Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0004836

Physical Location & Seq

Genomic Coordinates Reverse (-)

19209724 .. 19210293

Gene Structure 570 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g25080.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGAGGAAGCCGATTTCTGCAGAGAACATCCAAGAGTCCTTTGTTCATCAATACGTCTTTCAAGGACACCTCAGTCGGAGTGTAAACCTACAGATTCCAAATGGGGGAACTTGGTGTGCTAAATGCACTGTCAGCCGGTGCGGGGAACACAACTATGCAAGAATCCACCGCGGTTGGACAAAATTTGCAAGAGATAATGATTTGCAAGCAGGGGATGTTATTGTGATCGAGCTGATTCAGCAGCAGCCTGAAGTCCATATTTATCGATCTCAAATTTCAAAAATGTATGTAGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

99

Amino Acids

11.29

Weight (kDa)

8.93

Isoelectric Point (pI)

60.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	12 - 90	2.9e-12	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004836)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g13840 FvH4_1g14720 FvH4_2g29240 FvH4_2g29322 FvH4_2g29350 FvH4_3g34770 FvH4_7g25080
malus_domestica	MD05G1037200.v1.1
prunus_persica	Prupe.7G143200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0103581 RchiOBHm_Chr5g0062511
rosa_laevigata	RLG00000017246 RLG00000035562
rosa_multiflora	Rmu_co8088552.1_g000001 Rmu_sc0001530.1_g000008 Rmu_sc0001852.1_g000021 Rmu_sc0004988.1_g000026
rosa_roxburghii	Rroxscaffold_1G00018100 Rroxscaffold_2G00139510
rosa_rugosa	Rorug02G0115900 Rorug05G0350300 Rorug05G0350300
rosa_samantha	Rh2AG164200 Rh2BG171400 Rh2CG170900 Rh2DG169500 Rh5AG410300 Rh5BG424300 Rh5DG438600
rosa_wichuraiana	Rw2G012910 Rw5G038630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	72
AccII	CGCG	1 cut(s)	171
AciI	CCGC	3 cut(s)	141, 169, 171
AcsI	RAATTY	2 cut(s)	182, 273
AcuI	CTGAAG	1 cut(s)	270
AfiI	CCNNNNNNNGG	2 cut(s)	104, 142
AgsI	TTSAA	2 cut(s)	62, 279
AluBI	AGCT	1 cut(s)	232
AluI	AGCT	1 cut(s)	232
ApeKI	GCWGC	2 cut(s)	241, 244
ApoI	RAATTY	2 cut(s)	182, 273
BbvI	GCAGC	2 cut(s)	253, 256
BfmI	CTRYAG	2 cut(s)	18, 89
BisI	GCNGC	2 cut(s)	242, 245
BlsI	GCNGC	2 cut(s)	243, 246
Bsa29I	ATCGAT	1 cut(s)	265
BsaJI	CCNNGG	1 cut(s)	169
Bsc4I	CCNNNNNNNGG	2 cut(s)	104, 142
Bse118I	RCCGGY	1 cut(s)	135
BseCI	ATCGAT	1 cut(s)	265
BseDI	CCNNGG	1 cut(s)	169
BseGI	GGATG	2 cut(s)	27, 220
BseLI	CCNNNNNNNGG	2 cut(s)	104, 142
BseMII	CTCAG	1 cut(s)	85
BseXI	GCAGC	2 cut(s)	253, 256
Bsh1236I	CGCG	1 cut(s)	171
BshVI	ATCGAT	1 cut(s)	265
BsiSI	CCGG	1 cut(s)	136
BslI	CCNNNNNNNGG	2 cut(s)	104, 142
Bsp143I	GATC	2 cut(s)	225, 266
BspACI	CCGC	3 cut(s)	141, 169, 171
BspCNI	CTCAG	1 cut(s)	84
BspDI	ATCGAT	1 cut(s)	265
BspFNI	CGCG	1 cut(s)	171
BspMAI	CTGCAG	1 cut(s)	22
BsrFI	RCCGGY	1 cut(s)	135
BssAI	RCCGGY	1 cut(s)	135
BssECI	CCNNGG	1 cut(s)	169
BssMI	GATC	2 cut(s)	225, 266
Bst4CI	ACNGT	1 cut(s)	130
BstC8I	GCNNGC	1 cut(s)	207
BstDEI	CTNAG	1 cut(s)	71
BstDSI	CCRYGG	1 cut(s)	169
BstF5I	GGATG	2 cut(s)	27, 220
BstFNI	CGCG	1 cut(s)	171
BstKTI	GATC	2 cut(s)	228, 269
BstMBI	GATC	2 cut(s)	225, 266
BstMWI	GCNNNNNNNGC	2 cut(s)	132, 238
BstSFI	CTRYAG	2 cut(s)	18, 89
BstUI	CGCG	1 cut(s)	171
BstV1I	GCAGC	2 cut(s)	253, 256
Bsu15I	ATCGAT	1 cut(s)	265
BsuTUI	ATCGAT	1 cut(s)	265
BtgI	CCRYGG	1 cut(s)	169
BtsCI	GGATG	2 cut(s)	27, 220
BtsIMutI	CAGTG	1 cut(s)	126
Cac8I	GCNNGC	1 cut(s)	207
Cfr10I	RCCGGY	1 cut(s)	135
Cfr42I	CCGCGG	1 cut(s)	172
ClaI	ATCGAT	1 cut(s)	265
CspCI	CAANNNNNGTGG	2 cut(s)	155, 190
CviJI	RGCY	5 cut(s)	10, 135, 232, 247, 294
CviKI_1	RGCY	5 cut(s)	10, 135, 232, 247, 294
DdeI	CTNAG	1 cut(s)	71
DpnI	GATC	2 cut(s)	227, 268
DpnII	GATC	2 cut(s)	225, 266
DrdI	GACNNNNNNGTC	1 cut(s)	72
DseDI	GACNNNNNNGTC	1 cut(s)	72
Eco57I	CTGAAG	1 cut(s)	270
FaiI	YATR	3 cut(s)	156, 258, 288
FauI	CCCGC	1 cut(s)	134
Fnu4HI	GCNGC	2 cut(s)	242, 245
FokI	GGATG	2 cut(s)	14, 227
Fsp4HI	GCNGC	2 cut(s)	242, 245
GluI	GCNGC	2 cut(s)	242, 245
HapII	CCGG	1 cut(s)	136
HinfI	GANTC	4 cut(s)	35, 94, 162, 235
HpaII	CCGG	1 cut(s)	136
Hpy166II	GTNNAC	1 cut(s)	85
Hpy188I	TCNGA	1 cut(s)	78
Hpy8I	GTNNAC	1 cut(s)	85
HpyCH4III	ACNGT	1 cut(s)	130
HpyCH4IV	ACGT	1 cut(s)	54
HpyCH4V	TGCA	5 cut(s)	20, 126, 158, 188, 205
HpyF10VI	GCNNNNNNNGC	2 cut(s)	132, 238
HpyF3I	CTNAG	1 cut(s)	71
HpySE526I	ACGT	1 cut(s)	54
KspI	CCGCGG	1 cut(s)	172
Kzo9I	GATC	2 cut(s)	225, 266
LpnPI	CCDG	3 cut(s)	149, 195, 261
Lsp1109I	GCAGC	2 cut(s)	253, 256
MaeII	ACGT	1 cut(s)	54
MalI	GATC	2 cut(s)	227, 268
MboI	GATC	2 cut(s)	225, 266
MluCI	AATT	2 cut(s)	182, 273
MlyI	GAGTC	1 cut(s)	44
MmeI	TCCRAC	2 cut(s)	56, 155
MnlI	CCTC	1 cut(s)	80
MslI	CAYNNNNRTG	1 cut(s)	153
MspA1I	CMGCKG	1 cut(s)	171
MspI	CCGG	1 cut(s)	136
MvnI	CGCG	1 cut(s)	171
MwoI	GCNNNNNNNGC	2 cut(s)	132, 238
NdeII	GATC	2 cut(s)	225, 266
PfeI	GAWTC	3 cut(s)	94, 162, 235
PkrI	GCNGC	2 cut(s)	243, 246
PleI	GAGTC	1 cut(s)	43
PpsI	GAGTC	1 cut(s)	43
PstI	CTGCAG	1 cut(s)	22
RseI	CAYNNNNRTG	1 cut(s)	153
SacII	CCGCGG	1 cut(s)	172
SatI	GCNGC	2 cut(s)	242, 245
Sau3AI	GATC	2 cut(s)	225, 266
SchI	GAGTC	1 cut(s)	44
SetI	ASST	4 cut(s)	57, 72, 90, 234
SfcI	CTRYAG	2 cut(s)	18, 89
Sfr303I	CCGCGG	1 cut(s)	172
SgrBI	CCGCGG	1 cut(s)	172
SmiMI	CAYNNNNRTG	1 cut(s)	153
Sse9I	AATT	2 cut(s)	182, 273
SsiI	CCGC	3 cut(s)	141, 169, 171
TaaI	ACNGT	1 cut(s)	130
TaiI	ACGT	1 cut(s)	57
TaqI	TCGA	2 cut(s)	228, 265
TasI	AATT	2 cut(s)	182, 273
TfiI	GAWTC	3 cut(s)	94, 162, 235
TscAI	CASTG	1 cut(s)	133
TseI	GCWGC	2 cut(s)	241, 244
TspDTI	ATGAA	1 cut(s)	35
TspRI	CASTG	1 cut(s)	133
XapI	RAATTY	2 cut(s)	182, 273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.