Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0004836

Physical Location & Seq

Genomic Coordinates Reverse (-)

22712565 .. 22712839

Gene Structure 275 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g29240.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

ATGTTTGCCCAAAATCCAAGAGGTTGCAGTGTAAACCTACAAATTCCAAATGGGGGAACTTGGTGTGCTAAATGCATCGTCAGCCGGTGCGGGGAAAACGACTATGCAAGAATCCATGGCAGTTGGACAAAATTTGCAAGAGATAATGATTTGCAAGCAAGGGATGCTATTGTGCTCGAGCTGATTCAGCAGCAGCATGAAGTTACACTCGAAGTCCATATTTTTCGAGCACAAAGATGTACGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

82

Amino Acids

9.23

Weight (kDa)

7.67

Isoelectric Point (pI)

25.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	5 - 77	2.2e-11	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0004836)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g13840 FvH4_1g14720 FvH4_2g29240 FvH4_2g29322 FvH4_2g29350 FvH4_3g34770 FvH4_7g25080
malus_domestica	MD05G1037200.v1.1
prunus_persica	Prupe.7G143200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0103581 RchiOBHm_Chr5g0062511
rosa_laevigata	RLG00000017246 RLG00000035562
rosa_multiflora	Rmu_co8088552.1_g000001 Rmu_sc0001530.1_g000008 Rmu_sc0001852.1_g000021 Rmu_sc0004988.1_g000026
rosa_roxburghii	Rroxscaffold_1G00018100 Rroxscaffold_2G00139510
rosa_rugosa	Rorug02G0115900 Rorug05G0350300 Rorug05G0350300
rosa_samantha	Rh2AG164200 Rh2BG171400 Rh2CG170900 Rh2DG169500 Rh5AG410300 Rh5BG424300 Rh5DG438600
rosa_wichuraiana	Rw2G012910 Rw5G038630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	90
AcsI	RAATTY	2 cut(s)	42, 131
AfaI	GTAC	1 cut(s)	241
AfiI	CCNNNNNNNGG	2 cut(s)	53, 91
AluBI	AGCT	1 cut(s)	181
AluI	AGCT	1 cut(s)	181
Alw21I	GWGCWC	2 cut(s)	177, 232
Ama87I	CYCGRG	1 cut(s)	176
ApeKI	GCWGC	2 cut(s)	190, 193
ApoI	RAATTY	2 cut(s)	42, 131
AvaI	CYCGRG	1 cut(s)	176
Bbv12I	GWGCWC	2 cut(s)	177, 232
BbvI	GCAGC	2 cut(s)	202, 205
BisI	GCNGC	2 cut(s)	191, 194
BlsI	GCNGC	2 cut(s)	192, 195
BmeT110I	CYCGRG	1 cut(s)	176
BmsI	GCATC	2 cut(s)	84, 154
BsaAI	YACGTR	1 cut(s)	243
BsaJI	CCNNGG	1 cut(s)	115
Bsc4I	CCNNNNNNNGG	2 cut(s)	53, 91
Bse118I	RCCGGY	1 cut(s)	84
BseDI	CCNNGG	1 cut(s)	115
BseGI	GGATG	1 cut(s)	169
BseLI	CCNNNNNNNGG	2 cut(s)	53, 91
BseXI	GCAGC	2 cut(s)	202, 205
BsiHKAI	GWGCWC	2 cut(s)	177, 232
BsiHKCI	CYCGRG	1 cut(s)	176
BsiSI	CCGG	1 cut(s)	85
BslI	CCNNNNNNNGG	2 cut(s)	53, 91
BsoBI	CYCGRG	1 cut(s)	176
Bsp1286I	GDGCHC	2 cut(s)	177, 232
Bsp19I	CCATGG	1 cut(s)	115
BspACI	CCGC	1 cut(s)	90
BsrFI	RCCGGY	1 cut(s)	84
BssAI	RCCGGY	1 cut(s)	84
BssECI	CCNNGG	1 cut(s)	115
BssT1I	CCWWGG	1 cut(s)	115
BstAPI	GCANNNNNTGC	1 cut(s)	164
BstBAI	YACGTR	1 cut(s)	243
BstC8I	GCNNGC	1 cut(s)	156
BstDSI	CCRYGG	1 cut(s)	115
BstF5I	GGATG	1 cut(s)	169
BstMWI	GCNNNNNNNGC	3 cut(s)	81, 164, 187
BstSNI	TACGTA	1 cut(s)	243
BstV1I	GCAGC	2 cut(s)	202, 205
BtgI	CCRYGG	1 cut(s)	115
BtsCI	GGATG	1 cut(s)	169
BtsI	GCAGTG	1 cut(s)	34
BtsIMutI	CAGTG	1 cut(s)	34
Cac8I	GCNNGC	1 cut(s)	156
Cfr10I	RCCGGY	1 cut(s)	84
Csp6I	GTAC	1 cut(s)	240
CviAII	CATG	2 cut(s)	116, 197
CviJI	RGCY	2 cut(s)	84, 181
CviKI_1	RGCY	2 cut(s)	84, 181
CviQI	GTAC	1 cut(s)	240
Eco105I	TACGTA	1 cut(s)	243
Eco130I	CCWWGG	1 cut(s)	115
Eco88I	CYCGRG	1 cut(s)	176
EcoT14I	CCWWGG	1 cut(s)	115
EcoT22I	ATGCAT	1 cut(s)	77
ErhI	CCWWGG	1 cut(s)	115
FaeI	CATG	2 cut(s)	119, 200
FaiI	YATR	4 cut(s)	105, 117, 198, 219
FatI	CATG	2 cut(s)	115, 196
FauI	CCCGC	1 cut(s)	83
Fnu4HI	GCNGC	2 cut(s)	191, 194
FokI	GGATG	1 cut(s)	176
Fsp4HI	GCNGC	2 cut(s)	191, 194
GluI	GCNGC	2 cut(s)	191, 194
HapII	CCGG	1 cut(s)	85
Hin1II	CATG	2 cut(s)	119, 200
HinfI	GANTC	2 cut(s)	111, 184
HpaII	CCGG	1 cut(s)	85
Hpy166II	GTNNAC	1 cut(s)	34
Hpy8I	GTNNAC	1 cut(s)	34
HpyCH4IV	ACGT	1 cut(s)	242
HpyCH4V	TGCA	5 cut(s)	27, 75, 107, 137, 154
HpyF10VI	GCNNNNNNNGC	3 cut(s)	81, 164, 187
HpySE526I	ACGT	1 cut(s)	242
Hsp92II	CATG	2 cut(s)	119, 200
LpnPI	CCDG	1 cut(s)	98
Lsp1109I	GCAGC	2 cut(s)	202, 205
LweI	GCATC	2 cut(s)	84, 154
MaeII	ACGT	1 cut(s)	242
MaeIII	GTNAC	1 cut(s)	202
MhlI	GDGCHC	2 cut(s)	177, 232
MluCI	AATT	2 cut(s)	42, 131
MmeI	TCCRAC	1 cut(s)	104
MnlI	CCTC	1 cut(s)	14
Mph1103I	ATGCAT	1 cut(s)	77
MslI	CAYNNNNRTG	1 cut(s)	235
MspI	CCGG	1 cut(s)	85
MwoI	GCNNNNNNNGC	3 cut(s)	81, 164, 187
NcoI	CCATGG	1 cut(s)	115
NlaIII	CATG	2 cut(s)	119, 200
NsiI	ATGCAT	1 cut(s)	77
PaeR7I	CTCGAG	1 cut(s)	176
PfeI	GAWTC	2 cut(s)	111, 184
PkrI	GCNGC	2 cut(s)	192, 195
Ppu21I	YACGTR	1 cut(s)	243
PspXI	VCTCGAGB	1 cut(s)	176
RsaI	GTAC	1 cut(s)	241
RsaNI	GTAC	1 cut(s)	240
RseI	CAYNNNNRTG	1 cut(s)	235
SatI	GCNGC	2 cut(s)	191, 194
SduI	GDGCHC	2 cut(s)	177, 232
SetI	ASST	4 cut(s)	25, 39, 183, 245
SfaNI	GCATC	2 cut(s)	84, 154
Sfr274I	CTCGAG	1 cut(s)	176
SlaI	CTCGAG	1 cut(s)	176
SmiMI	CAYNNNNRTG	1 cut(s)	235
SmlI	CTYRAG	1 cut(s)	176
SmoI	CTYRAG	1 cut(s)	176
SnaBI	TACGTA	1 cut(s)	243
Sse9I	AATT	2 cut(s)	42, 131
SsiI	CCGC	1 cut(s)	90
StyI	CCWWGG	1 cut(s)	115
TaiI	ACGT	1 cut(s)	245
TaqI	TCGA	3 cut(s)	177, 210, 226
TasI	AATT	2 cut(s)	42, 131
TfiI	GAWTC	2 cut(s)	111, 184
TscAI	CASTG	1 cut(s)	34
TseI	GCWGC	2 cut(s)	190, 193
TspDTI	ATGAA	1 cut(s)	213
TspRI	CASTG	1 cut(s)	34
XapI	RAATTY	2 cut(s)	42, 131
XhoI	CTCGAG	1 cut(s)	176
Zsp2I	ATGCAT	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.