Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0002983

Physical Location & Seq

Genomic Coordinates Reverse (-)

38532568 .. 38539521

Gene Structure 6954 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG342700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGAACTACTTGAAATTTGAGCAATCTTCTGGAGATCCTGCCCGTGTTCAAGTGTTGTATGAACGGGCTATTGCTGAGTTTCCTATAGCCAGTCATCTGTGGCTTGATTATACTTCCTATTTGGACAAAACTTTGAAGGTTGGCAGAATTATAAGCAACGTTTATTCTAGGGCCGTAAAGAATTGCCCCTGGGTTGGAGAACTTTGGTTCAGATATTTGCTTTCCTTGGAGCGTGGCCATGCTTCTGAGAAAGAGATTGCAGCTGTATGTTTCAAATGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lsm_interact RRM_1 Suf

Protein Analysis

93

Amino Acids

10.79

Weight (kDa)

8.48

Isoelectric Point (pI)

22.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HAT_PRP39_C	PF23241	2 - 60	6.8e-11	PRP39 C-terminal HAT repeat
HAT_PRP39_N	PF23240	3 - 73	8.5e-07	PRP39 N-terminal HAT repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002983)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67030 AT5G67030
fragaria_vesca	FvH4_1g16080 FvH4_1g16080 FvH4_1g16080 FvH4_1g16080 FvH4_1g16080
malus_domestica	MD02G1172400.v1.1 MD15G1284500.v1.1
prunus_persica	Prupe.7G133100_v2.0.a1 Prupe.7G133100_v2.0.a1
pyrus_communis	pycom02g13890 pycom15g24720
rosa_chinensis	RchiOBHm_Chr2g0105701 RchiOBHm_Chr2g0138261 RchiOBHm_Chr5g0062971 RchiOBHm_Chr5g0062981
rosa_laevigata	RLG00000006425 RLG00000017450
rosa_multiflora	Rmu_sc0001051.1_g000057
rosa_roxburghii	Rroxscaffold_2G00137970 Rroxscaffold_2G00137980
rosa_rugosa	Rorug02G0129300 Rorug02G0129400 Rorug02G0129500 Rorug02G0129600
rosa_samantha	Rh2AG181000 Rh2BG190100 Rh2CG185200 Rh2DG187000 Rh4DG142500 Rh7AG320600 Rh7AG325500 Rh7BG187500 Rh7CG337400 Rh7CG342700
rosa_wichuraiana	Rw2G014150 Rw2G041180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	152
AclI	AACGTT	1 cut(s)	159
AclWI	GGATC	1 cut(s)	29
AcoI	YGGCCR	1 cut(s)	235
AcsI	RAATTY	1 cut(s)	14
AfiI	CCNNNNNNNGG	1 cut(s)	194
AgsI	TTSAA	4 cut(s)	13, 50, 136, 274
AjnI	CCWGG	1 cut(s)	188
AluBI	AGCT	1 cut(s)	263
AluI	AGCT	1 cut(s)	263
AlwI	GGATC	1 cut(s)	29
AoxI	GGCC	2 cut(s)	171, 235
ApeKI	GCWGC	1 cut(s)	260
ApoI	RAATTY	1 cut(s)	14
AspS9I	GGNCC	1 cut(s)	171
BalI	TGGCCA	1 cut(s)	237
BbvI	GCAGC	1 cut(s)	272
BceAI	ACGGC	1 cut(s)	158
BciT130I	CCWGG	1 cut(s)	190
BfaI	CTAG	1 cut(s)	168
BfmI	CTRYAG	1 cut(s)	84
BisI	GCNGC	1 cut(s)	261
BlsI	GCNGC	1 cut(s)	262
Bme1390I	CCNGG	1 cut(s)	190
BmgT120I	GGNCC	1 cut(s)	171
BmrFI	CCNGG	1 cut(s)	190
BpmI	CTGGAG	1 cut(s)	51
BsaJI	CCNNGG	3 cut(s)	188, 189, 225
Bsc4I	CCNNNNNNNGG	1 cut(s)	194
Bse1I	ACTGG	1 cut(s)	90
BseBI	CCWGG	1 cut(s)	190
BseDI	CCNNGG	3 cut(s)	188, 189, 225
BseLI	CCNNNNNNNGG	1 cut(s)	194
BseMII	CTCAG	2 cut(s)	66, 237
BseNI	ACTGG	1 cut(s)	90
BseXI	GCAGC	1 cut(s)	272
BshFI	GGCC	2 cut(s)	173, 237
BslI	CCNNNNNNNGG	1 cut(s)	194
BsnI	GGCC	2 cut(s)	173, 237
Bsp143I	GATC	1 cut(s)	34
BspANI	GGCC	2 cut(s)	173, 237
BspCNI	CTCAG	2 cut(s)	67, 238
BspPI	GGATC	1 cut(s)	29
BsrI	ACTGG	1 cut(s)	90
BssECI	CCNNGG	3 cut(s)	188, 189, 225
BssMI	GATC	1 cut(s)	34
BssT1I	CCWWGG	1 cut(s)	225
Bst2UI	CCWGG	1 cut(s)	190
BstDEI	CTNAG	2 cut(s)	75, 246
BstKTI	GATC	1 cut(s)	37
BstMBI	GATC	1 cut(s)	34
BstNI	CCWGG	1 cut(s)	190
BstSCI	CCNGG	1 cut(s)	188
BstSFI	CTRYAG	1 cut(s)	84
BstV1I	GCAGC	1 cut(s)	272
BstX2I	RGATCY	1 cut(s)	34
BstYI	RGATCY	1 cut(s)	34
BsuRI	GGCC	2 cut(s)	173, 237
Cfr13I	GGNCC	1 cut(s)	171
CviAII	CATG	1 cut(s)	239
CviJI	RGCY	6 cut(s)	68, 89, 103, 173, 237, 263
CviKI_1	RGCY	6 cut(s)	68, 89, 103, 173, 237, 263
DdeI	CTNAG	2 cut(s)	75, 246
DpnI	GATC	1 cut(s)	36
DpnII	GATC	1 cut(s)	34
EaeI	YGGCCR	1 cut(s)	235
Eco130I	CCWWGG	1 cut(s)	225
EcoRII	CCWGG	1 cut(s)	188
EcoT14I	CCWWGG	1 cut(s)	225
ErhI	CCWWGG	1 cut(s)	225
FaeI	CATG	1 cut(s)	242
FaiI	YATR	6 cut(s)	60, 86, 111, 152, 240, 268
FatI	CATG	1 cut(s)	238
Fnu4HI	GCNGC	1 cut(s)	261
Fsp4HI	GCNGC	1 cut(s)	261
FspBI	CTAG	1 cut(s)	168
GluI	GCNGC	1 cut(s)	261
GsuI	CTGGAG	1 cut(s)	51
HaeIII	GGCC	2 cut(s)	173, 237
Hin1II	CATG	1 cut(s)	242
Hpy188I	TCNGA	2 cut(s)	212, 247
Hpy188III	TCNNGA	1 cut(s)	30
HpyAV	CCTTC	1 cut(s)	130
HpyCH4IV	ACGT	1 cut(s)	159
HpyCH4V	TGCA	1 cut(s)	260
HpyF3I	CTNAG	2 cut(s)	75, 246
HpySE526I	ACGT	1 cut(s)	159
Hsp92II	CATG	1 cut(s)	242
Kzo9I	GATC	1 cut(s)	34
LmnI	GCTCC	1 cut(s)	229
LpnPI	CCDG	5 cut(s)	15, 51, 103, 175, 202
Lsp1109I	GCAGC	1 cut(s)	272
MaeI	CTAG	1 cut(s)	168
MaeII	ACGT	1 cut(s)	159
MalI	GATC	1 cut(s)	36
MboI	GATC	1 cut(s)	34
MboII	GAAGA	1 cut(s)	18
MflI	RGATCY	1 cut(s)	34
MlsI	TGGCCA	1 cut(s)	237
MluCI	AATT	3 cut(s)	14, 147, 181
MluNI	TGGCCA	1 cut(s)	237
MmeI	TCCRAC	1 cut(s)	175
Mox20I	TGGCCA	1 cut(s)	237
MscI	TGGCCA	1 cut(s)	237
MseI	TTAA	1 cut(s)	280
Msp20I	TGGCCA	1 cut(s)	237
MspA1I	CMGCKG	1 cut(s)	263
MspR9I	CCNGG	1 cut(s)	190
MvaI	CCWGG	1 cut(s)	190
NdeII	GATC	1 cut(s)	34
NlaIII	CATG	1 cut(s)	242
PasI	CCCWGGG	1 cut(s)	189
PkrI	GCNGC	1 cut(s)	262
PsiI	TTATAA	1 cut(s)	152
Psp1406I	AACGTT	1 cut(s)	159
Psp6I	CCWGG	1 cut(s)	188
PspGI	CCWGG	1 cut(s)	188
PspPI	GGNCC	1 cut(s)	171
PsuI	RGATCY	1 cut(s)	34
PvuII	CAGCTG	1 cut(s)	263
SaqAI	TTAA	1 cut(s)	280
SatI	GCNGC	1 cut(s)	261
Sau3AI	GATC	1 cut(s)	34
Sau96I	GGNCC	1 cut(s)	171
ScrFI	CCNGG	1 cut(s)	190
SetI	ASST	3 cut(s)	141, 162, 265
SfcI	CTRYAG	1 cut(s)	84
Sse9I	AATT	3 cut(s)	14, 147, 181
SspMI	CTAG	1 cut(s)	168
StyD4I	CCNGG	1 cut(s)	188
StyI	CCWWGG	1 cut(s)	225
TaiI	ACGT	1 cut(s)	162
TasI	AATT	3 cut(s)	14, 147, 181
Tru1I	TTAA	1 cut(s)	280
Tru9I	TTAA	1 cut(s)	280
TseI	GCWGC	1 cut(s)	260
TspDTI	ATGAA	2 cut(s)	17, 75
XapI	RAATTY	1 cut(s)	14
XspI	CTAG	1 cut(s)	168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.