4 cut(s)	154, 594, 609, 726
DpnI	GATC	1 cut(s)	171
DpnII	GATC	1 cut(s)	169
DraI	TTTAAA	1 cut(s)	367
EaeI	YGGCCR	1 cut(s)	188
Eam1104I	CTCTTC	1 cut(s)	93
EarI	CTCTTC	1 cut(s)	93
Eco130I	CCWWGG	1 cut(s)	643
Eco47I	GGWCC	2 cut(s)	469, 559
Eco47III	AGCGCT	1 cut(s)	427
Eco57I	CTGAAG	1 cut(s)	274
EcoRII	CCWGG	2 cut(s)	55, 144
EcoT14I	CCWWGG	1 cut(s)	643
ErhI	CCWWGG	1 cut(s)	643
FaeI	CATG	3 cut(s)	323, 383, 647
FatI	CATG	3 cut(s)	319, 379, 643
Fnu4HI	GCNGC	3 cut(s)	217, 625, 719
FokI	GGATG	2 cut(s)	249, 704
Fsp4HI	GCNGC	3 cut(s)	217, 625, 719
GlaI	GCGC	1 cut(s)	427
GluI	GCNGC	3 cut(s)	217, 625, 719
GsuI	CTGGAG	1 cut(s)	39
HaeII	RGCGCY	1 cut(s)	429
HaeIII	GGCC	1 cut(s)	190
HgaI	GACGC	2 cut(s)	556, 630
HhaI	GCGC	1 cut(s)	428
Hin1II	CATG	3 cut(s)	323, 383, 647
Hin6I	GCGC	1 cut(s)	426
HinP1I	GCGC	1 cut(s)	426
HindIII	AAGCTT	1 cut(s)	101
HinfI	GANTC	3 cut(s)	308, 567, 639
Hpy166II	GTNNAC	1 cut(s)	559
Hpy188I	TCNGA	4 cut(s)	211, 546, 566, 755
Hpy188III	TCNNGA	3 cut(s)	44, 92, 704
Hpy8I	GTNNAC	1 cut(s)	559
HpyAV	CCTTC	2 cut(s)	266, 661
HpyCH4IV	ACGT	1 cut(s)	483
HpyCH4V	TGCA	4 cut(s)	251, 502, 537, 635
HpyF10VI	GCNNNNNNNGC	1 cut(s)	654
HpyF3I	CTNAG	4 cut(s)	154, 594, 609, 726
HpySE526I	ACGT	1 cut(s)	483
Hsp92II	CATG	3 cut(s)	323, 383, 647
HspAI	GCGC	1 cut(s)	426
Kzo9I	GATC	1 cut(s)	169
LguI	GCTCTTC	1 cut(s)	93
LmnI	GCTCC	2 cut(s)	179, 654
LpnPI	CCDG	8 cut(s)	29, 42, 69, 131, 158, 204, 485, 603
Lsp1109I	GCAGC	3 cut(s)	228, 636, 730
MaeII	ACGT	1 cut(s)	483
MaeIII	GTNAC	1 cut(s)	604
MalI	GATC	1 cut(s)	171
MboI	GATC	1 cut(s)	169
MboII	GAAGA	5 cut(s)	55, 80, 280, 395, 742
MflI	RGATCY	1 cut(s)	169
MlsI	TGGCCA	1 cut(s)	190
MluCI	AATT	7 cut(s)	197, 245, 340, 391, 416, 526, 659
MluNI	TGGCCA	1 cut(s)	190
MmeI	TCCRAC	2 cut(s)	207, 632
MnlI	CCTC	5 cut(s)	173, 262, 395, 533, 572
Mox20I	TGGCCA	1 cut(s)	190
MscI	TGGCCA	1 cut(s)	190
MseI	TTAA	4 cut(s)	243, 366, 414, 760
Msp20I	TGGCCA	1 cut(s)	190
MspR9I	CCNGG	2 cut(s)	57, 146
MvaI	CCWGG	2 cut(s)	57, 146
MvnI	CGCG	1 cut(s)	550
MwoI	GCNNNNNNNGC	1 cut(s)	654
NcoI	CCATGG	1 cut(s)	643
NdeII	GATC	1 cut(s)	169
NlaIII	CATG	3 cut(s)	323, 383, 647
NlaIV	GGNNCC	1 cut(s)	171
NmuCI	GTSAC	1 cut(s)	604
PciSI	GCTCTTC	1 cut(s)	93
PfeI	GAWTC	3 cut(s)	308, 567, 639
PflFI	GACNNNGTC	1 cut(s)	205
PkrI	GCNGC	3 cut(s)	218, 626, 720
Ppu21I	YACGTR	1 cut(s)	484
Psp6I	CCWGG	2 cut(s)	55, 144
PspGI	CCWGG	2 cut(s)	55, 144
PspN4I	GGNNCC	1 cut(s)	171
PspPI	GGNCC	2 cut(s)	469, 559
PstI	CTGCAG	1 cut(s)	539
PsuI	RGATCY	1 cut(s)	169
PsyI	GACNNNGTC	1 cut(s)	205
RsaI	GTAC	1 cut(s)	324
RsaNI	GTAC	1 cut(s)	323
SapI	GCTCTTC	1 cut(s)	93
SaqAI	TTAA	4 cut(s)	243, 366, 414, 760
SatI	GCNGC	3 cut(s)	217, 625, 719
Sau3AI	GATC	1 cut(s)	169
Sau96I	GGNCC	2 cut(s)	469, 559
ScrFI	CCNGG	2 cut(s)	57, 146
SfcI	CTRYAG	1 cut(s)	535
SinI	GGWCC	2 cut(s)	469, 559
SmiI	ATTTAAAT	1 cut(s)	367
SmlI	CTYRAG	3 cut(s)	164, 266, 704
SmoI	CTYRAG	3 cut(s)	164, 266, 704
Sse9I	AATT	7 cut(s)	197, 245, 340, 391, 416, 526, 659
SsiI	CCGC	2 cut(s)	550, 648
StyD4I	CCNGG	2 cut(s)	55, 144
StyI	CCWWGG	1 cut(s)	643
SwaI	ATTTAAAT	1 cut(s)	367
TaiI	ACGT	1 cut(s)	486
TasI	AATT	7 cut(s)	197, 245, 340, 391, 416, 526, 659
TfiI	GAWTC	3 cut(s)	308, 567, 639
Tru1I	TTAA	4 cut(s)	243, 366, 414, 760
Tru9I	TTAA	4 cut(s)	243, 366, 414, 760
TscAI	CASTG	1 cut(s)	607
TseFI	GTSAC	1 cut(s)	604
TseI	GCWGC	3 cut(s)	216, 624, 718
Tsp45I	GTSAC	1 cut(s)	604
TspDTI	ATGAA	4 cut(s)	308, 312, 396, 734
TspRI	CASTG	1 cut(s)	607
Tth111I	GACNNNGTC	1 cut(s)	205
VpaK11BI	GGWCC	2 cut(s)	469, 559
XapI	RAATTY	4 cut(s)	245, 416, 526, 659

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.