Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0002983

Physical Location & Seq

Genomic Coordinates Reverse (-)

67132226 .. 67134521

Gene Structure 2296 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G041180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGCAAAGTTTGAATCAGAGTCTGAAGAAGAGGAGGAAGAACTCCCAATGATTGCTGCAGAGAAAGAGGAGGCTGTTTATTCGGGTTATACTTGTTATACTGGTATTACAAATTTTGTGCCTGCTGACATTTCTATAGGGTATCGAGTATTTCTAGGGCACAAACAATACTTCTTTTCTTCAGACGTAGGTGCGGGAAAGATGCAATGGTATGCATTTCACAAGGAACCAGCTAGTGGTGCTGATGCCCACAATGCCACCGAGGAAGATGCAATTCTACGACGTGACATATATGATAGGACCCCAACTTTATCCTGGGGAAAGGGTAATGTGACCTTGCTTGGAGATTCTGTCCATGGTATGCAGCCAAATTTGGGTCAAGAGGGATGCATGGCCATTGAGGATGGTTATCAACTTGCGTTGGAGCTCGAAAAAGCTTTGAAGAAAAGCAGTGAAATGGGAACTCCTCCTGACATTGCTGCTTCTTTAAGAAGCTATGAGACATCTAGAAAGTTGCGGGTTGCCATTATTCATGGAATGGCTAGAATGGCTGCAATTATGGCTTCAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009266 GO:0009314 GO:0009408 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009526 GO:0009536 GO:0009540 GO:0009628 GO:0009639 GO:0009687 GO:0009688 GO:0009743 GO:0009756 GO:0009941 GO:0009987 GO:0010033 GO:0010035 GO:0010114 GO:0010182 GO:0016053 GO:0016106 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016122 GO:0016123 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0019752 GO:0023052 GO:0030104 GO:0031967 GO:0031975 GO:0032501 GO:0032787 GO:0042221 GO:0042440 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043289 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046148 GO:0046165 GO:0046394 GO:0048871 GO:0048878 GO:0050789 GO:0050794 GO:0050878 GO:0050891 GO:0050896 GO:0051716 GO:0052662 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071322 GO:0071704 GO:0072330 GO:1901576 GO:1901615 GO:1901617 GO:1901700 GO:1901701 GO:1902644 GO:1902645

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

FAD_binding_3 FHA NAD_binding_8

Protein Analysis

190

Amino Acids

20.94

Weight (kDa)

4.9

Isoelectric Point (pI)

52.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002983)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67030 AT5G67030
fragaria_vesca	FvH4_1g16080 FvH4_1g16080 FvH4_1g16080 FvH4_1g16080 FvH4_1g16080
malus_domestica	MD02G1172400.v1.1 MD15G1284500.v1.1
prunus_persica	Prupe.7G133100_v2.0.a1 Prupe.7G133100_v2.0.a1
pyrus_communis	pycom02g13890 pycom15g24720
rosa_chinensis	RchiOBHm_Chr2g0105701 RchiOBHm_Chr2g0138261 RchiOBHm_Chr5g0062971 RchiOBHm_Chr5g0062981
rosa_laevigata	RLG00000006425 RLG00000017450
rosa_multiflora	Rmu_sc0001051.1_g000057
rosa_roxburghii	Rroxscaffold_2G00137970 Rroxscaffold_2G00137980
rosa_rugosa	Rorug02G0129300 Rorug02G0129400 Rorug02G0129500 Rorug02G0129600
rosa_samantha	Rh2AG181000 Rh2BG190100 Rh2CG185200 Rh2DG187000 Rh4DG142500 Rh7AG320600 Rh7AG325500 Rh7BG187500 Rh7CG337400 Rh7CG342700
rosa_wichuraiana	Rw2G014150 Rw2G041180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	236
AciI	CCGC	2 cut(s)	194, 517
AcoI	YGGCCR	1 cut(s)	393
AcsI	RAATTY	2 cut(s)	112, 370
AcuI	CTGAAG	2 cut(s)	45, 165
AfiI	CCNNNNNNNGG	2 cut(s)	236, 374
AgsI	TTSAA	3 cut(s)	14, 442, 567
AjiI	CACGTC	1 cut(s)	284
AjnI	CCWGG	1 cut(s)	314
AluBI	AGCT	4 cut(s)	233, 427, 437, 495
AluI	AGCT	4 cut(s)	233, 427, 437, 495
Alw21I	GWGCWC	1 cut(s)	429
Alw26I	GTCTC	1 cut(s)	494
AlwNI	CAGNNNCTG	1 cut(s)	23
AoxI	GGCC	1 cut(s)	393
ApeKI	GCWGC	4 cut(s)	56, 364, 479, 551
ApoI	RAATTY	2 cut(s)	112, 370
AspS9I	GGNCC	1 cut(s)	300
AvaII	GGWCC	1 cut(s)	300
BaeGI	GKGCMC	1 cut(s)	162
BalI	TGGCCA	1 cut(s)	395
BanII	GRGCYC	1 cut(s)	429
Bbv12I	GWGCWC	1 cut(s)	429
BbvI	GCAGC	4 cut(s)	43, 376, 466, 538
BccI	CCATC	1 cut(s)	398
BcgI	CGANNNNNNTGC	2 cut(s)	251, 285
BciT130I	CCWGG	1 cut(s)	316
BcoDI	GTCTC	1 cut(s)	494
BfaI	CTAG	4 cut(s)	155, 234, 507, 543
BfmI	CTRYAG	2 cut(s)	57, 135
BisI	GCNGC	4 cut(s)	57, 365, 480, 552
BlsI	GCNGC	4 cut(s)	58, 366, 481, 553
Bme1390I	CCNGG	1 cut(s)	316
Bme18I	GGWCC	1 cut(s)	300
BmgBI	CACGTC	1 cut(s)	284
BmgT120I	GGNCC	1 cut(s)	300
BmiI	GGNNCC	2 cut(s)	228, 302
BmrFI	CCNGG	1 cut(s)	316
BmsI	GCATC	4 cut(s)	192, 235, 259, 377
BsaBI	GATNNNNATC	1 cut(s)	408
BsaJI	CCNNGG	3 cut(s)	261, 315, 355
BsaXI	ACNNNNNCTCC	2 cut(s)	336, 366
Bsc4I	CCNNNNNNNGG	2 cut(s)	236, 374
Bse1I	ACTGG	1 cut(s)	106
Bse3DI	GCAATG	2 cut(s)	212, 474
Bse8I	GATNNNNATC	1 cut(s)	408
BseBI	CCWGG	1 cut(s)	316
BseDI	CCNNGG	3 cut(s)	261, 315, 355
BseGI	GGATG	2 cut(s)	392, 409
BseJI	GATNNNNATC	1 cut(s)	408
BseLI	CCNNNNNNNGG	2 cut(s)	236, 374
BseMI	GCAATG	2 cut(s)	212, 474
BseNI	ACTGG	1 cut(s)	106
BseRI	GAGGAG	3 cut(s)	47, 83, 456
BseSI	GKGCMC	1 cut(s)	162
BseXI	GCAGC	4 cut(s)	43, 376, 466, 538
BshFI	GGCC	1 cut(s)	395
BsiHKAI	GWGCWC	1 cut(s)	429
BslI	CCNNNNNNNGG	2 cut(s)	236, 374
BsmAI	GTCTC	1 cut(s)	494
BsnI	GGCC	1 cut(s)	395
Bsp1286I	GDGCHC	2 cut(s)	162, 429
Bsp19I	CCATGG	1 cut(s)	355
BspACI	CCGC	2 cut(s)	194, 517
BspANI	GGCC	1 cut(s)	395
BspLI	GGNNCC	2 cut(s)	228, 302
BspMAI	CTGCAG	1 cut(s)	61
BsrDI	GCAATG	2 cut(s)	212, 474
BsrI	ACTGG	1 cut(s)	106
BssECI	CCNNGG	3 cut(s)	261, 315, 355
BssT1I	CCWWGG	1 cut(s)	355
Bst2UI	CCWGG	1 cut(s)	316
Bst6I	CTCTTC	1 cut(s)	24
BstC8I	GCNNGC	1 cut(s)	123
BstDSI	CCRYGG	1 cut(s)	355
BstF5I	GGATG	2 cut(s)	392, 409
BstMAI	GTCTC	1 cut(s)	494
BstMWI	GCNNNNNNNGC	4 cut(s)	239, 254, 548, 560
BstNI	CCWGG	1 cut(s)	316
BstSCI	CCNGG	1 cut(s)	314
BstSFI	CTRYAG	2 cut(s)	57, 135
BstSLI	GKGCMC	1 cut(s)	162
BstV1I	GCAGC	4 cut(s)	43, 376, 466, 538
BsuRI	GGCC	1 cut(s)	395
BtgI	CCRYGG	1 cut(s)	355
BtrI	CACGTC	1 cut(s)	284
BtsCI	GGATG	2 cut(s)	392, 409
BtsI	GCAGTG	1 cut(s)	457
BtsIMutI	CAGTG	1 cut(s)	457
Cac8I	GCNNGC	1 cut(s)	123
CaiI	CAGNNNCTG	1 cut(s)	23
Cfr13I	GGNCC	1 cut(s)	300
CviAII	CATG	3 cut(s)	356, 391, 533
EaeI	YGGCCR	1 cut(s)	393
Eam1104I	CTCTTC	1 cut(s)	24
EarI	CTCTTC	1 cut(s)	24
Ecl136II	GAGCTC	1 cut(s)	427
Eco130I	CCWWGG	1 cut(s)	355
Eco24I	GRGCYC	1 cut(s)	429
Eco47I	GGWCC	1 cut(s)	300
Eco53kI	GAGCTC	1 cut(s)	427
Eco57I	CTGAAG	2 cut(s)	45, 165
EcoICRI	GAGCTC	1 cut(s)	427
EcoO109I	RGGNCCY	1 cut(s)	300
EcoRII	CCWGG	1 cut(s)	314
EcoT14I	CCWWGG	1 cut(s)	355
EcoT22I	ATGCAT	2 cut(s)	217, 392
EcoT38I	GRGCYC	1 cut(s)	429
ErhI	CCWWGG	1 cut(s)	355
FaeI	CATG	3 cut(s)	359, 394, 536
FatI	CATG	3 cut(s)	355, 390, 532
FauI	CCCGC	2 cut(s)	187, 510
Fnu4HI	GCNGC	4 cut(s)	57, 365, 480, 552
FokI	GGATG	2 cut(s)	399, 416
FriOI	GRGCYC	1 cut(s)	429
Fsp4HI	GCNGC	4 cut(s)	57, 365, 480, 552
FspBI	CTAG	4 cut(s)	155, 234, 507, 543
GluI	GCNGC	4 cut(s)	57, 365, 480, 552
HaeIII	GGCC	1 cut(s)	395
Hin1II	CATG	3 cut(s)	359, 394, 536
HindIII	AAGCTT	1 cut(s)	435
HinfI	GANTC	3 cut(s)	14, 20, 347
Hpy188I	TCNGA	3 cut(s)	19, 25, 184
Hpy188III	TCNNGA	3 cut(s)	380, 470, 507
Hpy99I	CGWCG	1 cut(s)	285
HpyCH4IV	ACGT	2 cut(s)	186, 283
HpyCH4V	TGCA	7 cut(s)	59, 205, 215, 272, 364, 390, 554
HpyF10VI	GCNNNNNNNGC	4 cut(s)	239, 254, 548, 560
HpySE526I	ACGT	2 cut(s)	186, 283
Hsp92II	CATG	3 cut(s)	359, 394, 536
LmnI	GCTCC	1 cut(s)	424
LpnPI	CCDG	6 cut(s)	87, 135, 243, 301, 328, 483
Lsp1109I	GCAGC	4 cut(s)	43, 376, 466, 538
LweI	GCATC	4 cut(s)	192, 235, 259, 377
MaeI	CTAG	4 cut(s)	155, 234, 507, 543
MaeII	ACGT	2 cut(s)	186, 283
MaeIII	GTNAC	2 cut(s)	284, 331
MboII	GAAGA	6 cut(s)	38, 41, 50, 171, 278, 454
MhlI	GDGCHC	2 cut(s)	162, 429
MlsI	TGGCCA	1 cut(s)	395
MluCI	AATT	4 cut(s)	112, 273, 370, 555
MluNI	TGGCCA	1 cut(s)	395
MlyI	GAGTC	1 cut(s)	29
MmeI	TCCRAC	1 cut(s)	402
MnlI	CCTC	8 cut(s)	25, 28, 61, 64, 256, 376, 394, 477
Mox20I	TGGCCA	1 cut(s)	395
Mph1103I	ATGCAT	2 cut(s)	217, 392
MscI	TGGCCA	1 cut(s)	395
MseI	TTAA	2 cut(s)	488, 571
Msp20I	TGGCCA	1 cut(s)	395
MspR9I	CCNGG	1 cut(s)	316
MvaI	CCWGG	1 cut(s)	316
MwoI	GCNNNNNNNGC	4 cut(s)	239, 254, 548, 560
NcoI	CCATGG	1 cut(s)	355
NlaIII	CATG	3 cut(s)	359, 394, 536
NlaIV	GGNNCC	2 cut(s)	228, 302
NmuCI	GTSAC	2 cut(s)	284, 331
NsiI	ATGCAT	2 cut(s)	217, 392
PfeI	GAWTC	2 cut(s)	14, 347
PflMI	CCANNNNNTGG	1 cut(s)	236
PkrI	GCNGC	4 cut(s)	58, 366, 481, 553
PleI	GAGTC	1 cut(s)	28
PpsI	GAGTC	1 cut(s)	28
PpuMI	RGGWCCY	1 cut(s)	300
Psp124BI	GAGCTC	1 cut(s)	429
Psp5II	RGGWCCY	1 cut(s)	300
Psp6I	CCWGG	1 cut(s)	314
PspGI	CCWGG	1 cut(s)	314
PspN4I	GGNNCC	2 cut(s)	228, 302
PspPI	GGNCC	1 cut(s)	300
PspPPI	RGGWCCY	1 cut(s)	300
PstI	CTGCAG	1 cut(s)	61
PstNI	CAGNNNCTG	1 cut(s)	23
SacI	GAGCTC	1 cut(s)	429
SaqAI	TTAA	2 cut(s)	488, 571
SatI	GCNGC	4 cut(s)	57, 365, 480, 552
Sau96I	GGNCC	1 cut(s)	300
SchI	GAGTC	1 cut(s)	29
ScrFI	CCNGG	1 cut(s)	316
SduI	GDGCHC	2 cut(s)	162, 429
SetI	ASST	8 cut(s)	189, 193, 235, 286, 338, 429, 439, 497
SfaNI	GCATC	4 cut(s)	192, 235, 259, 377
SfcI	CTRYAG	2 cut(s)	57, 135
SinI	GGWCC	1 cut(s)	300
Sse9I	AATT	4 cut(s)	112, 273, 370, 555
SsiI	CCGC	2 cut(s)	194, 517
SspMI	CTAG	4 cut(s)	155, 234, 507, 543
SstI	GAGCTC	1 cut(s)	429
StyD4I	CCNGG	1 cut(s)	314
StyI	CCWWGG	1 cut(s)	355
TaiI	ACGT	2 cut(s)	189, 286
TaqI	TCGA	2 cut(s)	145, 429
TasI	AATT	4 cut(s)	112, 273, 370, 555
TfiI	GAWTC	2 cut(s)	14, 347
Tru1I	TTAA	2 cut(s)	488, 571
Tru9I	TTAA	2 cut(s)	488, 571
TscAI	CASTG	1 cut(s)	457
TseFI	GTSAC	2 cut(s)	284, 331
TseI	GCWGC	4 cut(s)	56, 364, 479, 551
Tsp45I	GTSAC	2 cut(s)	284, 331
TspDTI	ATGAA	1 cut(s)	521
TspRI	CASTG	1 cut(s)	457
Van91I	CCANNNNNTGG	1 cut(s)	236
VpaK11BI	GGWCC	1 cut(s)	300
XapI	RAATTY	2 cut(s)	112, 370
XbaI	TCTAGA	1 cut(s)	506
XcmI	CCANNNNNNNNNTGG	1 cut(s)	312
XspI	CTAG	4 cut(s)	155, 234, 507, 543
Zsp2I	ATGCAT	2 cut(s)	217, 392

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.