Rorug02G0129500

Converts zeaxanthin into antheraxanthin and subsequently violaxanthin

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Forward (+)
11164247 .. 11164594
348 bp
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UTR
Exon/CDS
Intron
Rorug02G0129500.1

Sequence Viewer

Length: 348 bp
ATGACATCGAAACTTCATTCTAATTATCAGCAGTATCTGCTTGATCATAGATGTAAGACAGGTGTTGACATTGGTCATTTGGCTACTAGGGTTCTGAAGAAACCGATATTGGAGAAGAGCAGCCTGGTGGAGTTGGCGGGTGAAGTTGGCATGGCTATCGAGCCACTAGCAACGTTAGGGGGAAGTGGATCGTCGACTTCTCAGGAACCGAACTGGGATGCCATAGTTTTCTCAGATGAGGAGATCAAGTATGCAATTTATGATGTCTATACTTCTTATGTTATTGGAAACAAGCTCTTGGGATGCTTTAACAAGTTTCTGTTTCTCCACCACATTATGATAAAATAA
Functional Annotation

Protein Analysis

115

Amino Acids

12.85

Weight (kDa)

6.5

Isoelectric Point (pI)

33.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 194
AciI CCGC 1 cut(s) 137
AclI AACGTT 1 cut(s) 173
AclWI GGATC 1 cut(s) 196
AcuI CTGAAG 1 cut(s) 116
AjnI CCWGG 1 cut(s) 123
AjuI GAANNNNNNNTTGG 2 cut(s) 92, 124
AluBI AGCT 1 cut(s) 295
AluI AGCT 1 cut(s) 295
AlwI GGATC 1 cut(s) 196
AlwNI CAGNNNCTG 1 cut(s) 37
ApeKI GCWGC 1 cut(s) 120
AsuHPI GGTGA 1 cut(s) 152
BbvI GCAGC 1 cut(s) 132
BcgI CGANNNNNNTGC 2 cut(s) 139, 173
BciT130I CCWGG 1 cut(s) 125
BclI TGATCA 1 cut(s) 43
BfaI CTAG 2 cut(s) 87, 167
BisI GCNGC 1 cut(s) 121
BlsI GCNGC 1 cut(s) 122
Bme1390I CCNGG 1 cut(s) 125
BmiI GGNNCC 1 cut(s) 207
BmrFI CCNGG 1 cut(s) 125
BmrI ACTGGG 1 cut(s) 223
BmsI GCATC 2 cut(s) 208, 293
BmuI ACTGGG 1 cut(s) 223
BoxI GACNNNNGTC 1 cut(s) 72
BsaXI ACNNNNNCTCC 2 cut(s) 233, 263
Bse1I ACTGG 1 cut(s) 218
BseBI CCWGG 1 cut(s) 125
BseGI GGATG 2 cut(s) 223, 308
BseMII CTCAG 2 cut(s) 215, 246
BseNI ACTGG 1 cut(s) 218
BseRI GAGGAG 1 cut(s) 254
BseXI GCAGC 1 cut(s) 132
Bsp143I GATC 3 cut(s) 43, 188, 243
BspACI CCGC 1 cut(s) 137
BspCNI CTCAG 2 cut(s) 214, 245
BspLI GGNNCC 1 cut(s) 207
BspPI GGATC 1 cut(s) 196
BspQI GCTCTTC 1 cut(s) 110
BsrI ACTGG 1 cut(s) 218
BssMI GATC 3 cut(s) 43, 188, 243
Bst2UI CCWGG 1 cut(s) 125
Bst6I CTCTTC 1 cut(s) 110
BstAPI GCANNNNNTGC 1 cut(s) 37
BstDEI CTNAG 2 cut(s) 201, 232
BstF5I GGATG 2 cut(s) 223, 308
BstKTI GATC 3 cut(s) 46, 191, 246
BstMBI GATC 3 cut(s) 43, 188, 243
BstMWI GCNNNNNNNGC 1 cut(s) 37
BstNI CCWGG 1 cut(s) 125
BstPAI GACNNNNGTC 1 cut(s) 72
BstSCI CCNGG 1 cut(s) 123
BstV1I GCAGC 1 cut(s) 132
BtsCI GGATG 2 cut(s) 223, 308
CaiI CAGNNNCTG 1 cut(s) 37
CviAII CATG 1 cut(s) 151
CviJI RGCY 5 cut(s) 83, 123, 155, 163, 295
CviKI_1 RGCY 5 cut(s) 83, 123, 155, 163, 295
DdeI CTNAG 2 cut(s) 201, 232
DpnI GATC 3 cut(s) 45, 190, 245
DpnII GATC 3 cut(s) 43, 188, 243
Eam1104I CTCTTC 1 cut(s) 110
EarI CTCTTC 1 cut(s) 110
Eco57I CTGAAG 1 cut(s) 116
EcoRII CCWGG 1 cut(s) 123
FaeI CATG 1 cut(s) 154
FaiI YATR 8 cut(s) 48, 152, 224, 252, 261, 270, 279, 338
FatI CATG 1 cut(s) 150
FauI CCCGC 1 cut(s) 130
FbaI TGATCA 1 cut(s) 43
FblI GTMKAC 1 cut(s) 194
Fnu4HI GCNGC 1 cut(s) 121
FokI GGATG 2 cut(s) 230, 315
Fsp4HI GCNGC 1 cut(s) 121
FspBI CTAG 2 cut(s) 87, 167
GluI GCNGC 1 cut(s) 121
Hin1II CATG 1 cut(s) 154
HincII GTYRAC 2 cut(s) 67, 195
HindII GTYRAC 2 cut(s) 67, 195
HphI GGTGA 1 cut(s) 152
Hpy166II GTNNAC 2 cut(s) 67, 195
Hpy188I TCNGA 2 cut(s) 96, 235
Hpy188III TCNNGA 1 cut(s) 203
Hpy8I GTNNAC 2 cut(s) 67, 195
Hpy99I CGWCG 1 cut(s) 196
HpyCH4IV ACGT 1 cut(s) 173
HpyCH4V TGCA 1 cut(s) 254
HpyF10VI GCNNNNNNNGC 1 cut(s) 37
HpyF3I CTNAG 2 cut(s) 201, 232
HpySE526I ACGT 1 cut(s) 173
Hsp92II CATG 1 cut(s) 154
Ksp22I TGATCA 1 cut(s) 43
Kzo9I GATC 3 cut(s) 43, 188, 243
LguI GCTCTTC 1 cut(s) 110
LpnPI CCDG 5 cut(s) 45, 110, 137, 188, 199
Lsp1109I GCAGC 1 cut(s) 132
LweI GCATC 2 cut(s) 208, 293
MaeI CTAG 2 cut(s) 87, 167
MaeII ACGT 1 cut(s) 173
MalI GATC 3 cut(s) 45, 190, 245
MboI GATC 3 cut(s) 43, 188, 243
MboII GAAGA 2 cut(s) 109, 127
MluCI AATT 2 cut(s) 22, 255
MnlI CCTC 1 cut(s) 232
MseI TTAA 1 cut(s) 309
MspR9I CCNGG 1 cut(s) 125
MvaI CCWGG 1 cut(s) 125
MwoI GCNNNNNNNGC 1 cut(s) 37
NdeII GATC 3 cut(s) 43, 188, 243
NlaIII CATG 1 cut(s) 154
NlaIV GGNNCC 1 cut(s) 207
PciSI GCTCTTC 1 cut(s) 110
PkrI GCNGC 1 cut(s) 122
PshAI GACNNNNGTC 1 cut(s) 72
Psp1406I AACGTT 1 cut(s) 173
Psp6I CCWGG 1 cut(s) 123
PspGI CCWGG 1 cut(s) 123
PspN4I GGNNCC 1 cut(s) 207
PstNI CAGNNNCTG 1 cut(s) 37
SalI GTCGAC 1 cut(s) 193
SapI GCTCTTC 1 cut(s) 110
SaqAI TTAA 1 cut(s) 309
SatI GCNGC 1 cut(s) 121
Sau3AI GATC 3 cut(s) 43, 188, 243
ScrFI CCNGG 1 cut(s) 125
SetI ASST 3 cut(s) 64, 176, 297
SfaNI GCATC 2 cut(s) 208, 293
Sse9I AATT 2 cut(s) 22, 255
SsiI CCGC 1 cut(s) 137
SspMI CTAG 2 cut(s) 87, 167
StyD4I CCNGG 1 cut(s) 123
TaiI ACGT 1 cut(s) 176
TaqI TCGA 3 cut(s) 8, 159, 194
TasI AATT 2 cut(s) 22, 255
Tru1I TTAA 1 cut(s) 309
Tru9I TTAA 1 cut(s) 309
TseI GCWGC 1 cut(s) 120
TspDTI ATGAA 1 cut(s) 5
XmiI GTMKAC 1 cut(s) 194
XspI CTAG 2 cut(s) 87, 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.