Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004836

Physical Location & Seq

Genomic Coordinates Forward (+)

68090899 .. 68093359

Gene Structure 2461 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ33875

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGAAGGTCGCTCTCTCTCTCACTCTCTCTCGAAATTGTTGTTTCTCCTCCCAAACAAAAAGCCCCATCGTTTTCATTGTTGTAGGACTTGTGATGGCTTCTTCGAGCAGGAGAAAGAGCAGTGCTAAAGGAGTTGCCTCTCCAAGCTTCTTCAAGGTTGTTGTGGATGAGGCTCTTGAAGATGGGATGCTTGAAATTGAAGGTTATGTTGCGAGGAACTATGAAGATTTCCTGGGATGCTCAGTAGTCCTCACTGATCCGAAAGGTTCTATGTGGCCAATGGAACTCAAAAGGAGCAATGGCAGCGTTTGGTTGAAAAAGGGTTGGCTAGAATTTGCCAACTTTTATTCCCTAAAACAAGGATGCTTCATATTTTTTACCCACAAAGGCTTCGATTCAGGTTTCCAAGTACGTATTTTCAATAAGAGGTGGTTGGAGATAGATTATCCATTCAAATCAAGCCATCAAGAGGATTGCAAGTTTCGTAGAGGAGGTGATGAAGCCTTTACAAGAGCTAAGAGGTTCAAATCCAACCATCCATGTCTTGCTGTCAGAATGCAACCCTCCTACCTGTTAAGGGGTTTGAAATTGAATGCAACCTTTGTGAATGAAAATATCTGTGCAACAGGCGCCACTCGCAAAATCAAGCTACAGATTCCAAATGGGAAAACCTGGTCTGCTAAGTGCTCTGTCTACTTATGCATGAACAAAGACTATGCAAAAATCTGCAGTGGTTGGACAAAGTTTGCGGCAGAAAATAAGCTGCAAGTAGGGGATGCTTGTGCGTTGGAGCTGATAAAGGAGTGCCCTAAACTTACATTCTTGGTTCACATATTCCGAGCTAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

282

Amino Acids

31.9

Weight (kDa)

9.48

Isoelectric Point (pI)

46.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	59 - 142	2e-11	B3 DNA binding domain
B3	PF02362	187 - 282	3.8e-13	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004836)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g13840 FvH4_1g14720 FvH4_2g29240 FvH4_2g29322 FvH4_2g29350 FvH4_3g34770 FvH4_7g25080
malus_domestica	MD05G1037200.v1.1
prunus_persica	Prupe.7G143200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0103581 RchiOBHm_Chr5g0062511
rosa_laevigata	RLG00000017246 RLG00000035562
rosa_multiflora	Rmu_co8088552.1_g000001 Rmu_sc0001530.1_g000008 Rmu_sc0001852.1_g000021 Rmu_sc0004988.1_g000026
rosa_roxburghii	Rroxscaffold_1G00018100 Rroxscaffold_2G00139510
rosa_rugosa	Rorug02G0115900 Rorug05G0350300 Rorug05G0350300
rosa_samantha	Rh2AG164200 Rh2BG171400 Rh2CG170900 Rh2DG169500 Rh5AG410300 Rh5BG424300 Rh5DG438600
rosa_wichuraiana	Rw2G012910 Rw5G038630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	629
AccI	GTMKAC	1 cut(s)	693
AciI	CCGC	1 cut(s)	749
AclWI	GGATC	1 cut(s)	251
AcoI	YGGCCR	1 cut(s)	275
AcsI	RAATTY	1 cut(s)	332
AcyI	GRCGYC	1 cut(s)	630
AfaI	GTAC	1 cut(s)	411
AfiI	CCNNNNNNNGG	2 cut(s)	469, 577
AjnI	CCWGG	2 cut(s)	231, 671
AluBI	AGCT	6 cut(s)	147, 515, 649, 763, 793, 842
AluI	AGCT	6 cut(s)	147, 515, 649, 763, 793, 842
Alw21I	GWGCWC	1 cut(s)	689
AlwI	GGATC	1 cut(s)	251
AoxI	GGCC	1 cut(s)	275
ApeKI	GCWGC	2 cut(s)	303, 763
ApoI	RAATTY	1 cut(s)	332
AspLEI	GCGC	1 cut(s)	632
AsuHPI	GGTGA	1 cut(s)	506
BaeGI	GKGCMC	1 cut(s)	809
BalI	TGGCCA	1 cut(s)	277
BanI	GGYRCC	1 cut(s)	629
Bbv12I	GWGCWC	1 cut(s)	689
BbvI	GCAGC	2 cut(s)	315, 750
BccI	CCATC	5 cut(s)	74, 88, 176, 471, 543
BciT130I	CCWGG	2 cut(s)	233, 673
BfaI	CTAG	1 cut(s)	329
BfmI	CTRYAG	2 cut(s)	650, 727
BfoI	RGCGCY	1 cut(s)	633
BisI	GCNGC	3 cut(s)	304, 750, 764
BlsI	GCNGC	3 cut(s)	305, 751, 765
Bme1390I	CCNGG	2 cut(s)	233, 673
BmiI	GGNNCC	1 cut(s)	631
BmrFI	CCNGG	2 cut(s)	233, 673
BmsI	GCATC	4 cut(s)	177, 227, 353, 766
BsaAI	YACGTR	1 cut(s)	413
BsaHI	GRCGYC	1 cut(s)	630
BsaJI	CCNNGG	1 cut(s)	232
Bsc4I	CCNNNNNNNGG	2 cut(s)	469, 577
Bse3DI	GCAATG	1 cut(s)	304
BseBI	CCWGG	2 cut(s)	233, 673
BseDI	CCNNGG	1 cut(s)	232
BseGI	GGATG	6 cut(s)	172, 192, 242, 368, 535, 781
BseLI	CCNNNNNNNGG	2 cut(s)	469, 577
BseMI	GCAATG	1 cut(s)	304
BseMII	CTCAG	1 cut(s)	255
BseRI	GAGGAG	2 cut(s)	37, 504
BseSI	GKGCMC	1 cut(s)	809
BseXI	GCAGC	2 cut(s)	315, 750
BshFI	GGCC	1 cut(s)	277
BshNI	GGYRCC	1 cut(s)	629
BsiHKAI	GWGCWC	1 cut(s)	689
BslI	CCNNNNNNNGG	2 cut(s)	469, 577
BsmI	GAATGC	2 cut(s)	561, 598
BsnI	GGCC	1 cut(s)	277
Bsp1286I	GDGCHC	2 cut(s)	689, 809
Bsp143I	GATC	1 cut(s)	256
BspACI	CCGC	1 cut(s)	749
BspANI	GGCC	1 cut(s)	277
BspCNI	CTCAG	1 cut(s)	254
BspLI	GGNNCC	1 cut(s)	631
BspMAI	CTGCAG	1 cut(s)	731
BspPI	GGATC	1 cut(s)	251
BspT107I	GGYRCC	1 cut(s)	629
BsrDI	GCAATG	1 cut(s)	304
BssECI	CCNNGG	1 cut(s)	232
BssMI	GATC	1 cut(s)	256
BssNI	GRCGYC	1 cut(s)	630
Bst2UI	CCWGG	2 cut(s)	233, 673
BstACI	GRCGYC	1 cut(s)	630
BstBAI	YACGTR	1 cut(s)	413
BstDEI	CTNAG	3 cut(s)	241, 516, 681
BstF5I	GGATG	6 cut(s)	172, 192, 242, 368, 535, 781
BstH2I	RGCGCY	1 cut(s)	633
BstHHI	GCGC	1 cut(s)	632
BstKTI	GATC	1 cut(s)	259
BstMBI	GATC	1 cut(s)	256
BstMWI	GCNNNNNNNGC	3 cut(s)	303, 629, 636
BstNI	CCWGG	2 cut(s)	233, 673
BstSCI	CCNGG	2 cut(s)	231, 671
BstSFI	CTRYAG	2 cut(s)	650, 727
BstSLI	GKGCMC	1 cut(s)	809
BstSNI	TACGTA	1 cut(s)	413
BstV1I	GCAGC	2 cut(s)	315, 750
BsuRI	GGCC	1 cut(s)	277
BtsCI	GGATG	6 cut(s)	172, 192, 242, 368, 535, 781
BtsI	GCAGTG	2 cut(s)	127, 736
BtsIMutI	CAGTG	3 cut(s)	127, 252, 736
CfoI	GCGC	1 cut(s)	632
CsiI	ACCWGGT	1 cut(s)	671
Csp6I	GTAC	1 cut(s)	410
CviAII	CATG	2 cut(s)	540, 703
CviQI	GTAC	1 cut(s)	410
DdeI	CTNAG	3 cut(s)	241, 516, 681
DinI	GGCGCC	1 cut(s)	631
DpnI	GATC	1 cut(s)	258
DpnII	GATC	1 cut(s)	256
EaeI	YGGCCR	1 cut(s)	275
Eco105I	TACGTA	1 cut(s)	413
EcoRII	CCWGG	2 cut(s)	231, 671
EcoT22I	ATGCAT	1 cut(s)	704
EgeI	GGCGCC	1 cut(s)	631
EheI	GGCGCC	1 cut(s)	631
FaeI	CATG	2 cut(s)	543, 706
FaiI	YATR	9 cut(s)	207, 222, 272, 371, 541, 700, 704, 717, 833
FatI	CATG	2 cut(s)	539, 702
FblI	GTMKAC	1 cut(s)	693
Fnu4HI	GCNGC	3 cut(s)	304, 750, 764
FokI	GGATG	6 cut(s)	179, 199, 249, 375, 522, 788
Fsp4HI	GCNGC	3 cut(s)	304, 750, 764
FspBI	CTAG	1 cut(s)	329
GlaI	GCGC	1 cut(s)	631
GluI	GCNGC	3 cut(s)	304, 750, 764
HaeII	RGCGCY	1 cut(s)	633
HaeIII	GGCC	1 cut(s)	277
HhaI	GCGC	1 cut(s)	632
Hin1I	GRCGYC	1 cut(s)	630
Hin1II	CATG	2 cut(s)	543, 706
Hin6I	GCGC	1 cut(s)	630
HinP1I	GCGC	1 cut(s)	630
HindIII	AAGCTT	1 cut(s)	145
HinfI	GANTC	2 cut(s)	395, 655
HphI	GGTGA	1 cut(s)	506
Hpy166II	GTNNAC	2 cut(s)	694, 829
Hpy188I	TCNGA	3 cut(s)	261, 554, 839
Hpy188III	TCNNGA	3 cut(s)	30, 176, 467
Hpy8I	GTNNAC	2 cut(s)	694, 829
HpyAV	CCTTC	1 cut(s)	194
HpyCH4IV	ACGT	1 cut(s)	412
HpyCH4V	TGCA	8 cut(s)	477, 559, 596, 623, 702, 719, 729, 766
HpyF10VI	GCNNNNNNNGC	3 cut(s)	303, 629, 636
HpyF3I	CTNAG	3 cut(s)	241, 516, 681
HpySE526I	ACGT	1 cut(s)	412
Hsp92I	GRCGYC	1 cut(s)	630
Hsp92II	CATG	2 cut(s)	543, 706
HspAI	GCGC	1 cut(s)	630
KasI	GGCGCC	1 cut(s)	629
Kzo9I	GATC	1 cut(s)	256
LmnI	GCTCC	2 cut(s)	294, 790
LpnPI	CCDG	8 cut(s)	94, 218, 245, 384, 584, 612, 658, 685
Lsp1109I	GCAGC	2 cut(s)	315, 750
LweI	GCATC	4 cut(s)	177, 227, 353, 766
MabI	ACCWGGT	1 cut(s)	671
MaeI	CTAG	1 cut(s)	329
MaeII	ACGT	1 cut(s)	412
MalI	GATC	1 cut(s)	258
MboI	GATC	1 cut(s)	256
MboII	GAAGA	4 cut(s)	93, 142, 191, 236
MhlI	GDGCHC	2 cut(s)	689, 809
MlsI	TGGCCA	1 cut(s)	277
MluCI	AATT	4 cut(s)	34, 195, 332, 587
MluNI	TGGCCA	1 cut(s)	277
Mly113I	GGCGCC	1 cut(s)	630
MmeI	TCCRAC	4 cut(s)	414, 555, 716, 768
Mox20I	TGGCCA	1 cut(s)	277
Mph1103I	ATGCAT	1 cut(s)	704
MscI	TGGCCA	1 cut(s)	277
MseI	TTAA	1 cut(s)	575
Msp20I	TGGCCA	1 cut(s)	277
MspR9I	CCNGG	2 cut(s)	233, 673
Mva1269I	GAATGC	2 cut(s)	561, 598
MvaI	CCWGG	2 cut(s)	233, 673
MwoI	GCNNNNNNNGC	3 cut(s)	303, 629, 636
NarI	GGCGCC	1 cut(s)	630
NdeII	GATC	1 cut(s)	256
NlaIII	CATG	2 cut(s)	543, 706
NlaIV	GGNNCC	1 cut(s)	631
NsiI	ATGCAT	1 cut(s)	704
PctI	GAATGC	2 cut(s)	561, 598
PfeI	GAWTC	2 cut(s)	395, 655
PkrI	GCNGC	3 cut(s)	305, 751, 765
PluTI	GGCGCC	1 cut(s)	633
Ppu21I	YACGTR	1 cut(s)	413
Psp6I	CCWGG	2 cut(s)	231, 671
PspGI	CCWGG	2 cut(s)	231, 671
PspN4I	GGNNCC	1 cut(s)	631
PstI	CTGCAG	1 cut(s)	731
RsaI	GTAC	1 cut(s)	411
RsaNI	GTAC	1 cut(s)	410
SaqAI	TTAA	1 cut(s)	575
SatI	GCNGC	3 cut(s)	304, 750, 764
Sau3AI	GATC	1 cut(s)	256
ScrFI	CCNGG	2 cut(s)	233, 673
SduI	GDGCHC	2 cut(s)	689, 809
SexAI	ACCWGGT	1 cut(s)	671
SfaNI	GCATC	4 cut(s)	177, 227, 353, 766
SfcI	CTRYAG	2 cut(s)	650, 727
SfoI	GGCGCC	1 cut(s)	631
SnaBI	TACGTA	1 cut(s)	413
Sse9I	AATT	4 cut(s)	34, 195, 332, 587
SsiI	CCGC	1 cut(s)	749
SspDI	GGCGCC	1 cut(s)	629
SspMI	CTAG	1 cut(s)	329
StyD4I	CCNGG	2 cut(s)	231, 671
TaiI	ACGT	1 cut(s)	415
TaqI	TCGA	3 cut(s)	31, 104, 393
TasI	AATT	4 cut(s)	34, 195, 332, 587
TauI	GCSGC	1 cut(s)	752
TfiI	GAWTC	2 cut(s)	395, 655
Tru1I	TTAA	1 cut(s)	575
Tru9I	TTAA	1 cut(s)	575
TscAI	CASTG	3 cut(s)	127, 259, 736
TseI	GCWGC	2 cut(s)	303, 763
TspDTI	ATGAA	7 cut(s)	17, 64, 237, 358, 513, 624, 719
TspRI	CASTG	3 cut(s)	127, 259, 736
XapI	RAATTY	1 cut(s)	332
XmiI	GTMKAC	1 cut(s)	693
XspI	CTAG	1 cut(s)	329
Zsp2I	ATGCAT	1 cut(s)	704

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.