Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002983

Physical Location & Seq

Genomic Coordinates Forward (+)

56008632 .. 56009235

Gene Structure 604 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ50895

Sequence Viewer

CDS Protein Promoter (2k)

Length: 165 bp

ATGCAATGGTACACATTTCACAAGGAACCAGTTGGTGGTGCTGATGCCCCAAATGGTAAAAAGGAAAGGTTGCTTAAAATATTTGATGGGTGGTGTGATAATGTGGTAGATTTGCTACTTGCCACAGAGGAAGATGCAATTCTACGACGTGACATATATATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009266 GO:0009314 GO:0009408 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009526 GO:0009536 GO:0009540 GO:0009628 GO:0009639 GO:0009687 GO:0009688 GO:0009743 GO:0009756 GO:0009941 GO:0009987 GO:0010033 GO:0010035 GO:0010114 GO:0010182 GO:0016053 GO:0016106 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016122 GO:0016123 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0019752 GO:0023052 GO:0030104 GO:0031967 GO:0031975 GO:0032501 GO:0032787 GO:0042221 GO:0042440 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043289 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046148 GO:0046165 GO:0046394 GO:0048871 GO:0048878 GO:0050789 GO:0050794 GO:0050878 GO:0050891 GO:0050896 GO:0051716 GO:0052662 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071322 GO:0071704 GO:0072330 GO:1901576 GO:1901615 GO:1901617 GO:1901700 GO:1901701 GO:1902644 GO:1902645

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

FAD_binding_3 FHA NAD_binding_8

Protein Analysis

54

Amino Acids

6.27

Weight (kDa)

4.83

Isoelectric Point (pI)

50.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002983)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67030 AT5G67030
fragaria_vesca	FvH4_1g16080 FvH4_1g16080 FvH4_1g16080 FvH4_1g16080 FvH4_1g16080
malus_domestica	MD02G1172400.v1.1 MD15G1284500.v1.1
prunus_persica	Prupe.7G133100_v2.0.a1 Prupe.7G133100_v2.0.a1
pyrus_communis	pycom02g13890 pycom15g24720
rosa_chinensis	RchiOBHm_Chr2g0105701 RchiOBHm_Chr2g0138261 RchiOBHm_Chr5g0062971 RchiOBHm_Chr5g0062981
rosa_laevigata	RLG00000006425 RLG00000017450
rosa_multiflora	Rmu_sc0001051.1_g000057
rosa_roxburghii	Rroxscaffold_2G00137970 Rroxscaffold_2G00137980
rosa_rugosa	Rorug02G0129300 Rorug02G0129400 Rorug02G0129500 Rorug02G0129600
rosa_samantha	Rh2AG181000 Rh2BG190100 Rh2CG185200 Rh2DG187000 Rh4DG142500 Rh7AG320600 Rh7AG325500 Rh7BG187500 Rh7CG337400 Rh7CG342700
rosa_wichuraiana	Rw2G014150 Rw2G041180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	35
AfaI	GTAC	1 cut(s)	11
AfiI	CCNNNNNNNGG	1 cut(s)	35
AjiI	CACGTC	1 cut(s)	149
BccI	CCATC	1 cut(s)	80
BmgBI	CACGTC	1 cut(s)	149
BmiI	GGNNCC	1 cut(s)	27
BmsI	GCATC	2 cut(s)	34, 124
Bsc4I	CCNNNNNNNGG	1 cut(s)	35
Bse1I	ACTGG	1 cut(s)	29
Bse3DI	GCAATG	1 cut(s)	11
BseLI	CCNNNNNNNGG	1 cut(s)	35
BseMI	GCAATG	1 cut(s)	11
BseNI	ACTGG	1 cut(s)	29
BslI	CCNNNNNNNGG	1 cut(s)	35
BspLI	GGNNCC	1 cut(s)	27
BsrDI	GCAATG	1 cut(s)	11
BsrI	ACTGG	1 cut(s)	29
BtrI	CACGTC	1 cut(s)	149
Csp6I	GTAC	1 cut(s)	10
CviQI	GTAC	1 cut(s)	10
FaiI	YATR	5 cut(s)	155, 157, 159, 161, 163
Hpy166II	GTNNAC	1 cut(s)	12
Hpy8I	GTNNAC	1 cut(s)	12
Hpy99I	CGWCG	1 cut(s)	150
HpyCH4IV	ACGT	1 cut(s)	148
HpyCH4V	TGCA	2 cut(s)	4, 137
HpySE526I	ACGT	1 cut(s)	148
LpnPI	CCDG	1 cut(s)	42
LweI	GCATC	2 cut(s)	34, 124
MaeII	ACGT	1 cut(s)	148
MaeIII	GTNAC	1 cut(s)	149
MboII	GAAGA	1 cut(s)	143
MluCI	AATT	1 cut(s)	138
MnlI	CCTC	1 cut(s)	121
MseI	TTAA	1 cut(s)	75
NlaIV	GGNNCC	1 cut(s)	27
NmuCI	GTSAC	1 cut(s)	149
PflMI	CCANNNNNTGG	1 cut(s)	35
PspN4I	GGNNCC	1 cut(s)	27
RsaI	GTAC	1 cut(s)	11
RsaNI	GTAC	1 cut(s)	10
SaqAI	TTAA	1 cut(s)	75
SetI	ASST	2 cut(s)	71, 151
SfaNI	GCATC	2 cut(s)	34, 124
SgeI	CNNG	4 cut(s)	34, 41, 131, 161
Sse9I	AATT	1 cut(s)	138
SspI	AATATT	1 cut(s)	81
TaiI	ACGT	1 cut(s)	151
TasI	AATT	1 cut(s)	138
Tru1I	TTAA	1 cut(s)	75
Tru9I	TTAA	1 cut(s)	75
TseFI	GTSAC	1 cut(s)	149
Tsp45I	GTSAC	1 cut(s)	149
Van91I	CCANNNNNTGG	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.