Rh7BG187500

Converts zeaxanthin into antheraxanthin and subsequently violaxanthin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0002983
Physical Location & Seq
Forward (+)
15139016 .. 15140649
1634 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG187500.1

Sequence Viewer

Length: 453 bp
ATGCAATGGTATGCATTTCACAAGGAACCAGCTGGTGGTGCTGATGCCCCCAATGGTAAAAAGGAAAGGTTGCTTAAAATATTTGATGGGTGGTGTGATAATGTGGTAGATTTGCTACTTGCCACAGAGGAAGATGCAATTCTACGACGTGGCATATATGACAGGACGCCAACTTTATCCTGGGGAAAGGTGAACTGGGAAACTCCTCCTGACATTGCTGCTTCTTTAAGCTATGAGACATCTAGAAAACTGCGGGTTGCCATTATTCATGGAATGGCTAGAATGGCTGCAATTATGGCTTCAACTTACAAGGCTTATCTGCGTGTAGGACTTGGTCCATTATCGTTTGTGACGAAGTTTAGGATACCACATCCAGGAAGAGTTGGTGGGAGAGTTTTTATTGACAAGGCAATGCCCTTGATGCTGAGTTGGGTCTTAGGTGGTAACAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009266 GO:0009314 GO:0009408 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009526 GO:0009536 GO:0009540 GO:0009628 GO:0009639 GO:0009687 GO:0009688 GO:0009743 GO:0009756 GO:0009941 GO:0009987 GO:0010033 GO:0010035 GO:0010114 GO:0010182 GO:0016053 GO:0016106 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016122 GO:0016123 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0019752 GO:0023052 GO:0030104 GO:0031967 GO:0031975 GO:0032501 GO:0032787 GO:0042221 GO:0042440 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043289 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046148 GO:0046165 GO:0046394 GO:0048871 GO:0048878 GO:0050789 GO:0050794 GO:0050878 GO:0050891 GO:0050896 GO:0051716 GO:0052662 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071322 GO:0071704 GO:0072330 GO:1901576 GO:1901615 GO:1901617 GO:1901700 GO:1901701 GO:1902644 GO:1902645
KEGG Pathways
Metabolic & Signaling
ko00906 ko01100 ko01110 map00906 map01100 map01110
Pfam Domains
Protein Families
FAD_binding_3 FHA NAD_binding_8

Protein Analysis

150

Amino Acids

16.77

Weight (kDa)

9.76

Isoelectric Point (pI)

30.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 35
AciI CCGC 1 cut(s) 253
AcyI GRCGYC 1 cut(s) 167
AfiI CCNNNNNNNGG 2 cut(s) 35, 374
AgsI TTSAA 1 cut(s) 303
AjiI CACGTC 1 cut(s) 149
AjnI CCWGG 2 cut(s) 179, 373
AluBI AGCT 2 cut(s) 32, 231
AluI AGCT 2 cut(s) 32, 231
Alw26I GTCTC 1 cut(s) 230
ApeKI GCWGC 2 cut(s) 218, 287
AspS9I GGNCC 1 cut(s) 335
AsuHPI GGTGA 1 cut(s) 202
AvaII GGWCC 1 cut(s) 335
BbvI GCAGC 2 cut(s) 205, 274
BccI CCATC 1 cut(s) 80
BciT130I CCWGG 2 cut(s) 181, 375
BciVI GTATCC 1 cut(s) 357
BcoDI GTCTC 1 cut(s) 230
BfaI CTAG 2 cut(s) 243, 279
BfuI GTATCC 1 cut(s) 357
BisI GCNGC 2 cut(s) 219, 288
BlsI GCNGC 2 cut(s) 220, 289
Bme1390I CCNGG 2 cut(s) 181, 375
Bme18I GGWCC 1 cut(s) 335
BmgBI CACGTC 1 cut(s) 149
BmgT120I GGNCC 1 cut(s) 335
BmiI GGNNCC 1 cut(s) 27
BmrFI CCNGG 2 cut(s) 181, 375
BmrI ACTGGG 1 cut(s) 205
BmsI GCATC 3 cut(s) 34, 124, 411
BmuI ACTGGG 1 cut(s) 205
BsaHI GRCGYC 1 cut(s) 167
BsaJI CCNNGG 1 cut(s) 180
Bsc4I CCNNNNNNNGG 2 cut(s) 35, 374
Bse1I ACTGG 1 cut(s) 200
Bse3DI GCAATG 3 cut(s) 11, 213, 417
BseBI CCWGG 2 cut(s) 181, 375
BseDI CCNNGG 1 cut(s) 180
BseGI GGATG 1 cut(s) 370
BseLI CCNNNNNNNGG 2 cut(s) 35, 374
BseMI GCAATG 3 cut(s) 11, 213, 417
BseMII CTCAG 1 cut(s) 416
BseNI ACTGG 1 cut(s) 200
BseRI GAGGAG 1 cut(s) 195
BseXI GCAGC 2 cut(s) 205, 274
BslI CCNNNNNNNGG 2 cut(s) 35, 374
BsmAI GTCTC 1 cut(s) 230
BspACI CCGC 1 cut(s) 253
BspCNI CTCAG 1 cut(s) 417
BspLI GGNNCC 1 cut(s) 27
BsrDI GCAATG 3 cut(s) 11, 213, 417
BsrI ACTGG 1 cut(s) 200
BssECI CCNNGG 1 cut(s) 180
BssNI GRCGYC 1 cut(s) 167
Bst2UI CCWGG 2 cut(s) 181, 375
Bst6I CTCTTC 1 cut(s) 373
BstACI GRCGYC 1 cut(s) 167
BstDEI CTNAG 2 cut(s) 425, 436
BstF5I GGATG 1 cut(s) 370
BstMAI GTCTC 1 cut(s) 230
BstMWI GCNNNNNNNGC 4 cut(s) 38, 284, 296, 421
BstNI CCWGG 2 cut(s) 181, 375
BstSCI CCNGG 2 cut(s) 179, 373
BstV1I GCAGC 2 cut(s) 205, 274
BsuI GTATCC 1 cut(s) 357
BtrI CACGTC 1 cut(s) 149
BtsCI GGATG 1 cut(s) 370
Cfr13I GGNCC 1 cut(s) 335
CseI GACGC 1 cut(s) 175
CviAII CATG 1 cut(s) 269
CviJI RGCY 6 cut(s) 32, 231, 278, 287, 299, 314
CviKI_1 RGCY 6 cut(s) 32, 231, 278, 287, 299, 314
DdeI CTNAG 2 cut(s) 425, 436
Eam1104I CTCTTC 1 cut(s) 373
EarI CTCTTC 1 cut(s) 373
Eco47I GGWCC 1 cut(s) 335
EcoRII CCWGG 2 cut(s) 179, 373
EcoT22I ATGCAT 1 cut(s) 16
FaeI CATG 1 cut(s) 272
FaiI YATR 7 cut(s) 12, 155, 157, 159, 234, 270, 296
FatI CATG 1 cut(s) 268
FauI CCCGC 1 cut(s) 246
Fnu4HI GCNGC 2 cut(s) 219, 288
FokI GGATG 1 cut(s) 357
Fsp4HI GCNGC 2 cut(s) 219, 288
FspBI CTAG 2 cut(s) 243, 279
GluI GCNGC 2 cut(s) 219, 288
HgaI GACGC 1 cut(s) 175
Hin1I GRCGYC 1 cut(s) 167
Hin1II CATG 1 cut(s) 272
HphI GGTGA 1 cut(s) 202
Hpy166II GTNNAC 1 cut(s) 193
Hpy188III TCNNGA 2 cut(s) 209, 243
Hpy8I GTNNAC 1 cut(s) 193
Hpy99I CGWCG 1 cut(s) 150
HpyCH4IV ACGT 1 cut(s) 148
HpyCH4V TGCA 4 cut(s) 4, 14, 137, 290
HpyF10VI GCNNNNNNNGC 4 cut(s) 38, 284, 296, 421
HpyF3I CTNAG 2 cut(s) 425, 436
HpySE526I ACGT 1 cut(s) 148
Hsp92I GRCGYC 1 cut(s) 167
Hsp92II CATG 1 cut(s) 272
Lsp1109I GCAGC 2 cut(s) 205, 274
LweI GCATC 3 cut(s) 34, 124, 411
MaeI CTAG 2 cut(s) 243, 279
MaeII ACGT 1 cut(s) 148
MaeIII GTNAC 2 cut(s) 349, 443
MboII GAAGA 2 cut(s) 143, 390
MluCI AATT 2 cut(s) 138, 291
MnlI CCTC 2 cut(s) 121, 216
Mph1103I ATGCAT 1 cut(s) 16
MseI TTAA 2 cut(s) 75, 227
MspA1I CMGCKG 1 cut(s) 32
MspR9I CCNGG 2 cut(s) 181, 375
MvaI CCWGG 2 cut(s) 181, 375
MwoI GCNNNNNNNGC 4 cut(s) 38, 284, 296, 421
NlaIII CATG 1 cut(s) 272
NlaIV GGNNCC 1 cut(s) 27
NmuCI GTSAC 1 cut(s) 349
NsiI ATGCAT 1 cut(s) 16
PcsI WCGNNNNNNNCGW 1 cut(s) 350
PflFI GACNNNGTC 1 cut(s) 333
PflMI CCANNNNNTGG 1 cut(s) 35
PfoI TCCNGGA 1 cut(s) 373
PkrI GCNGC 2 cut(s) 220, 289
Psp6I CCWGG 2 cut(s) 179, 373
PspGI CCWGG 2 cut(s) 179, 373
PspN4I GGNNCC 1 cut(s) 27
PspPI GGNCC 1 cut(s) 335
PsyI GACNNNGTC 1 cut(s) 333
PvuII CAGCTG 1 cut(s) 32
SaqAI TTAA 2 cut(s) 75, 227
SatI GCNGC 2 cut(s) 219, 288
Sau96I GGNCC 1 cut(s) 335
ScrFI CCNGG 2 cut(s) 181, 375
SetI ASST 7 cut(s) 34, 71, 151, 192, 233, 442, 452
SfaNI GCATC 3 cut(s) 34, 124, 411
SinI GGWCC 1 cut(s) 335
Sse9I AATT 2 cut(s) 138, 291
SsiI CCGC 1 cut(s) 253
SspI AATATT 1 cut(s) 81
SspMI CTAG 2 cut(s) 243, 279
StyD4I CCNGG 2 cut(s) 179, 373
TaiI ACGT 1 cut(s) 151
TasI AATT 2 cut(s) 138, 291
Tru1I TTAA 2 cut(s) 75, 227
Tru9I TTAA 2 cut(s) 75, 227
TseFI GTSAC 1 cut(s) 349
TseI GCWGC 2 cut(s) 218, 287
Tsp45I GTSAC 1 cut(s) 349
TspDTI ATGAA 1 cut(s) 257
Tth111I GACNNNGTC 1 cut(s) 333
Van91I CCANNNNNTGG 1 cut(s) 35
VpaK11BI GGWCC 1 cut(s) 335
XbaI TCTAGA 1 cut(s) 242
XcmI CCANNNNNNNNNTGG 1 cut(s) 177
XspI CTAG 2 cut(s) 243, 279
Zsp2I ATGCAT 1 cut(s) 16
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.