Rroxscaffold_2G00137980

Converts zeaxanthin into antheraxanthin and subsequently violaxanthin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0002983
Physical Location & Seq
Forward (+)
75987680 .. 75990507
2828 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00137980.1

Sequence Viewer

Length: 666 bp
ATGGCTGCAATTATGGCTTCAACTTACAAGGCTTATCTGGGTGTAGGACTTGGTCCATTATCGTTTTTGACGAAGTTTCGGATACCACATCCAGGAAGAGTTGGTGGGAGAGTTTTTATTGACAAGGCAATGCCCTTGATGCTGAGTTGGGTCTTAGGTGGTAACAGCTCAAAACTTGAAGGAAGGCCACCAAGTTGCAGGCTTTCAGACAAAGCTGATGATCAGTTACGAAGTTGGTTTGAGGACGATGATGCACTGGAGCGTGCTATTGATGGAGAGTGGTATCTTATACCTTGTGGACATGAAAATGGTGCTTCGCAACTTATTCATTTAAACAGAGATGAGAAAACCCCCTGCATAATTGGGAACACCTCAAATGGGGATTCTTCAGTAATATCAGTTCCATTACCCCAGGTTTCAGAAAATCATGCTTCTATCACCTACAAGGATGGTGGTTTTTACCTGTCTGATTTGCGAAGCAAGTATGGTACCTGGCTCGCTGACAATGAGGAGAAGCGGTACCGGATACCTCCAAATTTTGCAGTTCGTTTCCACCCCTCGGATGTTATTGAGATTGGTCCTGGGCAGAAGGTAGCATTTAGGGTAAAAGTTATGCAGACTGATCCAAGGAGTCCTGAAAAGGATGGAATTCTTCAGGCAGCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009266 GO:0009314 GO:0009408 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009526 GO:0009536 GO:0009540 GO:0009628 GO:0009639 GO:0009687 GO:0009688 GO:0009743 GO:0009756 GO:0009941 GO:0009987 GO:0010033 GO:0010035 GO:0010114 GO:0010182 GO:0016053 GO:0016106 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016122 GO:0016123 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0019752 GO:0023052 GO:0030104 GO:0031967 GO:0031975 GO:0032501 GO:0032787 GO:0042221 GO:0042440 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043289 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046148 GO:0046165 GO:0046394 GO:0048871 GO:0048878 GO:0050789 GO:0050794 GO:0050878 GO:0050891 GO:0050896 GO:0051716 GO:0052662 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071322 GO:0071704 GO:0072330 GO:1901576 GO:1901615 GO:1901617 GO:1901700 GO:1901701 GO:1902644 GO:1902645
KEGG Pathways
Metabolic & Signaling
ko00906 ko01100 ko01110 map00906 map01100 map01110
Pfam Domains
Protein Families
FAD_binding_3 FHA NAD_binding_8

Protein Analysis

221

Amino Acids

24.45

Weight (kDa)

6.52

Isoelectric Point (pI)

35.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FHA PF00498 128 - 193 2.4e-10 FHA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 488, 519
AccB1I GGYRCC 2 cut(s) 488, 519
AciI CCGC 1 cut(s) 517
AclWI GGATC 1 cut(s) 617
AcsI RAATTY 2 cut(s) 535, 648
AcuI CTGAAG 2 cut(s) 372, 638
AfaI GTAC 2 cut(s) 490, 521
AfiI CCNNNNNNNGG 3 cut(s) 92, 378, 559
AgsI TTSAA 2 cut(s) 21, 179
AjnI CCWGG 4 cut(s) 91, 411, 491, 580
AluBI AGCT 2 cut(s) 168, 215
AluI AGCT 2 cut(s) 168, 215
AlwI GGATC 1 cut(s) 617
AoxI GGCC 1 cut(s) 185
ApeKI GCWGC 2 cut(s) 5, 659
ApoI RAATTY 2 cut(s) 535, 648
Asp718I GGTACC 2 cut(s) 488, 519
AspS9I GGNCC 2 cut(s) 53, 578
AsuHPI GGTGA 1 cut(s) 430
AvaII GGWCC 2 cut(s) 53, 578
BanI GGYRCC 2 cut(s) 488, 519
BccI CCATC 3 cut(s) 266, 443, 638
BciT130I CCWGG 4 cut(s) 93, 413, 493, 582
BciVI GTATCC 2 cut(s) 75, 519
BclI TGATCA 1 cut(s) 220
BfuI GTATCC 2 cut(s) 75, 519
BisI GCNGC 2 cut(s) 6, 660
BlsI GCNGC 2 cut(s) 7, 661
Bme1390I CCNGG 4 cut(s) 93, 413, 493, 582
Bme18I GGWCC 2 cut(s) 53, 578
BmgT120I GGNCC 2 cut(s) 53, 578
BmiI GGNNCC 2 cut(s) 490, 521
BmrFI CCNGG 4 cut(s) 93, 413, 493, 582
BmsI GCATC 2 cut(s) 129, 241
BpmI CTGGAG 1 cut(s) 278
BsaJI CCNNGG 4 cut(s) 411, 558, 581, 626
BsaWI WCCGGW 1 cut(s) 522
BsaXI ACNNNNNCTCC 2 cut(s) 503, 533
Bsc4I CCNNNNNNNGG 3 cut(s) 92, 378, 559
Bse1I ACTGG 1 cut(s) 261
Bse3DI GCAATG 1 cut(s) 135
BseBI CCWGG 4 cut(s) 93, 413, 493, 582
BseDI CCNNGG 4 cut(s) 411, 558, 581, 626
BseGI GGATG 4 cut(s) 88, 454, 568, 649
BseLI CCNNNNNNNGG 3 cut(s) 92, 378, 559
BseMI GCAATG 1 cut(s) 135
BseMII CTCAG 1 cut(s) 134
BseNI ACTGG 1 cut(s) 261
BseRI GAGGAG 1 cut(s) 524
BshFI GGCC 1 cut(s) 187
BshNI GGYRCC 2 cut(s) 488, 519
BsiSI CCGG 1 cut(s) 523
BslI CCNNNNNNNGG 3 cut(s) 92, 378, 559
BsnI GGCC 1 cut(s) 187
Bsp143I GATC 2 cut(s) 220, 622
BspACI CCGC 1 cut(s) 517
BspANI GGCC 1 cut(s) 187
BspCNI CTCAG 1 cut(s) 135
BspLI GGNNCC 2 cut(s) 490, 521
BspPI GGATC 1 cut(s) 617
BspT107I GGYRCC 2 cut(s) 488, 519
BsrDI GCAATG 1 cut(s) 135
BsrI ACTGG 1 cut(s) 261
BssECI CCNNGG 4 cut(s) 411, 558, 581, 626
BssMI GATC 2 cut(s) 220, 622
BssT1I CCWWGG 1 cut(s) 626
Bst2UI CCWGG 4 cut(s) 93, 413, 493, 582
Bst6I CTCTTC 1 cut(s) 91
BstC8I GCNNGC 3 cut(s) 200, 264, 498
BstDEI CTNAG 2 cut(s) 143, 154
BstF5I GGATG 4 cut(s) 88, 454, 568, 649
BstKTI GATC 2 cut(s) 223, 625
BstMBI GATC 2 cut(s) 220, 622
BstMWI GCNNNNNNNGC 2 cut(s) 14, 139
BstNI CCWGG 4 cut(s) 93, 413, 493, 582
BstSCI CCNGG 4 cut(s) 91, 411, 491, 580
BsuI GTATCC 2 cut(s) 75, 519
BsuRI GGCC 1 cut(s) 187
BtsCI GGATG 4 cut(s) 88, 454, 568, 649
BtsIMutI CAGTG 1 cut(s) 254
Cac8I GCNNGC 3 cut(s) 200, 264, 498
Cfr13I GGNCC 2 cut(s) 53, 578
Csp6I GTAC 2 cut(s) 489, 520
CspCI CAANNNNNGTGG 2 cut(s) 433, 468
CviAII CATG 2 cut(s) 302, 428
CviJI RGCY 8 cut(s) 5, 17, 32, 168, 187, 202, 215, 496
CviKI_1 RGCY 8 cut(s) 5, 17, 32, 168, 187, 202, 215, 496
CviQI GTAC 2 cut(s) 489, 520
DdeI CTNAG 2 cut(s) 143, 154
DpnI GATC 2 cut(s) 222, 624
DpnII GATC 2 cut(s) 220, 622
DraI TTTAAA 1 cut(s) 333
Eam1104I CTCTTC 1 cut(s) 91
EarI CTCTTC 1 cut(s) 91
Eco130I CCWWGG 1 cut(s) 626
Eco47I GGWCC 2 cut(s) 53, 578
Eco57I CTGAAG 2 cut(s) 372, 638
EcoRI GAATTC 1 cut(s) 648
EcoRII CCWGG 4 cut(s) 91, 411, 491, 580
EcoT14I CCWWGG 1 cut(s) 626
ErhI CCWWGG 1 cut(s) 626
FaeI CATG 2 cut(s) 305, 431
FaiI YATR 7 cut(s) 14, 290, 303, 359, 429, 486, 614
FatI CATG 2 cut(s) 301, 427
FbaI TGATCA 1 cut(s) 220
Fnu4HI GCNGC 2 cut(s) 6, 660
FokI GGATG 4 cut(s) 75, 461, 575, 656
Fsp4HI GCNGC 2 cut(s) 6, 660
GluI GCNGC 2 cut(s) 6, 660
GsuI CTGGAG 1 cut(s) 278
HaeIII GGCC 1 cut(s) 187
HapII CCGG 1 cut(s) 523
Hin1II CATG 2 cut(s) 305, 431
HinfI GANTC 2 cut(s) 383, 631
HpaII CCGG 1 cut(s) 523
HphI GGTGA 1 cut(s) 430
Hpy166II GTNNAC 1 cut(s) 299
Hpy188I TCNGA 5 cut(s) 81, 208, 421, 469, 562
Hpy188III TCNNGA 1 cut(s) 635
Hpy8I GTNNAC 1 cut(s) 299
HpyAV CCTTC 3 cut(s) 173, 177, 583
HpyCH4V TGCA 6 cut(s) 8, 198, 254, 357, 542, 616
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 139
HpyF3I CTNAG 2 cut(s) 143, 154
Hsp92II CATG 2 cut(s) 305, 431
KpnI GGTACC 2 cut(s) 492, 523
Ksp22I TGATCA 1 cut(s) 220
Kzo9I GATC 2 cut(s) 220, 622
LmnI GCTCC 1 cut(s) 259
LweI GCATC 2 cut(s) 129, 241
MaeIII GTNAC 2 cut(s) 161, 225
MalI GATC 2 cut(s) 222, 624
MboI GATC 2 cut(s) 220, 622
MboII GAAGA 3 cut(s) 108, 378, 644
MluCI AATT 4 cut(s) 9, 360, 535, 648
MlyI GAGTC 1 cut(s) 640
MnlI CCTC 5 cut(s) 235, 382, 502, 540, 568
MseI TTAA 1 cut(s) 332
MslI CAYNNNNRTG 1 cut(s) 306
MspI CCGG 1 cut(s) 523
MspR9I CCNGG 4 cut(s) 93, 413, 493, 582
MvaI CCWGG 4 cut(s) 93, 413, 493, 582
MwoI GCNNNNNNNGC 2 cut(s) 14, 139
NdeII GATC 2 cut(s) 220, 622
NlaIII CATG 2 cut(s) 305, 431
NlaIV GGNNCC 2 cut(s) 490, 521
PcsI WCGNNNNNNNCGW 1 cut(s) 68
PfeI GAWTC 1 cut(s) 383
PflFI GACNNNGTC 1 cut(s) 51
PfoI TCCNGGA 1 cut(s) 91
PkrI GCNGC 2 cut(s) 7, 661
PleI GAGTC 1 cut(s) 639
PpsI GAGTC 1 cut(s) 639
Psp6I CCWGG 4 cut(s) 91, 411, 491, 580
PspGI CCWGG 4 cut(s) 91, 411, 491, 580
PspN4I GGNNCC 2 cut(s) 490, 521
PspPI GGNCC 2 cut(s) 53, 578
PsrI GAACNNNNNNTAC 2 cut(s) 384, 416
PsyI GACNNNGTC 1 cut(s) 51
RsaI GTAC 2 cut(s) 490, 521
RsaNI GTAC 2 cut(s) 489, 520
RseI CAYNNNNRTG 1 cut(s) 306
SaqAI TTAA 1 cut(s) 332
SatI GCNGC 2 cut(s) 6, 660
Sau3AI GATC 2 cut(s) 220, 622
Sau96I GGNCC 2 cut(s) 53, 578
SchI GAGTC 1 cut(s) 640
ScrFI CCNGG 4 cut(s) 93, 413, 493, 582
SfaNI GCATC 2 cut(s) 129, 241
SinI GGWCC 2 cut(s) 53, 578
SmiMI CAYNNNNRTG 1 cut(s) 306
Sse9I AATT 4 cut(s) 9, 360, 535, 648
SsiI CCGC 1 cut(s) 517
StyD4I CCNGG 4 cut(s) 91, 411, 491, 580
StyI CCWWGG 1 cut(s) 626
TasI AATT 4 cut(s) 9, 360, 535, 648
TfiI GAWTC 1 cut(s) 383
Tru1I TTAA 1 cut(s) 332
Tru9I TTAA 1 cut(s) 332
TscAI CASTG 1 cut(s) 261
TseI GCWGC 2 cut(s) 5, 659
TspDTI ATGAA 2 cut(s) 317, 318
TspRI CASTG 1 cut(s) 261
Tth111I GACNNNGTC 1 cut(s) 51
VpaK11BI GGWCC 2 cut(s) 53, 578
XapI RAATTY 2 cut(s) 535, 648
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.