Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0004836

Physical Location & Seq

Genomic Coordinates Reverse (-)

43498111 .. 43504031

Gene Structure 5921 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0350300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGCCTCGTGATTTGGCGCGCTCAGAATCACGGTCGCCGTCTCGCAATAGGAGGAGGCGTTCCCCGTCTCCGGCGGTGGGCCATAGGTACAGCAAGAGAAGCCGAAGGGACAGAAGCAGCCGCTCTCCCTATTCCTCCTCATATTCTCATAGCAGACGCAAAAGTCGCTCTCCAACTCCAAGACGTCGTAAAAGTCGCTCTCCAACCCCAAGACGTCGTAAAAGTCGTTCTCCAACTCCAAGGCGTCGTAAAAGTCGCTCTCCAACTCCAAAACGTCGGAAAAGTCGCTCTCCAATTTTGAAACGTTATAAGAGGCAGAGAAGTAGGAGCTCTTCATTGTCTCCTGTTCACAAAACTCCTACTTCAAGTCTCGGATCATTGGAGAAGAAAAATGCAAGTGAAAAATTAAGAAAGGAAGAGGAAGAACAGAAGAAAAGGCGACAACATGAAGCAGAATTGAAGCTCATAGAAGAAGAGACCTCAAAAAGAGTGGAAGAAGCAATTCAGCGGAAAGTTGAGGAGAGCTTGAATTCTGAGGAGATTAAAGTAGAAATACAGACGCGGATGGAGGAGGGACGAAAGAAGCTTCTAAATGAAGTTGCGGCTCAACTTGAGAAGGAAAAGGAAGCAGCTATTATTGAGGCTAGACATAAGGAGGAACAAGACCAGAAAGAGAAAGAAGAGCTAGAAGGGATGCTTGAAGAGACTCGGAGAAGGGTAGAAGAAGCTCAAAGAAGGGAAGCTTTGGAGCAGCAGAGGAGGGAGGAGGAGCGGTACAGAGAGCTAGAAGAGCTCCAGAGACAAAAGGAAGAGGCGATGCGAAGGAAGAAACAAGAGGAGGAGGAACAACGGTCTAACCAAATGAAGCTGTTGGGTAAGAACAAATCCCGGCCAAAATTGTCATTTGCACTTGGATCCAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

307

Amino Acids

36.82

Weight (kDa)

10.86

Isoelectric Point (pI)

135.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARGLU	PF15346	149 - 304	1.2e-42	Arginine and glutamate-rich 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004836)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g13840 FvH4_1g14720 FvH4_2g29240 FvH4_2g29322 FvH4_2g29350 FvH4_3g34770 FvH4_7g25080
malus_domestica	MD05G1037200.v1.1
prunus_persica	Prupe.7G143200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0103581 RchiOBHm_Chr5g0062511
rosa_laevigata	RLG00000017246 RLG00000035562
rosa_multiflora	Rmu_co8088552.1_g000001 Rmu_sc0001530.1_g000008 Rmu_sc0001852.1_g000021 Rmu_sc0004988.1_g000026
rosa_roxburghii	Rroxscaffold_1G00018100 Rroxscaffold_2G00139510
rosa_rugosa	Rorug02G0115900 Rorug05G0350300 Rorug05G0350300
rosa_samantha	Rh2AG164200 Rh2BG171400 Rh2CG170900 Rh2DG169500 Rh5AG410300 Rh5BG424300 Rh5DG438600
rosa_wichuraiana	Rw2G012910 Rw5G038630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	309
AasI	GACNNNNNNGTC	1 cut(s)	162
AatII	GACGTC	2 cut(s)	187, 217
AccBSI	CCGCTC	2 cut(s)	123, 772
AccII	CGCG	2 cut(s)	19, 562
AciI	CCGC	6 cut(s)	74, 121, 508, 562, 602, 772
AclI	AACGTT	1 cut(s)	304
AclWI	GGATC	3 cut(s)	382, 909, 922
AcoI	YGGCCR	1 cut(s)	890
AcsI	RAATTY	1 cut(s)	529
AcyI	GRCGYC	3 cut(s)	184, 214, 244
AfaI	GTAC	2 cut(s)	89, 776
AfiI	CCNNNNNNNGG	2 cut(s)	70, 77
AgsI	TTSAA	5 cut(s)	301, 366, 460, 529, 701
AloI	GAACNNNNNNTCC	2 cut(s)	43, 75
Alw21I	GWGCWC	2 cut(s)	332, 795
Alw26I	GTCTC	7 cut(s)	45, 72, 345, 374, 470, 698, 793
AlwI	GGATC	3 cut(s)	382, 909, 922
AoxI	GGCC	2 cut(s)	79, 890
ApeKI	GCWGC	3 cut(s)	117, 629, 751
ApoI	RAATTY	1 cut(s)	529
Asp700I	GAANNNNTTC	1 cut(s)	501
AspLEI	GCGC	2 cut(s)	19, 21
AspS9I	GGNCC	1 cut(s)	79
AsuC2I	CCSGG	1 cut(s)	889
BamHI	GGATCC	1 cut(s)	914
BanII	GRGCYC	2 cut(s)	332, 795
BarI	GAAGNNNNNNTAC	2 cut(s)	316, 348
BauI	CACGAG	1 cut(s)	6
Bbv12I	GWGCWC	2 cut(s)	332, 795
BbvI	GCAGC	3 cut(s)	129, 641, 763
BccI	CCATC	1 cut(s)	559
BceAI	ACGGC	1 cut(s)	22
BcnI	CCSGG	1 cut(s)	889
BcoDI	GTCTC	7 cut(s)	45, 72, 345, 374, 470, 698, 793
BfaI	CTAG	3 cut(s)	645, 686, 785
BisI	GCNGC	5 cut(s)	118, 121, 603, 630, 752
BlsI	GCNGC	5 cut(s)	119, 122, 604, 631, 753
Bme1390I	CCNGG	1 cut(s)	889
BmgT120I	GGNCC	1 cut(s)	79
BmiI	GGNNCC	1 cut(s)	916
BmrFI	CCNGG	1 cut(s)	889
BmsI	GCATC	2 cut(s)	684, 807
BpmI	CTGGAG	1 cut(s)	779
BpuEI	CTTGAG	1 cut(s)	632
BpuMI	CCSGG	1 cut(s)	889
BsaHI	GRCGYC	3 cut(s)	184, 214, 244
BsaI	GGTCTC	1 cut(s)	470
BsaJI	CCNNGG	1 cut(s)	239
BsaXI	ACNNNNNCTCC	4 cut(s)	43, 73, 758, 788
Bsc4I	CCNNNNNNNGG	2 cut(s)	70, 77
BseDI	CCNNGG	1 cut(s)	239
BseGI	GGATG	2 cut(s)	570, 699
BseLI	CCNNNNNNNGG	2 cut(s)	70, 77
BseMII	CTCAG	2 cut(s)	36, 525
BsePI	GCGCGC	1 cut(s)	17
BseXI	GCAGC	3 cut(s)	129, 641, 763
Bsh1236I	CGCG	2 cut(s)	19, 562
Bsh1285I	CGRYCG	1 cut(s)	35
BshFI	GGCC	2 cut(s)	81, 892
BsiEI	CGRYCG	1 cut(s)	35
BsiHKAI	GWGCWC	2 cut(s)	332, 795
BsiSI	CCGG	2 cut(s)	71, 889
BslFI	GGGAC	2 cut(s)	122, 588
BslI	CCNNNNNNNGG	2 cut(s)	70, 77
BsmAI	GTCTC	7 cut(s)	45, 72, 345, 374, 470, 698, 793
BsmBI	CGTCTC	2 cut(s)	45, 72
BsmFI	GGGAC	2 cut(s)	122, 588
BsnI	GGCC	2 cut(s)	81, 892
Bso31I	GGTCTC	1 cut(s)	470
Bsp1286I	GDGCHC	2 cut(s)	332, 795
Bsp143I	GATC	2 cut(s)	374, 914
BspACI	CCGC	6 cut(s)	74, 121, 508, 562, 602, 772
BspANI	GGCC	2 cut(s)	81, 892
BspCNI	CTCAG	2 cut(s)	35, 526
BspFNI	CGCG	2 cut(s)	19, 562
BspLI	GGNNCC	1 cut(s)	916
BspPI	GGATC	3 cut(s)	382, 909, 922
BspQI	GCTCTTC	3 cut(s)	337, 675, 783
BspTNI	GGTCTC	1 cut(s)	470
BsrBI	CCGCTC	2 cut(s)	123, 772
BssECI	CCNNGG	1 cut(s)	239
BssHII	GCGCGC	1 cut(s)	17
BssMI	GATC	2 cut(s)	374, 914
BssNI	GRCGYC	3 cut(s)	184, 214, 244
BssSI	CACGAG	1 cut(s)	6
BssT1I	CCWWGG	1 cut(s)	239
Bst2BI	CACGAG	1 cut(s)	6
Bst4CI	ACNGT	2 cut(s)	33, 852
Bst6I	CTCTTC	7 cut(s)	337, 411, 468, 675, 696, 783, 804
BstACI	GRCGYC	3 cut(s)	184, 214, 244
BstC8I	GCNNGC	1 cut(s)	19
BstDEI	CTNAG	2 cut(s)	22, 534
BstF5I	GGATG	2 cut(s)	570, 699
BstFNI	CGCG	2 cut(s)	19, 562
BstHHI	GCGC	2 cut(s)	19, 21
BstKTI	GATC	2 cut(s)	377, 917
BstMAI	GTCTC	7 cut(s)	45, 72, 345, 374, 470, 698, 793
BstMBI	GATC	2 cut(s)	374, 914
BstMCI	CGRYCG	1 cut(s)	35
BstMWI	GCNNNNNNNGC	3 cut(s)	99, 165, 790
BstSCI	CCNGG	1 cut(s)	887
BstUI	CGCG	2 cut(s)	19, 562
BstV1I	GCAGC	3 cut(s)	129, 641, 763
BstX2I	RGATCY	1 cut(s)	914
BstYI	RGATCY	1 cut(s)	914
BsuRI	GGCC	2 cut(s)	81, 892
BtgZI	GCGATG	1 cut(s)	830
BtsCI	GGATG	2 cut(s)	570, 699
Cac8I	GCNNGC	1 cut(s)	19
CfoI	GCGC	2 cut(s)	19, 21
Cfr13I	GGNCC	1 cut(s)	79
CseI	GACGC	3 cut(s)	165, 233, 568
Csp6I	GTAC	2 cut(s)	88, 775
CspCI	CAANNNNNGTGG	2 cut(s)	471, 506
CviAII	CATG	1 cut(s)	446
CviQI	GTAC	2 cut(s)	88, 775
DdeI	CTNAG	2 cut(s)	22, 534
DpnI	GATC	2 cut(s)	376, 916
DpnII	GATC	2 cut(s)	374, 914
DrdI	GACNNNNNNGTC	1 cut(s)	162
DseDI	GACNNNNNNGTC	1 cut(s)	162
EaeI	YGGCCR	1 cut(s)	890
Eam1104I	CTCTTC	7 cut(s)	337, 411, 468, 675, 696, 783, 804
EarI	CTCTTC	7 cut(s)	337, 411, 468, 675, 696, 783, 804
Ecl136II	GAGCTC	2 cut(s)	330, 793
Eco130I	CCWWGG	1 cut(s)	239
Eco24I	GRGCYC	2 cut(s)	332, 795
Eco31I	GGTCTC	1 cut(s)	470
Eco53kI	GAGCTC	2 cut(s)	330, 793
EcoICRI	GAGCTC	2 cut(s)	330, 793
EcoRI	GAATTC	1 cut(s)	529
EcoT14I	CCWWGG	1 cut(s)	239
EcoT38I	GRGCYC	2 cut(s)	332, 795
ErhI	CCWWGG	1 cut(s)	239
Esp3I	CGTCTC	2 cut(s)	45, 72
FaeI	CATG	1 cut(s)	449
FaiI	YATR	7 cut(s)	84, 142, 150, 309, 447, 467, 651
FalI	AAGNNNNNCTT	4 cut(s)	681, 713, 727, 759
FaqI	GGGAC	2 cut(s)	122, 588
FatI	CATG	1 cut(s)	445
Fnu4HI	GCNGC	5 cut(s)	118, 121, 603, 630, 752
FokI	GGATG	2 cut(s)	577, 706
FriOI	GRGCYC	2 cut(s)	332, 795
Fsp4HI	GCNGC	5 cut(s)	118, 121, 603, 630, 752
FspBI	CTAG	3 cut(s)	645, 686, 785
GlaI	GCGC	2 cut(s)	18, 20
GluI	GCNGC	5 cut(s)	118, 121, 603, 630, 752
GsuI	CTGGAG	1 cut(s)	779
HaeIII	GGCC	2 cut(s)	81, 892
HapII	CCGG	2 cut(s)	71, 889
HgaI	GACGC	3 cut(s)	165, 233, 568
HhaI	GCGC	2 cut(s)	19, 21
Hin1I	GRCGYC	3 cut(s)	184, 214, 244
Hin1II	CATG	1 cut(s)	449
Hin6I	GCGC	2 cut(s)	17, 19
HinP1I	GCGC	2 cut(s)	17, 19
HindIII	AAGCTT	2 cut(s)	584, 741
HinfI	GANTC	2 cut(s)	26, 706
HpaII	CCGG	2 cut(s)	71, 889
Hpy166II	GTNNAC	1 cut(s)	349
Hpy188I	TCNGA	5 cut(s)	25, 279, 374, 535, 711
Hpy188III	TCNNGA	2 cut(s)	8, 796
Hpy8I	GTNNAC	1 cut(s)	349
Hpy99I	CGWCG	4 cut(s)	189, 219, 249, 279
HpyAV	CCTTC	6 cut(s)	99, 610, 683, 708, 729, 816
HpyCH4III	ACNGT	2 cut(s)	33, 852
HpyCH4IV	ACGT	4 cut(s)	184, 214, 274, 304
HpyCH4V	TGCA	2 cut(s)	395, 908
HpyF10VI	GCNNNNNNNGC	3 cut(s)	99, 165, 790
HpyF3I	CTNAG	2 cut(s)	22, 534
HpySE526I	ACGT	4 cut(s)	184, 214, 274, 304
Hsp92I	GRCGYC	3 cut(s)	184, 214, 244
Hsp92II	CATG	1 cut(s)	449
HspAI	GCGC	2 cut(s)	17, 19
Kzo9I	GATC	2 cut(s)	374, 914
LguI	GCTCTTC	3 cut(s)	337, 675, 783
LmnI	GCTCC	4 cut(s)	327, 748, 769, 798
LpnPI	CCDG	5 cut(s)	84, 357, 680, 809, 902
Lsp1109I	GCAGC	3 cut(s)	129, 641, 763
LweI	GCATC	2 cut(s)	684, 807
MaeI	CTAG	3 cut(s)	645, 686, 785
MaeII	ACGT	4 cut(s)	184, 214, 274, 304
MalI	GATC	2 cut(s)	376, 916
MbiI	CCGCTC	2 cut(s)	123, 772
MboI	GATC	2 cut(s)	374, 914
MflI	RGATCY	1 cut(s)	914
MhlI	GDGCHC	2 cut(s)	332, 795
MluCI	AATT	6 cut(s)	294, 404, 455, 501, 529, 896
MlyI	GAGTC	1 cut(s)	700
MmeI	TCCRAC	5 cut(s)	197, 227, 257, 257, 287
MroXI	GAANNNNTTC	1 cut(s)	501
MseI	TTAA	2 cut(s)	407, 543
MspA1I	CMGCKG	1 cut(s)	508
MspI	CCGG	2 cut(s)	71, 889
MspR9I	CCNGG	1 cut(s)	889
MvnI	CGCG	2 cut(s)	19, 562
MwoI	GCNNNNNNNGC	3 cut(s)	99, 165, 790
NciI	CCSGG	1 cut(s)	889
NdeII	GATC	2 cut(s)	374, 914
NlaIII	CATG	1 cut(s)	449
NlaIV	GGNNCC	1 cut(s)	916
PauI	GCGCGC	1 cut(s)	17
PciSI	GCTCTTC	3 cut(s)	337, 675, 783
PcsI	WCGNNNNNNNCGW	1 cut(s)	223
PdmI	GAANNNNTTC	1 cut(s)	501
PfeI	GAWTC	1 cut(s)	26
PkrI	GCNGC	5 cut(s)	119, 122, 604, 631, 753
PleI	GAGTC	1 cut(s)	700
PpsI	GAGTC	1 cut(s)	700
PsiI	TTATAA	1 cut(s)	309
Psp124BI	GAGCTC	2 cut(s)	332, 795
Psp1406I	AACGTT	1 cut(s)	304
PspN4I	GGNNCC	1 cut(s)	916
PspPI	GGNCC	1 cut(s)	79
PsrI	GAACNNNNNNTAC	2 cut(s)	211, 243
PsuI	RGATCY	1 cut(s)	914
PteI	GCGCGC	1 cut(s)	17
RsaI	GTAC	2 cut(s)	89, 776
RsaNI	GTAC	2 cut(s)	88, 775
SacI	GAGCTC	2 cut(s)	332, 795
SapI	GCTCTTC	3 cut(s)	337, 675, 783
SaqAI	TTAA	2 cut(s)	407, 543
SatI	GCNGC	5 cut(s)	118, 121, 603, 630, 752
Sau3AI	GATC	2 cut(s)	374, 914
Sau96I	GGNCC	1 cut(s)	79
SchI	GAGTC	1 cut(s)	700
ScrFI	CCNGG	1 cut(s)	889
SduI	GDGCHC	2 cut(s)	332, 795
SfaNI	GCATC	2 cut(s)	684, 807
SmlI	CTYRAG	1 cut(s)	611
SmoI	CTYRAG	1 cut(s)	611
Sse9I	AATT	6 cut(s)	294, 404, 455, 501, 529, 896
SsiI	CCGC	6 cut(s)	74, 121, 508, 562, 602, 772
SspMI	CTAG	3 cut(s)	645, 686, 785
SstI	GAGCTC	2 cut(s)	332, 795
StyD4I	CCNGG	1 cut(s)	887
StyI	CCWWGG	1 cut(s)	239
TaaI	ACNGT	2 cut(s)	33, 852
TaiI	ACGT	4 cut(s)	187, 217, 277, 307
TasI	AATT	6 cut(s)	294, 404, 455, 501, 529, 896
TauI	GCSGC	2 cut(s)	123, 605
TfiI	GAWTC	1 cut(s)	26
Tru1I	TTAA	2 cut(s)	407, 543
Tru9I	TTAA	2 cut(s)	407, 543
TseI	GCWGC	3 cut(s)	117, 629, 751
TspDTI	ATGAA	4 cut(s)	324, 462, 609, 878
XapI	RAATTY	1 cut(s)	529
XmnI	GAANNNNTTC	1 cut(s)	501
XspI	CTAG	3 cut(s)	645, 686, 785
ZraI	GACGTC	2 cut(s)	185, 215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.