RLG00000006425

Converts zeaxanthin into antheraxanthin and subsequently violaxanthin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0002983
Physical Location & Seq
Forward (+)
7018774 .. 7020097
1324 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006425

Sequence Viewer

Length: 345 bp
ATGCAATGGTATGCATTTCACAAGGAACCAGCTAGTGGTGCTGATGCCCACAATGAGGAAGATGCAATTCTACAACGTAACATATATGATAGGACCCCAACTTTATCCTGGGGAAAGGGTAATGTGACCTTGCTTGGAGATTCTGTCCATGCTATGCAGTCAAATTTGGGTCAAGAGGGATGCATGGCCATTGAGGATGGTTATCAACTTGCATTGGAGCTTGAAAAAGCGTTGAAGAAAAGTAGTGAACTGGGAACTCCTCCTGACATTGCTGCTTCTTTAAGAAGCTATGAGACATCTAGAAAATTGCGGGTTGCGATTATTCATGAAAATTGCGGGTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009266 GO:0009314 GO:0009408 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009526 GO:0009536 GO:0009540 GO:0009628 GO:0009639 GO:0009687 GO:0009688 GO:0009743 GO:0009756 GO:0009941 GO:0009987 GO:0010033 GO:0010035 GO:0010114 GO:0010182 GO:0016053 GO:0016106 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016122 GO:0016123 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0019752 GO:0023052 GO:0030104 GO:0031967 GO:0031975 GO:0032501 GO:0032787 GO:0042221 GO:0042440 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043289 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046148 GO:0046165 GO:0046394 GO:0048871 GO:0048878 GO:0050789 GO:0050794 GO:0050878 GO:0050891 GO:0050896 GO:0051716 GO:0052662 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071322 GO:0071704 GO:0072330 GO:1901576 GO:1901615 GO:1901617 GO:1901700 GO:1901701 GO:1902644 GO:1902645
KEGG Pathways
Metabolic & Signaling
ko00906 ko01100 ko01110 map00906 map01100 map01110
Pfam Domains
Protein Families
FAD_binding_3 FHA NAD_binding_8

Protein Analysis

115

Amino Acids

12.57

Weight (kDa)

5.27

Isoelectric Point (pI)

54.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 35
AciI CCGC 2 cut(s) 310, 336
AcoI YGGCCR 1 cut(s) 186
AcsI RAATTY 1 cut(s) 163
AfiI CCNNNNNNNGG 2 cut(s) 35, 55
AgsI TTSAA 2 cut(s) 224, 235
AjnI CCWGG 1 cut(s) 107
AluBI AGCT 3 cut(s) 32, 220, 288
AluI AGCT 3 cut(s) 32, 220, 288
Alw26I GTCTC 1 cut(s) 287
AoxI GGCC 1 cut(s) 186
ApeKI GCWGC 1 cut(s) 272
ApoI RAATTY 1 cut(s) 163
AspS9I GGNCC 1 cut(s) 93
AvaII GGWCC 1 cut(s) 93
BalI TGGCCA 1 cut(s) 188
BbvI GCAGC 1 cut(s) 259
BccI CCATC 1 cut(s) 191
BciT130I CCWGG 1 cut(s) 109
BcoDI GTCTC 1 cut(s) 287
BfaI CTAG 2 cut(s) 33, 300
BisI GCNGC 1 cut(s) 273
BlsI GCNGC 1 cut(s) 274
Bme1390I CCNGG 1 cut(s) 109
Bme18I GGWCC 1 cut(s) 93
BmgT120I GGNCC 1 cut(s) 93
BmiI GGNNCC 2 cut(s) 27, 95
BmrFI CCNGG 1 cut(s) 109
BmrI ACTGGG 1 cut(s) 260
BmsI GCATC 3 cut(s) 34, 52, 170
BmuI ACTGGG 1 cut(s) 260
BsaBI GATNNNNATC 1 cut(s) 201
BsaJI CCNNGG 1 cut(s) 108
BsaXI ACNNNNNCTCC 2 cut(s) 129, 159
Bsc4I CCNNNNNNNGG 2 cut(s) 35, 55
Bse1I ACTGG 1 cut(s) 255
Bse3DI GCAATG 2 cut(s) 11, 267
Bse8I GATNNNNATC 1 cut(s) 201
BseBI CCWGG 1 cut(s) 109
BseDI CCNNGG 1 cut(s) 108
BseGI GGATG 2 cut(s) 185, 202
BseJI GATNNNNATC 1 cut(s) 201
BseLI CCNNNNNNNGG 2 cut(s) 35, 55
BseMI GCAATG 2 cut(s) 11, 267
BseNI ACTGG 1 cut(s) 255
BseRI GAGGAG 1 cut(s) 249
BseXI GCAGC 1 cut(s) 259
BshFI GGCC 1 cut(s) 188
BslI CCNNNNNNNGG 2 cut(s) 35, 55
BsmAI GTCTC 1 cut(s) 287
BsnI GGCC 1 cut(s) 188
BspACI CCGC 2 cut(s) 310, 336
BspANI GGCC 1 cut(s) 188
BspHI TCATGA 1 cut(s) 325
BspLI GGNNCC 2 cut(s) 27, 95
BsrDI GCAATG 2 cut(s) 11, 267
BsrI ACTGG 1 cut(s) 255
BssECI CCNNGG 1 cut(s) 108
Bst2UI CCWGG 1 cut(s) 109
BstF5I GGATG 2 cut(s) 185, 202
BstMAI GTCTC 1 cut(s) 287
BstMWI GCNNNNNNNGC 1 cut(s) 38
BstNI CCWGG 1 cut(s) 109
BstSCI CCNGG 1 cut(s) 107
BstV1I GCAGC 1 cut(s) 259
BsuRI GGCC 1 cut(s) 188
BtsCI GGATG 2 cut(s) 185, 202
CciI TCATGA 1 cut(s) 325
Cfr13I GGNCC 1 cut(s) 93
CviAII CATG 3 cut(s) 149, 184, 326
CviJI RGCY 4 cut(s) 32, 188, 220, 288
CviKI_1 RGCY 4 cut(s) 32, 188, 220, 288
EaeI YGGCCR 1 cut(s) 186
Eco47I GGWCC 1 cut(s) 93
EcoO109I RGGNCCY 1 cut(s) 93
EcoRII CCWGG 1 cut(s) 107
EcoT22I ATGCAT 2 cut(s) 16, 185
FaeI CATG 3 cut(s) 152, 187, 329
FaiI YATR 9 cut(s) 12, 83, 85, 87, 150, 155, 185, 291, 327
FatI CATG 3 cut(s) 148, 183, 325
FauI CCCGC 2 cut(s) 303, 329
Fnu4HI GCNGC 1 cut(s) 273
FokI GGATG 2 cut(s) 192, 209
Fsp4HI GCNGC 1 cut(s) 273
FspBI CTAG 2 cut(s) 33, 300
GluI GCNGC 1 cut(s) 273
HaeIII GGCC 1 cut(s) 188
Hin1II CATG 3 cut(s) 152, 187, 329
HinfI GANTC 1 cut(s) 140
Hpy166II GTNNAC 1 cut(s) 248
Hpy188III TCNNGA 4 cut(s) 173, 263, 300, 326
Hpy8I GTNNAC 1 cut(s) 248
HpyCH4IV ACGT 1 cut(s) 76
HpyCH4V TGCA 6 cut(s) 4, 14, 65, 157, 183, 212
HpyF10VI GCNNNNNNNGC 1 cut(s) 38
HpySE526I ACGT 1 cut(s) 76
Hsp92II CATG 3 cut(s) 152, 187, 329
LmnI GCTCC 1 cut(s) 217
LpnPI CCDG 5 cut(s) 42, 94, 121, 236, 276
Lsp1109I GCAGC 1 cut(s) 259
LweI GCATC 3 cut(s) 34, 52, 170
MaeI CTAG 2 cut(s) 33, 300
MaeII ACGT 1 cut(s) 76
MaeIII GTNAC 2 cut(s) 77, 124
MboII GAAGA 2 cut(s) 71, 247
MlsI TGGCCA 1 cut(s) 188
MluCI AATT 4 cut(s) 66, 163, 305, 331
MluNI TGGCCA 1 cut(s) 188
MnlI CCTC 4 cut(s) 49, 169, 187, 270
Mox20I TGGCCA 1 cut(s) 188
Mph1103I ATGCAT 2 cut(s) 16, 185
MscI TGGCCA 1 cut(s) 188
MseI TTAA 1 cut(s) 281
Msp20I TGGCCA 1 cut(s) 188
MspR9I CCNGG 1 cut(s) 109
MvaI CCWGG 1 cut(s) 109
MwoI GCNNNNNNNGC 1 cut(s) 38
NlaIII CATG 3 cut(s) 152, 187, 329
NlaIV GGNNCC 2 cut(s) 27, 95
NmuCI GTSAC 1 cut(s) 124
NsiI ATGCAT 2 cut(s) 16, 185
PagI TCATGA 1 cut(s) 325
PfeI GAWTC 1 cut(s) 140
PflMI CCANNNNNTGG 1 cut(s) 35
PkrI GCNGC 1 cut(s) 274
PpuMI RGGWCCY 1 cut(s) 93
Psp5II RGGWCCY 1 cut(s) 93
Psp6I CCWGG 1 cut(s) 107
PspGI CCWGG 1 cut(s) 107
PspN4I GGNNCC 2 cut(s) 27, 95
PspPI GGNCC 1 cut(s) 93
PspPPI RGGWCCY 1 cut(s) 93
SaqAI TTAA 1 cut(s) 281
SatI GCNGC 1 cut(s) 273
Sau96I GGNCC 1 cut(s) 93
ScrFI CCNGG 1 cut(s) 109
SetI ASST 5 cut(s) 34, 79, 131, 222, 290
SfaNI GCATC 3 cut(s) 34, 52, 170
SinI GGWCC 1 cut(s) 93
Sse9I AATT 4 cut(s) 66, 163, 305, 331
SsiI CCGC 2 cut(s) 310, 336
SspMI CTAG 2 cut(s) 33, 300
StyD4I CCNGG 1 cut(s) 107
TaiI ACGT 1 cut(s) 79
TasI AATT 4 cut(s) 66, 163, 305, 331
TfiI GAWTC 1 cut(s) 140
Tru1I TTAA 1 cut(s) 281
Tru9I TTAA 1 cut(s) 281
TseFI GTSAC 1 cut(s) 124
TseI GCWGC 1 cut(s) 272
Tsp45I GTSAC 1 cut(s) 124
TspDTI ATGAA 2 cut(s) 314, 342
Van91I CCANNNNNTGG 1 cut(s) 35
VpaK11BI GGWCC 1 cut(s) 93
XapI RAATTY 1 cut(s) 163
XbaI TCTAGA 1 cut(s) 299
XcmI CCANNNNNNNNNTGG 1 cut(s) 105
XspI CTAG 2 cut(s) 33, 300
Zsp2I ATGCAT 2 cut(s) 16, 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.