FvH4_1g16080

Converts zeaxanthin into antheraxanthin and subsequently violaxanthin

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Reverse (-)
9159966 .. 9165782
5817 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g16080.t4

Sequence Viewer

Length: 1497 bp
ATGACTGAGTTGGTTATCAGGTATGTCAAGTTTGACACATTCACTCCTGCAGCGGAACGGGGGCTTCCGGTTACCAGAGTCATAAGCCGAATGTTGTTGCAGCAAATCCTTGCTGGTGCTGTTGGTGATGAGATTATTTTTAATGGAAGTAACGTGGTTGATTTTCAGGATCTTGGAAACAAGGTTAATGTTGTACTTGAGAATGGAGAGTGTTACGAAGGTGATCTTCTGGTTGGAGCTGATGGTATCTGGTCGAAGGTAAGGAAGAACTTATTTGGACTAGAGGAAGCTGTGTACTCGGGTTATACTTGTTATACTGGTATAACAGATTTTGTGCCTGCTGACATTAGTTCTGTAGGGTATCGAGTATTTCTGGGGCACAAACAATACTTTGTTTCTTCAGACGTAGGTGCAGGAAAGATGCAGTGGTATGCATTTCACAAGGAACCAGCTGGTGGTGCTGATGCCCCCAATGGTAAAAAGGAAAGGTTGCTTAAAATATTTGGTGGCTGGTGTGATAATGTGGTAGATTTGCTACTTGCCACAGAGGAAGATGCAATTCTACGACGCGACATATATGATAGGACCCCAACTTTAACCTGGGGAAAGGGTAATGTCACCTTGCTTGGAGATTCTGTCCATGCTATGCAGCCAAATTTGGGTCAAGGGGGTTGCATGGCCATTGAGGATGGTTATCAACTTGCATTGGAACTTGAAAAAGCTTTGAAGAAAAGCCATGAACTCGGAACTCCTCCTGACATTGCTGCTTCTTTAAGAAGCTATGAGACCTCTAGAAAACTACGGGTTGCCATTATTCATGGAATGGCTAGAATGGCTGCAATTATGGCTTCAACTTACAAGGCTTATCTGGGTGTAGGACTTGGTCCATTATCGTTTTTGACGAAGTTTCGGATACCACATCCAGGAAGAGTTGGTGGGAGAATTTTTATTGACAAGGCAATGCCCTTGATGCTGAGTTGGGTCCTAGGTGGTAACAGCTCAAAACTTGAAGGAAGGCCACCAAGTTGCAGGCTCTCAGACAAAGCTGATGATCAGTTACGAAGTTGGTTTGAGGACGATGATGCACTGGAGCGTGCTATTGATGGAGAGTGGTATCTGATACCTTGTGGACAAGAAAATGGTGCTTCGCAACTTATACGTTTAAACAGAGATGAGAAAATCACCTGCATAATTGGGAACACCTCAAATGGGGATTCTTCACGAATAACGGTTCCTTTACCCCAGGTTTCAGAAAATCATGCTTGTATCACCTACAAGGATGGTGGCTTTTACGTGTCTGATTTGGGAAGCAAACATGGTACCTGGCTCGCAGATATTGAGGAGAAGCGGTACCGGGTACCTCCAAATTTTGCAGTTCGTTTCCACCCCTCAGACGTTATCGAGATTGGTCCTGGGCAGAAGGTAGCATTTAGGGTAAAAGTTATGCAGGCTACTCCAAGGAGTCCTGAAAAGGATGGAATTCTTCAGGCAGCGTAA
Functional Annotation

Protein Analysis

499

Amino Acids

54.77

Weight (kDa)

6.06

Isoelectric Point (pI)

35.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_3 PF01494 193 - 236 2.5e-06 FAD binding domain
FHA PF00498 391 - 463 7.4e-11 FHA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1193
Acc36I ACCTGC 1 cut(s) 1193
Acc65I GGTACC 3 cut(s) 1319, 1350, 1357
AccB1I GGYRCC 3 cut(s) 1319, 1350, 1357
AccB7I CCANNNNNTGG 1 cut(s) 455
AccII CGCG 1 cut(s) 570
AciI CCGC 2 cut(s) 53, 1348
AclWI GGATC 1 cut(s) 177
AcoI YGGCCR 1 cut(s) 678
AcsI RAATTY 4 cut(s) 655, 942, 1366, 1479
AcuI CTGAAG 2 cut(s) 384, 1469
AfaI GTAC 5 cut(s) 195, 296, 1321, 1352, 1359
AfiI CCNNNNNNNGG 4 cut(s) 455, 659, 923, 1209
AflIII ACRYGT 1 cut(s) 1293
AgsI TTSAA 4 cut(s) 716, 727, 852, 1010
AjnI CCWGG 5 cut(s) 599, 922, 1242, 1322, 1411
AluBI AGCT 7 cut(s) 239, 290, 452, 722, 780, 999, 1046
AluI AGCT 7 cut(s) 239, 290, 452, 722, 780, 999, 1046
Alw26I GTCTC 1 cut(s) 779
AlwI GGATC 1 cut(s) 177
Ama87I CYCGRG 1 cut(s) 298
AoxI GGCC 2 cut(s) 678, 1016
ApeKI GCWGC 6 cut(s) 50, 100, 649, 764, 836, 1490
ApoI RAATTY 4 cut(s) 655, 942, 1366, 1479
Asp718I GGTACC 3 cut(s) 1319, 1350, 1357
AspA2I CCTAGG 1 cut(s) 985
AspS9I GGNCC 4 cut(s) 585, 884, 982, 1409
AsuC2I CCSGG 1 cut(s) 1355
AsuHPI GGTGA 5 cut(s) 137, 233, 610, 1174, 1261
AvaI CYCGRG 1 cut(s) 298
AvaII GGWCC 4 cut(s) 585, 884, 982, 1409
AvrII CCTAGG 1 cut(s) 985
BaeGI GKGCMC 1 cut(s) 381
BalI TGGCCA 1 cut(s) 680
BanI GGYRCC 3 cut(s) 1319, 1350, 1357
BbvI GCAGC 5 cut(s) 62, 112, 661, 751, 823
BccI CCATC 5 cut(s) 236, 683, 1097, 1274, 1469
BciT130I CCWGG 5 cut(s) 601, 924, 1244, 1324, 1413
BciVI GTATCC 1 cut(s) 906
BclI TGATCA 1 cut(s) 1051
BcnI CCSGG 1 cut(s) 1355
BcoDI GTCTC 1 cut(s) 779
BfaI CTAG 4 cut(s) 281, 792, 828, 986
BfmI CTRYAG 2 cut(s) 48, 354
BfuAI ACCTGC 1 cut(s) 1193
BfuI GTATCC 1 cut(s) 906
BisI GCNGC 6 cut(s) 51, 101, 650, 765, 837, 1491
BlnI CCTAGG 1 cut(s) 985
BlsI GCNGC 6 cut(s) 52, 102, 651, 766, 838, 1492
Bme1390I CCNGG 6 cut(s) 601, 924, 1244, 1324, 1355, 1413
Bme18I GGWCC 4 cut(s) 585, 884, 982, 1409
BmeT110I CYCGRG 1 cut(s) 298
BmgT120I GGNCC 4 cut(s) 585, 884, 982, 1409
BmiI GGNNCC 7 cut(s) 447, 587, 983, 1233, 1321, 1352, 1359
BmrFI CCNGG 6 cut(s) 601, 924, 1244, 1324, 1355, 1413
BmsI GCATC 5 cut(s) 411, 454, 544, 960, 1072
BpmI CTGGAG 1 cut(s) 1109
BpuEI CTTGAG 1 cut(s) 218
BpuMI CCSGG 1 cut(s) 1355
BsaAI YACGTR 1 cut(s) 1294
BsaBI GATNNNNATC 1 cut(s) 693
BsaI GGTCTC 1 cut(s) 779
BsaJI CCNNGG 5 cut(s) 600, 985, 1242, 1412, 1457
BsaWI WCCGGW 1 cut(s) 67
BsaXI ACNNNNNCTCC 6 cut(s) 28, 58, 621, 651, 1334, 1364
Bsc4I CCNNNNNNNGG 4 cut(s) 455, 659, 923, 1209
Bse1I ACTGG 2 cut(s) 322, 1092
Bse3DI GCAATG 2 cut(s) 759, 966
Bse8I GATNNNNATC 1 cut(s) 693
BseBI CCWGG 5 cut(s) 601, 924, 1244, 1324, 1413
BseDI CCNNGG 5 cut(s) 600, 985, 1242, 1412, 1457
BseGI GGATG 4 cut(s) 694, 919, 1285, 1480
BseJI GATNNNNATC 1 cut(s) 693
BseLI CCNNNNNNNGG 4 cut(s) 455, 659, 923, 1209
BseMI GCAATG 2 cut(s) 759, 966
BseMII CTCAG 3 cut(s) 965, 1050, 1404
BseNI ACTGG 2 cut(s) 322, 1092
BseRI GAGGAG 2 cut(s) 741, 1355
BseSI GKGCMC 1 cut(s) 381
BseXI GCAGC 5 cut(s) 62, 112, 661, 751, 823
BsgI GTGCAG 1 cut(s) 432
Bsh1236I CGCG 1 cut(s) 570
BshFI GGCC 2 cut(s) 680, 1018
BshNI GGYRCC 3 cut(s) 1319, 1350, 1357
BsiHKCI CYCGRG 1 cut(s) 298
BsiSI CCGG 2 cut(s) 68, 1354
BslI CCNNNNNNNGG 4 cut(s) 455, 659, 923, 1209
BsmAI GTCTC 1 cut(s) 779
BsnI GGCC 2 cut(s) 680, 1018
Bso31I GGTCTC 1 cut(s) 779
BsoBI CYCGRG 1 cut(s) 298
Bsp1286I GDGCHC 1 cut(s) 381
Bsp143I GATC 3 cut(s) 169, 223, 1051
BspACI CCGC 2 cut(s) 53, 1348
BspANI GGCC 2 cut(s) 680, 1018
BspCNI CTCAG 3 cut(s) 966, 1049, 1403
BspFNI CGCG 1 cut(s) 570
BspLI GGNNCC 7 cut(s) 447, 587, 983, 1233, 1321, 1352, 1359
BspMAI CTGCAG 1 cut(s) 52
BspMI ACCTGC 1 cut(s) 1193
BspPI GGATC 1 cut(s) 177
BspT107I GGYRCC 3 cut(s) 1319, 1350, 1357
BspTNI GGTCTC 1 cut(s) 779
BsrDI GCAATG 2 cut(s) 759, 966
BsrI ACTGG 2 cut(s) 322, 1092
BssECI CCNNGG 5 cut(s) 600, 985, 1242, 1412, 1457
BssMI GATC 3 cut(s) 169, 223, 1051
BssT1I CCWWGG 2 cut(s) 985, 1457
Bst2UI CCWGG 5 cut(s) 601, 924, 1244, 1324, 1413
Bst4CI ACNGT 1 cut(s) 1231
Bst6I CTCTTC 1 cut(s) 922
BstBAI YACGTR 1 cut(s) 1294
BstC8I GCNNGC 5 cut(s) 339, 1031, 1095, 1329, 1449
BstDEI CTNAG 4 cut(s) 6, 974, 1036, 1390
BstEII GGTNACC 1 cut(s) 70
BstF5I GGATG 4 cut(s) 694, 919, 1285, 1480
BstFNI CGCG 1 cut(s) 570
BstKTI GATC 3 cut(s) 172, 226, 1054
BstMAI GTCTC 1 cut(s) 779
BstMBI GATC 3 cut(s) 169, 223, 1051
BstMWI GCNNNNNNNGC 4 cut(s) 458, 833, 845, 970
BstNI CCWGG 5 cut(s) 601, 924, 1244, 1324, 1413
BstPI GGTNACC 1 cut(s) 70
BstSCI CCNGG 6 cut(s) 599, 922, 1242, 1322, 1353, 1411
BstSFI CTRYAG 2 cut(s) 48, 354
BstSLI GKGCMC 1 cut(s) 381
BstUI CGCG 1 cut(s) 570
BstV1I GCAGC 5 cut(s) 62, 112, 661, 751, 823
BstX2I RGATCY 1 cut(s) 169
BstYI RGATCY 1 cut(s) 169
BsuI GTATCC 1 cut(s) 906
BsuRI GGCC 2 cut(s) 680, 1018
BtsCI GGATG 4 cut(s) 694, 919, 1285, 1480
BtsI GCAGTG 1 cut(s) 431
BtsIMutI CAGTG 2 cut(s) 431, 1085
BveI ACCTGC 1 cut(s) 1193
Cac8I GCNNGC 5 cut(s) 339, 1031, 1095, 1329, 1449
Cfr13I GGNCC 4 cut(s) 585, 884, 982, 1409
CseI GACGC 1 cut(s) 576
Csp6I GTAC 5 cut(s) 194, 295, 1320, 1351, 1358
CspCI CAANNNNNGTGG 2 cut(s) 1264, 1299
CviAII CATG 6 cut(s) 641, 676, 737, 818, 1259, 1316
CviQI GTAC 5 cut(s) 194, 295, 1320, 1351, 1358
DdeI CTNAG 4 cut(s) 6, 974, 1036, 1390
DpnI GATC 3 cut(s) 171, 225, 1053
DpnII GATC 3 cut(s) 169, 223, 1051
DraI TTTAAA 1 cut(s) 1164
EaeI YGGCCR 1 cut(s) 678
Eam1104I CTCTTC 1 cut(s) 922
EarI CTCTTC 1 cut(s) 922
Eco130I CCWWGG 2 cut(s) 985, 1457
Eco31I GGTCTC 1 cut(s) 779
Eco47I GGWCC 4 cut(s) 585, 884, 982, 1409
Eco57I CTGAAG 2 cut(s) 384, 1469
Eco88I CYCGRG 1 cut(s) 298
Eco91I GGTNACC 1 cut(s) 70
EcoO109I RGGNCCY 2 cut(s) 585, 982
EcoO65I GGTNACC 1 cut(s) 70
EcoRI GAATTC 1 cut(s) 1479
EcoRII CCWGG 5 cut(s) 599, 922, 1242, 1322, 1411
EcoT14I CCWWGG 2 cut(s) 985, 1457
EcoT22I ATGCAT 1 cut(s) 436
ErhI CCWWGG 2 cut(s) 985, 1457
FaeI CATG 6 cut(s) 644, 679, 740, 821, 1262, 1319
FalI AAGNNNNNCTT 2 cut(s) 210, 242
FatI CATG 6 cut(s) 640, 675, 736, 817, 1258, 1315
FbaI TGATCA 1 cut(s) 1051
Fnu4HI GCNGC 6 cut(s) 51, 101, 650, 765, 837, 1491
FokI GGATG 4 cut(s) 701, 906, 1292, 1487
Fsp4HI GCNGC 6 cut(s) 51, 101, 650, 765, 837, 1491
FspBI CTAG 4 cut(s) 281, 792, 828, 986
GluI GCNGC 6 cut(s) 51, 101, 650, 765, 837, 1491
GsuI CTGGAG 1 cut(s) 1109
HaeIII GGCC 2 cut(s) 680, 1018
HapII CCGG 2 cut(s) 68, 1354
HgaI GACGC 1 cut(s) 576
Hin1II CATG 6 cut(s) 644, 679, 740, 821, 1262, 1319
HindIII AAGCTT 1 cut(s) 720
HinfI GANTC 4 cut(s) 78, 632, 1214, 1462
HpaII CCGG 2 cut(s) 68, 1354
HphI GGTGA 5 cut(s) 137, 233, 610, 1174, 1261
Hpy166II GTNNAC 2 cut(s) 295, 1130
Hpy188I TCNGA 8 cut(s) 403, 746, 912, 1039, 1119, 1252, 1300, 1393
Hpy188III TCNNGA 6 cut(s) 167, 755, 792, 1221, 1402, 1466
Hpy8I GTNNAC 2 cut(s) 295, 1130
Hpy99I CGWCG 1 cut(s) 570
HpyAV CCTTC 5 cut(s) 212, 250, 1004, 1008, 1414
HpyCH4III ACNGT 1 cut(s) 1231
HpyCH4IV ACGT 5 cut(s) 153, 405, 1159, 1293, 1395
HpyF10VI GCNNNNNNNGC 4 cut(s) 458, 833, 845, 970
HpyF3I CTNAG 4 cut(s) 6, 974, 1036, 1390
HpySE526I ACGT 5 cut(s) 153, 405, 1159, 1293, 1395
Hsp92II CATG 6 cut(s) 644, 679, 740, 821, 1262, 1319
KpnI GGTACC 3 cut(s) 1323, 1354, 1361
Ksp22I TGATCA 1 cut(s) 1051
Kzo9I GATC 3 cut(s) 169, 223, 1051
LmnI GCTCC 2 cut(s) 236, 1090
Lsp1109I GCAGC 5 cut(s) 62, 112, 661, 751, 823
LweI GCATC 5 cut(s) 411, 454, 544, 960, 1072
MaeI CTAG 4 cut(s) 281, 792, 828, 986
MaeII ACGT 5 cut(s) 153, 405, 1159, 1293, 1395
MaeIII GTNAC 6 cut(s) 70, 149, 212, 616, 992, 1056
MalI GATC 3 cut(s) 171, 225, 1053
MboI GATC 3 cut(s) 169, 223, 1051
MboII GAAGA 8 cut(s) 218, 277, 390, 563, 739, 939, 1209, 1475
MflI RGATCY 1 cut(s) 169
MhlI GDGCHC 1 cut(s) 381
MlsI TGGCCA 1 cut(s) 680
MluCI AATT 7 cut(s) 558, 655, 840, 942, 1191, 1366, 1479
MluNI TGGCCA 1 cut(s) 680
MlyI GAGTC 2 cut(s) 87, 1471
MmeI TCCRAC 1 cut(s) 214
Mox20I TGGCCA 1 cut(s) 680
Mph1103I ATGCAT 1 cut(s) 436
MscI TGGCCA 1 cut(s) 680
MseI TTAA 6 cut(s) 141, 186, 495, 596, 773, 1163
Msp20I TGGCCA 1 cut(s) 680
MspA1I CMGCKG 2 cut(s) 53, 452
MspI CCGG 2 cut(s) 68, 1354
MspR9I CCNGG 6 cut(s) 601, 924, 1244, 1324, 1355, 1413
MssI GTTTAAAC 1 cut(s) 1164
MvaI CCWGG 5 cut(s) 601, 924, 1244, 1324, 1413
MvnI CGCG 1 cut(s) 570
MwoI GCNNNNNNNGC 4 cut(s) 458, 833, 845, 970
NciI CCSGG 1 cut(s) 1355
NdeII GATC 3 cut(s) 169, 223, 1051
NlaIII CATG 6 cut(s) 644, 679, 740, 821, 1262, 1319
NlaIV GGNNCC 7 cut(s) 447, 587, 983, 1233, 1321, 1352, 1359
NmuCI GTSAC 1 cut(s) 616
NsiI ATGCAT 1 cut(s) 436
PaqCI CACCTGC 1 cut(s) 1193
PcsI WCGNNNNNNNCGW 1 cut(s) 899
PfeI GAWTC 2 cut(s) 632, 1214
PflFI GACNNNGTC 1 cut(s) 882
PflMI CCANNNNNTGG 1 cut(s) 455
PfoI TCCNGGA 1 cut(s) 922
PkrI GCNGC 6 cut(s) 52, 102, 651, 766, 838, 1492
PleI GAGTC 2 cut(s) 86, 1470
PmeI GTTTAAAC 1 cut(s) 1164
PpsI GAGTC 2 cut(s) 86, 1470
Ppu21I YACGTR 1 cut(s) 1294
PpuMI RGGWCCY 2 cut(s) 585, 982
Psp5II RGGWCCY 2 cut(s) 585, 982
Psp6I CCWGG 5 cut(s) 599, 922, 1242, 1322, 1411
PspEI GGTNACC 1 cut(s) 70
PspGI CCWGG 5 cut(s) 599, 922, 1242, 1322, 1411
PspN4I GGNNCC 7 cut(s) 447, 587, 983, 1233, 1321, 1352, 1359
PspPI GGNCC 4 cut(s) 585, 884, 982, 1409
PspPPI RGGWCCY 2 cut(s) 585, 982
PstI CTGCAG 1 cut(s) 52
PsuI RGATCY 1 cut(s) 169
PsyI GACNNNGTC 1 cut(s) 882
PvuII CAGCTG 1 cut(s) 452
RsaI GTAC 5 cut(s) 195, 296, 1321, 1352, 1359
RsaNI GTAC 5 cut(s) 194, 295, 1320, 1351, 1358
SaqAI TTAA 6 cut(s) 141, 186, 495, 596, 773, 1163
SatI GCNGC 6 cut(s) 51, 101, 650, 765, 837, 1491
Sau3AI GATC 3 cut(s) 169, 223, 1051
Sau96I GGNCC 4 cut(s) 585, 884, 982, 1409
SchI GAGTC 2 cut(s) 87, 1471
ScrFI CCNGG 6 cut(s) 601, 924, 1244, 1324, 1355, 1413
SduI GDGCHC 1 cut(s) 381
SfaNI GCATC 5 cut(s) 411, 454, 544, 960, 1072
SfcI CTRYAG 2 cut(s) 48, 354
SinI GGWCC 4 cut(s) 585, 884, 982, 1409
SmlI CTYRAG 1 cut(s) 197
SmoI CTYRAG 1 cut(s) 197
Sse9I AATT 7 cut(s) 558, 655, 840, 942, 1191, 1366, 1479
SsiI CCGC 2 cut(s) 53, 1348
SspI AATATT 1 cut(s) 501
SspMI CTAG 4 cut(s) 281, 792, 828, 986
StyD4I CCNGG 6 cut(s) 599, 922, 1242, 1322, 1353, 1411
StyI CCWWGG 2 cut(s) 985, 1457
TaaI ACNGT 1 cut(s) 1231
TaiI ACGT 5 cut(s) 156, 408, 1162, 1296, 1398
TaqI TCGA 3 cut(s) 254, 364, 1401
TasI AATT 7 cut(s) 558, 655, 840, 942, 1191, 1366, 1479
TatI WGTACW 2 cut(s) 193, 294
TfiI GAWTC 2 cut(s) 632, 1214
Tru1I TTAA 6 cut(s) 141, 186, 495, 596, 773, 1163
Tru9I TTAA 6 cut(s) 141, 186, 495, 596, 773, 1163
TscAI CASTG 2 cut(s) 431, 1092
TseFI GTSAC 1 cut(s) 616
TseI GCWGC 6 cut(s) 50, 100, 649, 764, 836, 1490
Tsp45I GTSAC 1 cut(s) 616
TspDTI ATGAA 2 cut(s) 753, 806
TspRI CASTG 2 cut(s) 431, 1092
Tth111I GACNNNGTC 1 cut(s) 882
Van91I CCANNNNNTGG 1 cut(s) 455
VpaK11BI GGWCC 4 cut(s) 585, 884, 982, 1409
XapI RAATTY 4 cut(s) 655, 942, 1366, 1479
XbaI TCTAGA 1 cut(s) 791
XcmI CCANNNNNNNNNTGG 1 cut(s) 597
XmaJI CCTAGG 1 cut(s) 985
XspI CTAG 4 cut(s) 281, 792, 828, 986
Zsp2I ATGCAT 1 cut(s) 436
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.