Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002983

Physical Location & Seq

Genomic Coordinates Reverse (-)

68751722 .. 68752366

Gene Structure 645 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ33913

Sequence Viewer

CDS Protein Promoter (2k)

Length: 150 bp

ATGCTTGAAAAAGCTTTGAAGAAAAGCAGTGAAGTGGGAACTCTTCCTGACATTGCAGCTTCTTTAAGAAGCTATGAGACATCTAGAAAACTGCGGGTTGCGATTATTCATGGAATGACTAGAATGGCTGCAATTATGGCTTCAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009266 GO:0009314 GO:0009408 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009526 GO:0009536 GO:0009540 GO:0009628 GO:0009639 GO:0009687 GO:0009688 GO:0009743 GO:0009756 GO:0009941 GO:0009987 GO:0010033 GO:0010035 GO:0010114 GO:0010182 GO:0016053 GO:0016106 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016122 GO:0016123 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0019752 GO:0023052 GO:0030104 GO:0031967 GO:0031975 GO:0032501 GO:0032787 GO:0042221 GO:0042440 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043289 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046148 GO:0046165 GO:0046394 GO:0048871 GO:0048878 GO:0050789 GO:0050794 GO:0050878 GO:0050891 GO:0050896 GO:0051716 GO:0052662 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071322 GO:0071704 GO:0072330 GO:1901576 GO:1901615 GO:1901617 GO:1901700 GO:1901701 GO:1902644 GO:1902645

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

FAD_binding_3 FHA NAD_binding_8

Protein Analysis

49

Amino Acids

5.34

Weight (kDa)

10.16

Isoelectric Point (pI)

37.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002983)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67030 AT5G67030
fragaria_vesca	FvH4_1g16080 FvH4_1g16080 FvH4_1g16080 FvH4_1g16080 FvH4_1g16080
malus_domestica	MD02G1172400.v1.1 MD15G1284500.v1.1
prunus_persica	Prupe.7G133100_v2.0.a1 Prupe.7G133100_v2.0.a1
pyrus_communis	pycom02g13890 pycom15g24720
rosa_chinensis	RchiOBHm_Chr2g0105701 RchiOBHm_Chr2g0138261 RchiOBHm_Chr5g0062971 RchiOBHm_Chr5g0062981
rosa_laevigata	RLG00000006425 RLG00000017450
rosa_multiflora	Rmu_sc0001051.1_g000057
rosa_roxburghii	Rroxscaffold_2G00137970 Rroxscaffold_2G00137980
rosa_rugosa	Rorug02G0129300 Rorug02G0129400 Rorug02G0129500 Rorug02G0129600
rosa_samantha	Rh2AG181000 Rh2BG190100 Rh2CG185200 Rh2DG187000 Rh4DG142500 Rh7AG320600 Rh7AG325500 Rh7BG187500 Rh7CG337400 Rh7CG342700
rosa_wichuraiana	Rw2G014150 Rw2G041180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	94
AgsI	TTSAA	3 cut(s)	8, 19, 144
AluBI	AGCT	3 cut(s)	14, 59, 72
AluI	AGCT	3 cut(s)	14, 59, 72
Alw26I	GTCTC	1 cut(s)	71
ApeKI	GCWGC	2 cut(s)	56, 128
BbvI	GCAGC	2 cut(s)	68, 115
BcoDI	GTCTC	1 cut(s)	71
BfaI	CTAG	2 cut(s)	84, 120
BisI	GCNGC	2 cut(s)	57, 129
BlsI	GCNGC	2 cut(s)	58, 130
Bse3DI	GCAATG	1 cut(s)	51
BseMI	GCAATG	1 cut(s)	51
BseXI	GCAGC	2 cut(s)	68, 115
BsmAI	GTCTC	1 cut(s)	71
BspACI	CCGC	1 cut(s)	94
BsrDI	GCAATG	1 cut(s)	51
Bst6I	CTCTTC	1 cut(s)	48
BstMAI	GTCTC	1 cut(s)	71
BstMWI	GCNNNNNNNGC	1 cut(s)	137
BstV1I	GCAGC	2 cut(s)	68, 115
BtsI	GCAGTG	1 cut(s)	34
BtsIMutI	CAGTG	1 cut(s)	34
CviAII	CATG	1 cut(s)	110
CviJI	RGCY	5 cut(s)	14, 59, 72, 128, 140
CviKI_1	RGCY	5 cut(s)	14, 59, 72, 128, 140
Eam1104I	CTCTTC	1 cut(s)	48
EarI	CTCTTC	1 cut(s)	48
FaeI	CATG	1 cut(s)	113
FaiI	YATR	3 cut(s)	75, 111, 137
FatI	CATG	1 cut(s)	109
FauI	CCCGC	1 cut(s)	87
Fnu4HI	GCNGC	2 cut(s)	57, 129
Fsp4HI	GCNGC	2 cut(s)	57, 129
FspBI	CTAG	2 cut(s)	84, 120
FspEI	CC	8 cut(s)	20, 21, 60, 79, 80, 96, 110, 122
GluI	GCNGC	2 cut(s)	57, 129
Hin1II	CATG	1 cut(s)	113
HindIII	AAGCTT	1 cut(s)	12
Hpy188III	TCNNGA	2 cut(s)	47, 84
HpyCH4V	TGCA	2 cut(s)	56, 131
HpyF10VI	GCNNNNNNNGC	1 cut(s)	137
Hsp92II	CATG	1 cut(s)	113
LpnPI	CCDG	1 cut(s)	60
Lsp1109I	GCAGC	2 cut(s)	68, 115
MaeI	CTAG	2 cut(s)	84, 120
MboII	GAAGA	2 cut(s)	31, 35
MluCI	AATT	1 cut(s)	132
MseI	TTAA	2 cut(s)	65, 148
MwoI	GCNNNNNNNGC	1 cut(s)	137
NlaIII	CATG	1 cut(s)	113
PkrI	GCNGC	2 cut(s)	58, 130
SaqAI	TTAA	2 cut(s)	65, 148
SatI	GCNGC	2 cut(s)	57, 129
SetI	ASST	3 cut(s)	16, 61, 74
SgeI	CNNG	6 cut(s)	17, 59, 96, 107, 122, 132
Sse9I	AATT	1 cut(s)	132
SsiI	CCGC	1 cut(s)	94
SspMI	CTAG	2 cut(s)	84, 120
TasI	AATT	1 cut(s)	132
Tru1I	TTAA	2 cut(s)	65, 148
Tru9I	TTAA	2 cut(s)	65, 148
TscAI	CASTG	1 cut(s)	34
TseI	GCWGC	2 cut(s)	56, 128
TspDTI	ATGAA	1 cut(s)	98
TspRI	CASTG	1 cut(s)	34
XbaI	TCTAGA	1 cut(s)	83
XspI	CTAG	2 cut(s)	84, 120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.