Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0002983

Physical Location & Seq

Genomic Coordinates Forward (+)

28185980 .. 28187910

Gene Structure 1931 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG142500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGTTGTCCTTGCTGCCACTGAATCGGATGATGAGTTTGAATCAGAAGGAGGCTGTTTATTCGGGTTATACTTGTTATACTGGTATTACAAATTTTGTGCCTGCTGACATTAGTTCTATAGGGTATCGAGTATTTCTAGGGCACAAACAATACTTCTTTTCTTCAGACGTAGGTGCGGGAAAGATGCAATGGTATGCATTTCACAAGGAACCAGCTAGTGGTGCTGATGCCCACAATGGTAAAAAGGAAAGGACCCCAACTTTATCCTGGGGAAAGGGTAATGTGACCTTGCTTGGAGATTCTGTCCATGGTATGCAGCCAAATTTGGGTCAAGAGGGATGCATGGCCATTGAGGATGGTTATCAACTTGCGTTGGAGCTCGAAAAAGCTTTGAAGAAAAGCAGTGAAATGGGAACTCCTCCTGACATTGCTGCTTCTTTAAGAAGCTATGAGACATCTAGAAAGTTGCGGGTTGCCATTATTCATGGAATGGCTAGAATGGCTGCAATTATGGCTTCAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009266 GO:0009314 GO:0009408 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009526 GO:0009536 GO:0009540 GO:0009628 GO:0009639 GO:0009687 GO:0009688 GO:0009743 GO:0009756 GO:0009941 GO:0009987 GO:0010033 GO:0010035 GO:0010114 GO:0010182 GO:0016053 GO:0016106 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016122 GO:0016123 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0019752 GO:0023052 GO:0030104 GO:0031967 GO:0031975 GO:0032501 GO:0032787 GO:0042221 GO:0042440 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043289 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046148 GO:0046165 GO:0046394 GO:0048871 GO:0048878 GO:0050789 GO:0050794 GO:0050878 GO:0050891 GO:0050896 GO:0051716 GO:0052662 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071322 GO:0071704 GO:0072330 GO:1901576 GO:1901615 GO:1901617 GO:1901700 GO:1901701 GO:1902644 GO:1902645

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

FAD_binding_3 FHA NAD_binding_8

Protein Analysis

174

Amino Acids

19.02

Weight (kDa)

8.83

Isoelectric Point (pI)

31.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002983)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67030 AT5G67030
fragaria_vesca	FvH4_1g16080 FvH4_1g16080 FvH4_1g16080 FvH4_1g16080 FvH4_1g16080
malus_domestica	MD02G1172400.v1.1 MD15G1284500.v1.1
prunus_persica	Prupe.7G133100_v2.0.a1 Prupe.7G133100_v2.0.a1
pyrus_communis	pycom02g13890 pycom15g24720
rosa_chinensis	RchiOBHm_Chr2g0105701 RchiOBHm_Chr2g0138261 RchiOBHm_Chr5g0062971 RchiOBHm_Chr5g0062981
rosa_laevigata	RLG00000006425 RLG00000017450
rosa_multiflora	Rmu_sc0001051.1_g000057
rosa_roxburghii	Rroxscaffold_2G00137970 Rroxscaffold_2G00137980
rosa_rugosa	Rorug02G0129300 Rorug02G0129400 Rorug02G0129500 Rorug02G0129600
rosa_samantha	Rh2AG181000 Rh2BG190100 Rh2CG185200 Rh2DG187000 Rh4DG142500 Rh7AG320600 Rh7AG325500 Rh7BG187500 Rh7CG337400 Rh7CG342700
rosa_wichuraiana	Rw2G014150 Rw2G041180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	218
AciI	CCGC	2 cut(s)	176, 469
AcoI	YGGCCR	1 cut(s)	345
AcsI	RAATTY	2 cut(s)	91, 322
AcuI	CTGAAG	1 cut(s)	147
AfiI	CCNNNNNNNGG	2 cut(s)	218, 326
AgsI	TTSAA	3 cut(s)	40, 394, 519
AjnI	CCWGG	1 cut(s)	266
AluBI	AGCT	4 cut(s)	215, 379, 389, 447
AluI	AGCT	4 cut(s)	215, 379, 389, 447
Alw21I	GWGCWC	1 cut(s)	381
Alw26I	GTCTC	1 cut(s)	446
AoxI	GGCC	1 cut(s)	345
ApeKI	GCWGC	4 cut(s)	13, 316, 431, 503
ApoI	RAATTY	2 cut(s)	91, 322
AspS9I	GGNCC	1 cut(s)	252
AvaII	GGWCC	1 cut(s)	252
BaeGI	GKGCMC	1 cut(s)	144
BalI	TGGCCA	1 cut(s)	347
BanII	GRGCYC	1 cut(s)	381
Bbv12I	GWGCWC	1 cut(s)	381
BbvI	GCAGC	3 cut(s)	328, 418, 490
BccI	CCATC	1 cut(s)	350
BciT130I	CCWGG	1 cut(s)	268
BcoDI	GTCTC	1 cut(s)	446
BfaI	CTAG	4 cut(s)	137, 216, 459, 495
BfmI	CTRYAG	1 cut(s)	117
BisI	GCNGC	4 cut(s)	14, 317, 432, 504
BlsI	GCNGC	4 cut(s)	15, 318, 433, 505
Bme1390I	CCNGG	1 cut(s)	268
Bme18I	GGWCC	1 cut(s)	252
BmgT120I	GGNCC	1 cut(s)	252
BmiI	GGNNCC	2 cut(s)	210, 254
BmrFI	CCNGG	1 cut(s)	268
BmsI	GCATC	3 cut(s)	174, 217, 329
BsaBI	GATNNNNATC	1 cut(s)	360
BsaJI	CCNNGG	2 cut(s)	267, 307
BsaXI	ACNNNNNCTCC	2 cut(s)	288, 318
Bsc4I	CCNNNNNNNGG	2 cut(s)	218, 326
Bse1I	ACTGG	1 cut(s)	85
Bse3DI	GCAATG	2 cut(s)	194, 426
Bse8I	GATNNNNATC	1 cut(s)	360
BseBI	CCWGG	1 cut(s)	268
BseDI	CCNNGG	2 cut(s)	267, 307
BseGI	GGATG	3 cut(s)	33, 344, 361
BseJI	GATNNNNATC	1 cut(s)	360
BseLI	CCNNNNNNNGG	2 cut(s)	218, 326
BseMI	GCAATG	2 cut(s)	194, 426
BseNI	ACTGG	1 cut(s)	85
BseRI	GAGGAG	1 cut(s)	408
BseSI	GKGCMC	1 cut(s)	144
BseXI	GCAGC	3 cut(s)	328, 418, 490
BshFI	GGCC	1 cut(s)	347
BsiHKAI	GWGCWC	1 cut(s)	381
BslI	CCNNNNNNNGG	2 cut(s)	218, 326
BsmAI	GTCTC	1 cut(s)	446
BsnI	GGCC	1 cut(s)	347
Bsp1286I	GDGCHC	2 cut(s)	144, 381
Bsp19I	CCATGG	1 cut(s)	307
BspACI	CCGC	2 cut(s)	176, 469
BspANI	GGCC	1 cut(s)	347
BspLI	GGNNCC	2 cut(s)	210, 254
BsrDI	GCAATG	2 cut(s)	194, 426
BsrI	ACTGG	1 cut(s)	85
BssECI	CCNNGG	2 cut(s)	267, 307
BssT1I	CCWWGG	1 cut(s)	307
Bst2UI	CCWGG	1 cut(s)	268
BstC8I	GCNNGC	1 cut(s)	102
BstDSI	CCRYGG	1 cut(s)	307
BstF5I	GGATG	3 cut(s)	33, 344, 361
BstMAI	GTCTC	1 cut(s)	446
BstMWI	GCNNNNNNNGC	3 cut(s)	221, 500, 512
BstNI	CCWGG	1 cut(s)	268
BstSCI	CCNGG	1 cut(s)	266
BstSFI	CTRYAG	1 cut(s)	117
BstSLI	GKGCMC	1 cut(s)	144
BstV1I	GCAGC	3 cut(s)	328, 418, 490
BsuRI	GGCC	1 cut(s)	347
BtgI	CCRYGG	1 cut(s)	307
BtsCI	GGATG	3 cut(s)	33, 344, 361
BtsI	GCAGTG	1 cut(s)	409
BtsIMutI	CAGTG	2 cut(s)	17, 409
Cac8I	GCNNGC	1 cut(s)	102
Cfr13I	GGNCC	1 cut(s)	252
CviAII	CATG	3 cut(s)	308, 343, 485
EaeI	YGGCCR	1 cut(s)	345
Ecl136II	GAGCTC	1 cut(s)	379
Eco130I	CCWWGG	1 cut(s)	307
Eco24I	GRGCYC	1 cut(s)	381
Eco47I	GGWCC	1 cut(s)	252
Eco53kI	GAGCTC	1 cut(s)	379
Eco57I	CTGAAG	1 cut(s)	147
EcoICRI	GAGCTC	1 cut(s)	379
EcoO109I	RGGNCCY	1 cut(s)	252
EcoRII	CCWGG	1 cut(s)	266
EcoT14I	CCWWGG	1 cut(s)	307
EcoT22I	ATGCAT	2 cut(s)	199, 344
EcoT38I	GRGCYC	1 cut(s)	381
ErhI	CCWWGG	1 cut(s)	307
FaeI	CATG	3 cut(s)	311, 346, 488
FatI	CATG	3 cut(s)	307, 342, 484
FauI	CCCGC	2 cut(s)	169, 462
Fnu4HI	GCNGC	4 cut(s)	14, 317, 432, 504
FokI	GGATG	3 cut(s)	40, 351, 368
FriOI	GRGCYC	1 cut(s)	381
Fsp4HI	GCNGC	4 cut(s)	14, 317, 432, 504
FspBI	CTAG	4 cut(s)	137, 216, 459, 495
GluI	GCNGC	4 cut(s)	14, 317, 432, 504
HaeIII	GGCC	1 cut(s)	347
Hin1II	CATG	3 cut(s)	311, 346, 488
HindIII	AAGCTT	1 cut(s)	387
HinfI	GANTC	3 cut(s)	22, 40, 299
Hpy188I	TCNGA	3 cut(s)	27, 45, 166
Hpy188III	TCNNGA	3 cut(s)	332, 422, 459
HpyAV	CCTTC	1 cut(s)	40
HpyCH4IV	ACGT	1 cut(s)	168
HpyCH4V	TGCA	5 cut(s)	187, 197, 316, 342, 506
HpyF10VI	GCNNNNNNNGC	3 cut(s)	221, 500, 512
HpySE526I	ACGT	1 cut(s)	168
Hsp92II	CATG	3 cut(s)	311, 346, 488
LmnI	GCTCC	1 cut(s)	376
LpnPI	CCDG	6 cut(s)	66, 114, 225, 253, 280, 435
Lsp1109I	GCAGC	3 cut(s)	328, 418, 490
LweI	GCATC	3 cut(s)	174, 217, 329
MaeI	CTAG	4 cut(s)	137, 216, 459, 495
MaeII	ACGT	1 cut(s)	168
MaeIII	GTNAC	1 cut(s)	283
MboII	GAAGA	2 cut(s)	153, 406
MhlI	GDGCHC	2 cut(s)	144, 381
MlsI	TGGCCA	1 cut(s)	347
MluCI	AATT	3 cut(s)	91, 322, 507
MluNI	TGGCCA	1 cut(s)	347
MmeI	TCCRAC	1 cut(s)	354
MnlI	CCTC	4 cut(s)	43, 328, 346, 429
Mox20I	TGGCCA	1 cut(s)	347
Mph1103I	ATGCAT	2 cut(s)	199, 344
MscI	TGGCCA	1 cut(s)	347
MseI	TTAA	2 cut(s)	440, 523
Msp20I	TGGCCA	1 cut(s)	347
MspR9I	CCNGG	1 cut(s)	268
MvaI	CCWGG	1 cut(s)	268
MwoI	GCNNNNNNNGC	3 cut(s)	221, 500, 512
NcoI	CCATGG	1 cut(s)	307
NlaIII	CATG	3 cut(s)	311, 346, 488
NlaIV	GGNNCC	2 cut(s)	210, 254
NmuCI	GTSAC	1 cut(s)	283
NsiI	ATGCAT	2 cut(s)	199, 344
PfeI	GAWTC	3 cut(s)	22, 40, 299
PflMI	CCANNNNNTGG	1 cut(s)	218
PkrI	GCNGC	4 cut(s)	15, 318, 433, 505
PpuMI	RGGWCCY	1 cut(s)	252
Psp124BI	GAGCTC	1 cut(s)	381
Psp5II	RGGWCCY	1 cut(s)	252
Psp6I	CCWGG	1 cut(s)	266
PspGI	CCWGG	1 cut(s)	266
PspN4I	GGNNCC	2 cut(s)	210, 254
PspPI	GGNCC	1 cut(s)	252
PspPPI	RGGWCCY	1 cut(s)	252
SacI	GAGCTC	1 cut(s)	381
SaqAI	TTAA	2 cut(s)	440, 523
SatI	GCNGC	4 cut(s)	14, 317, 432, 504
Sau96I	GGNCC	1 cut(s)	252
ScrFI	CCNGG	1 cut(s)	268
SduI	GDGCHC	2 cut(s)	144, 381
SetI	ASST	7 cut(s)	171, 175, 217, 290, 381, 391, 449
SfaNI	GCATC	3 cut(s)	174, 217, 329
SfcI	CTRYAG	1 cut(s)	117
SinI	GGWCC	1 cut(s)	252
Sse9I	AATT	3 cut(s)	91, 322, 507
SsiI	CCGC	2 cut(s)	176, 469
SspMI	CTAG	4 cut(s)	137, 216, 459, 495
SstI	GAGCTC	1 cut(s)	381
StyD4I	CCNGG	1 cut(s)	266
StyI	CCWWGG	1 cut(s)	307
TaiI	ACGT	1 cut(s)	171
TaqI	TCGA	2 cut(s)	127, 381
TasI	AATT	3 cut(s)	91, 322, 507
TfiI	GAWTC	3 cut(s)	22, 40, 299
Tru1I	TTAA	2 cut(s)	440, 523
Tru9I	TTAA	2 cut(s)	440, 523
TscAI	CASTG	2 cut(s)	24, 409
TseFI	GTSAC	1 cut(s)	283
TseI	GCWGC	4 cut(s)	13, 316, 431, 503
Tsp45I	GTSAC	1 cut(s)	283
TspDTI	ATGAA	1 cut(s)	473
TspRI	CASTG	2 cut(s)	24, 409
Van91I	CCANNNNNTGG	1 cut(s)	218
VpaK11BI	GGWCC	1 cut(s)	252
XapI	RAATTY	2 cut(s)	91, 322
XbaI	TCTAGA	1 cut(s)	458
XcmI	CCANNNNNNNNNTGG	1 cut(s)	264
XspI	CTAG	4 cut(s)	137, 216, 459, 495
Zsp2I	ATGCAT	2 cut(s)	199, 344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.