Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0002983

Physical Location & Seq

Genomic Coordinates Reverse (-)

25782520 .. 25787322

Gene Structure 4803 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1284500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1998 bp

ATGGCTTCCGCTGTTTTCTGCAACTCCATGAACCCATCGGCGGTAGTTTTCTCAAGATCCCACCTACCGTGTCCCGCCAACAAAGACTTCCCACTTGTATTTTCCCCATATTTTCACTACAACTGCCATTTGAGAAGCAGAGCAAGAACTGGGAATAAGAAGTGTTTGACTGAGGTGAGAGCTGCGACGGCGGCGCCACCCGAAGAGGCCTCCACTAGTGCGCCCGCACCGACCCAGCAGAAGAAGAACCTTAGAATTCTGGTTGCTGGCGGTGGAATCGGAGGGCTGGTTTTTGCTCTGGCGGCGAAAAAGAAGGGATTTGATGTGGTGGTGTTTGAGAAGGATTTGAGTGCTGTGAGAGGAGAGGGGCAGTACAGAGGTCCTATTCAGATACAGAGTAATGCGTTGGCGGCGTTGGAAGCCATTGATGTGGATGTTGCTGAGGAGGTTATGACGGTTGGTTGTGTTACTGGGGATAGGATCAATGGACTCGTTGATGGGGTTTCTGGTACTTGGTATGTCAAGTTTGATACATTCACTCCTGCAGTGGAACGGGGGCTTCCAGTTACAAGAGTTATAAGCCGAATGACATTGCAACAAATACTTGCTCGTGCTGTCGGGGACGATATTATTATAAATGGTAGTAATGTTGTTAACTTTGAGGATGTTGGAGATAAGGTCAATGTGATACTTGAGAATGGTGAGCGTTTTGAAGGCGATGTTCTGGTTGGGGCCGATGGTATATGGTCAAAGGTGAGGAAGAACTTGTTTGGATTAACGGACGCTGTTTACTCTGGTTACACTTGTTATACTGGTATCGCAGATTTTGTGCCTGCTGACATAAATTCTGTAGGGTACCGCGTATTCTTGGGGCACAAACAATACTTTGTTTCTTCAGATGTCGGTGCAGGAAAGATGCAGTGGTATGCATTTCACAAGGAAGCACCTGGTGGTGTTGATAGGCCCAATGGTAAAAAGGAAAGGCTGCTCAAAATATTTGAGGGCTGGTGTGATAATGTGATAGATTTGTTACTTACCACAGAGGAAGATGCAATTCTACGACGAGACATATATGATAGGACACCCATCCTAACCTGGGGAAAGGGTCGTGTAACCTTGCTTGGCGATTCTGTTCATGCTATGCAGCCAAATATGGGTCAAGGGGGATGCATGGCCATTGAGGACGGTTATCAACTTGCCATGGAGCTTGATAAAGCATGGCAGAAAAGTAGCGAATCGGGAACTCCTATTGACATTAATTCTTCTTTGAGAAGCTATGAGAATTCTAGAAGACTGCGGGTTGCCATTATTCATGGAATGGCCAGAATGGCTGCACTAATGGCTTCCACTTACAAGGCTTATCTGGGAGTGGGACTTGGTCCTTTGTCGTTTTTGACCAAGTTTCGGATACCACATCCGGGAAGAGTTGGTGGGAGGGTTTTTATTGATAAGGCAATGCCCTTGATGCTGAGCTGGGTCTTAGGTGGTAACAGCTCAAAACTTGAAGGAAGGTCACCCAGTTGCAGGCTCTCAGATAAAGCAAGTGACCAGTTACGAACATGGTTTGAAGACGATGATGCACTGGAGTGTGCTATTGACGGAGAGTGGTATCTTATACCTTGTGGGCAAGACAATGATGCTTCGCAACTTATTTGTTTGAATAGAGATGAGAAAACATCCTGCATAATCGGGAGGAGCGTACCACATGGGGATGCTTCTGGAACATCAATAACAATACGCTCGCCCCAGGTCTCGGATATGCACGCTCGTATCAGCTACAAGGATGGTGCCTTCTACGTGACTGATTTGCAAAGTGAATATGGTACCTGGATTGCTGATATTGAGGAGAAGCGATACCGAGTACCCCCAAATTCCCCTGCTCGTTTACATCCTTCCGATGCTATTGAGATTGGTTCCCAGAAGGTGGCGTTCAGGGTTAAAGTTATGAAGTCTTCTCCGAAGAGTGCCGAGAAGGAAGGAGTTCTTCAAGCTGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009266 GO:0009314 GO:0009408 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009526 GO:0009536 GO:0009540 GO:0009628 GO:0009639 GO:0009687 GO:0009688 GO:0009743 GO:0009756 GO:0009941 GO:0009987 GO:0010033 GO:0010035 GO:0010114 GO:0010182 GO:0016053 GO:0016106 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016122 GO:0016123 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0019752 GO:0023052 GO:0030104 GO:0031967 GO:0031975 GO:0032501 GO:0032787 GO:0042221 GO:0042440 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043289 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046148 GO:0046165 GO:0046394 GO:0048871 GO:0048878 GO:0050789 GO:0050794 GO:0050878 GO:0050891 GO:0050896 GO:0051716 GO:0052662 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071322 GO:0071704 GO:0072330 GO:1901576 GO:1901615 GO:1901617 GO:1901700 GO:1901701 GO:1902644 GO:1902645

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

FAD_binding_3 FHA NAD_binding_8

Protein Analysis

666

Amino Acids

72.66

Weight (kDa)

6.84

Isoelectric Point (pI)

42.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAD_binding_3	PF01494	365 - 408	3.8e-07	FAD binding domain
FHA	PF00498	562 - 638	1.4e-12	FHA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002983)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67030 AT5G67030
fragaria_vesca	FvH4_1g16080 FvH4_1g16080 FvH4_1g16080 FvH4_1g16080 FvH4_1g16080
malus_domestica	MD02G1172400.v1.1 MD15G1284500.v1.1
prunus_persica	Prupe.7G133100_v2.0.a1 Prupe.7G133100_v2.0.a1
pyrus_communis	pycom02g13890 pycom15g24720
rosa_chinensis	RchiOBHm_Chr2g0105701 RchiOBHm_Chr2g0138261 RchiOBHm_Chr5g0062971 RchiOBHm_Chr5g0062981
rosa_laevigata	RLG00000006425 RLG00000017450
rosa_multiflora	Rmu_sc0001051.1_g000057
rosa_roxburghii	Rroxscaffold_2G00137970 Rroxscaffold_2G00137980
rosa_rugosa	Rorug02G0129300 Rorug02G0129400 Rorug02G0129500 Rorug02G0129600
rosa_samantha	Rh2AG181000 Rh2BG190100 Rh2CG185200 Rh2DG187000 Rh4DG142500 Rh7AG320600 Rh7AG325500 Rh7BG187500 Rh7CG337400 Rh7CG342700
rosa_wichuraiana	Rw2G014150 Rw2G041180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	578, 635
Acc65I	GGTACC	2 cut(s)	855, 1823
AccB1I	GGYRCC	4 cut(s)	193, 855, 1787, 1823
AccB7I	CCANNNNNTGG	1 cut(s)	1924
AccII	CGCG	1 cut(s)	861
AclWI	GGATC	2 cut(s)	51, 488
AcoI	YGGCCR	2 cut(s)	1173, 1320
AcsI	RAATTY	4 cut(s)	255, 844, 1282, 1870
AcuI	CTGAAG	1 cut(s)	879
AcyI	GRCGYC	1 cut(s)	194
AdeI	CACNNNGTG	1 cut(s)	950
AfaI	GTAC	6 cut(s)	374, 511, 857, 1701, 1825, 1863
AfiI	CCNNNNNNNGG	8 cut(s)	40, 1096, 1154, 1404, 1418, 1524, 1753, 1924
AgsI	TTSAA	5 cut(s)	713, 1505, 1568, 1660, 1988
AhlI	ACTAGT	1 cut(s)	215
AjnI	CCWGG	4 cut(s)	946, 1094, 1746, 1826
AjuI	GAANNNNNNNTTGG	2 cut(s)	71, 103
AleI	CACNNNNGTG	1 cut(s)	1585
AluBI	AGCT	7 cut(s)	182, 1207, 1275, 1473, 1494, 1776, 1991
AluI	AGCT	7 cut(s)	182, 1207, 1275, 1473, 1494, 1776, 1991
Alw26I	GTCTC	2 cut(s)	1059, 1756
AlwI	GGATC	2 cut(s)	51, 488
AoxI	GGCC	5 cut(s)	207, 732, 962, 1173, 1320
ApeKI	GCWGC	5 cut(s)	182, 985, 1144, 1331, 1991
ApoI	RAATTY	4 cut(s)	255, 844, 1282, 1870
AseI	ATTAAT	1 cut(s)	1257
Asp700I	GAANNNNTTC	1 cut(s)	1980
Asp718I	GGTACC	2 cut(s)	855, 1823
AspLEI	GCGC	2 cut(s)	196, 223
AspS9I	GGNCC	4 cut(s)	380, 732, 963, 1379
AsuC2I	CCSGG	1 cut(s)	1419
AsuHPI	GGTGA	4 cut(s)	187, 713, 766, 1506
AvaII	GGWCC	2 cut(s)	380, 1379
BaeGI	GKGCMC	1 cut(s)	876
BaeI	ACNNNNGTAYC	2 cut(s)	1753, 1786
BalI	TGGCCA	2 cut(s)	1175, 1322
BanI	GGYRCC	4 cut(s)	193, 855, 1787, 1823
BauI	CACGAG	1 cut(s)	609
BbsI	GAAGAC	3 cut(s)	1297, 1575, 1944
BbvCI	CCTCAGC	1 cut(s)	441
BbvI	GCAGC	5 cut(s)	169, 972, 1156, 1318, 1978
BccI	CCATC	5 cut(s)	43, 491, 731, 1094, 1778
BceAI	ACGGC	1 cut(s)	204
BciT130I	CCWGG	4 cut(s)	948, 1096, 1748, 1828
BciVI	GTATCC	1 cut(s)	1401
BcnI	CCSGG	1 cut(s)	1419
BcoDI	GTCTC	2 cut(s)	1059, 1756
BcuI	ACTAGT	1 cut(s)	215
BfaI	CTAG	2 cut(s)	216, 1287
BfmI	CTRYAG	2 cut(s)	543, 849
BfoI	RGCGCY	1 cut(s)	197
BfuI	GTATCC	1 cut(s)	1401
BglI	GCCNNNNNGGC	1 cut(s)	1328
BisI	GCNGC	8 cut(s)	183, 192, 303, 411, 986, 1145, 1332, 1992
BlpI	GCTNAGC	1 cut(s)	1469
BlsI	GCNGC	8 cut(s)	184, 193, 304, 412, 987, 1146, 1333, 1993
Bme1390I	CCNGG	5 cut(s)	948, 1096, 1419, 1748, 1828
Bme18I	GGWCC	2 cut(s)	380, 1379
BmgT120I	GGNCC	4 cut(s)	380, 732, 963, 1379
BmiI	GGNNCC	6 cut(s)	195, 733, 857, 1789, 1825, 1915
BmrFI	CCNGG	5 cut(s)	948, 1096, 1419, 1748, 1828
BmrI	ACTGGG	3 cut(s)	159, 480, 1512
BmsI	GCATC	8 cut(s)	906, 1039, 1157, 1455, 1567, 1627, 1702, 1888
BmuI	ACTGGG	3 cut(s)	159, 480, 1512
BpiI	GAAGAC	3 cut(s)	1297, 1575, 1944
BpmI	CTGGAG	1 cut(s)	1604
Bpu10I	CCTNAGC	1 cut(s)	441
Bpu1102I	GCTNAGC	1 cut(s)	1469
BpuEI	CTTGAG	2 cut(s)	37, 713
BpuMI	CCSGG	1 cut(s)	1419
BsaAI	YACGTR	1 cut(s)	1798
BsaHI	GRCGYC	1 cut(s)	194
BsaI	GGTCTC	1 cut(s)	1756
BsaJI	CCNNGG	3 cut(s)	1095, 1200, 1746
BsaXI	ACNNNNNCTCC	6 cut(s)	273, 303, 523, 553, 663, 693
Bsc4I	CCNNNNNNNGG	8 cut(s)	40, 1096, 1154, 1404, 1418, 1524, 1753, 1924
Bse1I	ACTGG	7 cut(s)	154, 475, 563, 817, 1518, 1549, 1587
Bse3DI	GCAATG	2 cut(s)	590, 1461
BseBI	CCWGG	4 cut(s)	948, 1096, 1748, 1828
BseDI	CCNNGG	3 cut(s)	1095, 1200, 1746
BseGI	GGATG	9 cut(s)	439, 670, 1086, 1172, 1414, 1676, 1717, 1789, 1888
BseLI	CCNNNNNNNGG	8 cut(s)	40, 1096, 1154, 1404, 1418, 1524, 1753, 1924
BseMI	GCAATG	2 cut(s)	590, 1461
BseMII	CTCAG	4 cut(s)	162, 432, 1460, 1545
BseNI	ACTGG	7 cut(s)	154, 475, 563, 817, 1518, 1549, 1587
BseRI	GAGGAG	4 cut(s)	375, 458, 1708, 1859
BseSI	GKGCMC	1 cut(s)	876
BseXI	GCAGC	5 cut(s)	169, 972, 1156, 1318, 1978
BseYI	CCCAGC	2 cut(s)	234, 1473
BsgI	GTGCAG	2 cut(s)	927, 1317
Bsh1236I	CGCG	1 cut(s)	861
BshFI	GGCC	5 cut(s)	209, 734, 964, 1175, 1322
BshNI	GGYRCC	4 cut(s)	193, 855, 1787, 1823
BsiSI	CCGG	1 cut(s)	1418
BslFI	GGGAC	3 cut(s)	57, 635, 1386
BslI	CCNNNNNNNGG	8 cut(s)	40, 1096, 1154, 1404, 1418, 1524, 1753, 1924
BsmAI	GTCTC	2 cut(s)	1059, 1756
BsmFI	GGGAC	3 cut(s)	57, 635, 1386
BsnI	GGCC	5 cut(s)	209, 734, 964, 1175, 1322
Bso31I	GGTCTC	1 cut(s)	1756
Bsp1286I	GDGCHC	1 cut(s)	876
Bsp143I	GATC	2 cut(s)	56, 480
Bsp1720I	GCTNAGC	1 cut(s)	1469
Bsp19I	CCATGG	1 cut(s)	1200
BspANI	GGCC	5 cut(s)	209, 734, 964, 1175, 1322
BspCNI	CTCAG	4 cut(s)	163, 433, 1461, 1544
BspFNI	CGCG	1 cut(s)	861
BspLI	GGNNCC	6 cut(s)	195, 733, 857, 1789, 1825, 1915
BspMAI	CTGCAG	1 cut(s)	547
BspPI	GGATC	2 cut(s)	51, 488
BspT107I	GGYRCC	4 cut(s)	193, 855, 1787, 1823
BspTNI	GGTCTC	1 cut(s)	1756
BsrDI	GCAATG	2 cut(s)	590, 1461
BsrI	ACTGG	7 cut(s)	154, 475, 563, 817, 1518, 1549, 1587
BssECI	CCNNGG	3 cut(s)	1095, 1200, 1746
BssMI	GATC	2 cut(s)	56, 480
BssNI	GRCGYC	1 cut(s)	194
BssSI	CACGAG	1 cut(s)	609
BssT1I	CCWWGG	1 cut(s)	1200
Bst2BI	CACGAG	1 cut(s)	609
Bst2UI	CCWGG	4 cut(s)	948, 1096, 1748, 1828
Bst4CI	ACNGT	3 cut(s)	69, 457, 1187
Bst6I	CTCTTC	3 cut(s)	198, 1417, 1955
BstACI	GRCGYC	1 cut(s)	194
BstBAI	YACGTR	1 cut(s)	1798
BstC8I	GCNNGC	6 cut(s)	225, 268, 834, 1526, 1742, 1764
BstDEI	CTNAG	6 cut(s)	171, 251, 441, 1469, 1480, 1531
BstDSI	CCRYGG	1 cut(s)	1200
BstEII	GGTNACC	1 cut(s)	1512
BstF5I	GGATG	9 cut(s)	439, 670, 1086, 1172, 1414, 1676, 1717, 1789, 1888
BstFNI	CGCG	1 cut(s)	861
BstH2I	RGCGCY	1 cut(s)	197
BstHHI	GCGC	2 cut(s)	196, 223
BstKTI	GATC	2 cut(s)	59, 483
BstMAI	GTCTC	2 cut(s)	1059, 1756
BstMBI	GATC	2 cut(s)	56, 480
BstMWI	GCNNNNNNNGC	8 cut(s)	188, 191, 302, 410, 419, 1328, 1340, 1465
BstNI	CCWGG	4 cut(s)	948, 1096, 1748, 1828
BstPI	GGTNACC	1 cut(s)	1512
BstSCI	CCNGG	5 cut(s)	946, 1094, 1417, 1746, 1826
BstSFI	CTRYAG	2 cut(s)	543, 849
BstSLI	GKGCMC	1 cut(s)	876
BstUI	CGCG	1 cut(s)	861
BstV1I	GCAGC	5 cut(s)	169, 972, 1156, 1318, 1978
BstV2I	GAAGAC	3 cut(s)	1297, 1575, 1944
BstX2I	RGATCY	1 cut(s)	56
BstXI	CCANNNNNNTGG	1 cut(s)	430
BstYI	RGATCY	1 cut(s)	56
BsuI	GTATCC	1 cut(s)	1401
BsuRI	GGCC	5 cut(s)	209, 734, 964, 1175, 1322
BtgI	CCRYGG	1 cut(s)	1200
BtgZI	GCGATG	1 cut(s)	732
BtsCI	GGATG	9 cut(s)	439, 670, 1086, 1172, 1414, 1676, 1717, 1789, 1888
BtsI	GCAGTG	2 cut(s)	552, 926
BtsIMutI	CAGTG	3 cut(s)	552, 926, 1580
Cac8I	GCNNGC	6 cut(s)	225, 268, 834, 1526, 1742, 1764
CfoI	GCGC	2 cut(s)	196, 223
Cfr13I	GGNCC	4 cut(s)	380, 732, 963, 1379
CseI	GACGC	1 cut(s)	791
CsiI	ACCWGGT	1 cut(s)	946
Csp6I	GTAC	6 cut(s)	373, 510, 856, 1700, 1824, 1862
CviAII	CATG	8 cut(s)	28, 1136, 1171, 1201, 1218, 1313, 1560, 1706
CviQI	GTAC	6 cut(s)	373, 510, 856, 1700, 1824, 1862
DdeI	CTNAG	6 cut(s)	171, 251, 441, 1469, 1480, 1531
DinI	GGCGCC	1 cut(s)	195
DpnI	GATC	2 cut(s)	58, 482
DpnII	GATC	2 cut(s)	56, 480
DraIII	CACNNNGTG	1 cut(s)	950
EaeI	YGGCCR	2 cut(s)	1173, 1320
Eam1104I	CTCTTC	3 cut(s)	198, 1417, 1955
EarI	CTCTTC	3 cut(s)	198, 1417, 1955
Eco130I	CCWWGG	1 cut(s)	1200
Eco147I	AGGCCT	1 cut(s)	209
Eco31I	GGTCTC	1 cut(s)	1756
Eco47I	GGWCC	2 cut(s)	380, 1379
Eco57I	CTGAAG	1 cut(s)	879
Eco91I	GGTNACC	1 cut(s)	1512
EcoO109I	RGGNCCY	1 cut(s)	380
EcoO65I	GGTNACC	1 cut(s)	1512
EcoRI	GAATTC	2 cut(s)	255, 1282
EcoRII	CCWGG	4 cut(s)	946, 1094, 1746, 1826
EcoT14I	CCWWGG	1 cut(s)	1200
EcoT22I	ATGCAT	2 cut(s)	931, 1172
EgeI	GGCGCC	1 cut(s)	195
EheI	GGCGCC	1 cut(s)	195
ErhI	CCWWGG	1 cut(s)	1200
FaeI	CATG	8 cut(s)	31, 1139, 1174, 1204, 1221, 1316, 1563, 1709
FalI	AAGNNNNNCTT	1 cut(s)	1968
FaqI	GGGAC	3 cut(s)	57, 635, 1386
FatI	CATG	8 cut(s)	27, 1135, 1170, 1200, 1217, 1312, 1559, 1705
FauI	CCCGC	3 cut(s)	82, 232, 1290
Fnu4HI	GCNGC	8 cut(s)	183, 192, 303, 411, 986, 1145, 1332, 1992
FokI	GGATG	9 cut(s)	446, 677, 1073, 1179, 1401, 1663, 1724, 1796, 1875
Fsp4HI	GCNGC	8 cut(s)	183, 192, 303, 411, 986, 1145, 1332, 1992
FspBI	CTAG	2 cut(s)	216, 1287
GlaI	GCGC	2 cut(s)	195, 222
GluI	GCNGC	8 cut(s)	183, 192, 303, 411, 986, 1145, 1332, 1992
GsaI	CCCAGC	2 cut(s)	238, 1477
GsuI	CTGGAG	1 cut(s)	1604
HaeII	RGCGCY	1 cut(s)	197
HaeIII	GGCC	5 cut(s)	209, 734, 964, 1175, 1322
HapII	CCGG	1 cut(s)	1418
HgaI	GACGC	1 cut(s)	791
HhaI	GCGC	2 cut(s)	196, 223
Hin1I	GRCGYC	1 cut(s)	194
Hin1II	CATG	8 cut(s)	31, 1139, 1174, 1204, 1221, 1316, 1563, 1709
Hin6I	GCGC	2 cut(s)	194, 221
HinP1I	GCGC	2 cut(s)	194, 221
HincII	GTYRAC	1 cut(s)	655
HindII	GTYRAC	1 cut(s)	655
HinfI	GANTC	4 cut(s)	276, 489, 1127, 1235
HpaI	GTTAAC	1 cut(s)	655
HpaII	CCGG	1 cut(s)	1418
HphI	GGTGA	4 cut(s)	187, 713, 766, 1506
Hpy166II	GTNNAC	3 cut(s)	655, 790, 1886
Hpy188I	TCNGA	8 cut(s)	281, 390, 898, 1407, 1534, 1756, 1897, 1959
Hpy188III	TCNNGA	5 cut(s)	54, 1239, 1287, 1690, 1719
Hpy8I	GTNNAC	3 cut(s)	655, 790, 1886
Hpy99I	CGWCG	2 cut(s)	190, 1065
HpyCH4III	ACNGT	3 cut(s)	69, 457, 1187
HpyCH4IV	ACGT	1 cut(s)	1797
HpyF10VI	GCNNNNNNNGC	8 cut(s)	188, 191, 302, 410, 419, 1328, 1340, 1465
HpyF3I	CTNAG	6 cut(s)	171, 251, 441, 1469, 1480, 1531
HpySE526I	ACGT	1 cut(s)	1797
Hsp92I	GRCGYC	1 cut(s)	194
Hsp92II	CATG	8 cut(s)	31, 1139, 1174, 1204, 1221, 1316, 1563, 1709
HspAI	GCGC	2 cut(s)	194, 221
KasI	GGCGCC	1 cut(s)	193
KpnI	GGTACC	2 cut(s)	859, 1827
KspAI	GTTAAC	1 cut(s)	655
Kzo9I	GATC	2 cut(s)	56, 480
LmnI	GCTCC	2 cut(s)	1204, 1695
Lsp1109I	GCAGC	5 cut(s)	169, 972, 1156, 1318, 1978
LweI	GCATC	8 cut(s)	906, 1039, 1157, 1455, 1567, 1627, 1702, 1888
MabI	ACCWGGT	1 cut(s)	946
MaeI	CTAG	2 cut(s)	216, 1287
MaeII	ACGT	1 cut(s)	1797
MalI	GATC	2 cut(s)	58, 482
MboI	GATC	2 cut(s)	56, 480
MflI	RGATCY	1 cut(s)	56
MhlI	GDGCHC	1 cut(s)	876
MlsI	TGGCCA	2 cut(s)	1175, 1322
MluCI	AATT	6 cut(s)	255, 844, 1053, 1258, 1282, 1870
MluNI	TGGCCA	2 cut(s)	1175, 1322
Mly113I	GGCGCC	1 cut(s)	194
MlyI	GAGTC	1 cut(s)	483
MmeI	TCCRAC	2 cut(s)	396, 649
Mox20I	TGGCCA	2 cut(s)	1175, 1322
Mph1103I	ATGCAT	2 cut(s)	931, 1172
MroXI	GAANNNNTTC	1 cut(s)	1980
MscI	TGGCCA	2 cut(s)	1175, 1322
MseI	TTAA	4 cut(s)	654, 776, 1257, 1938
MslI	CAYNNNNRTG	3 cut(s)	428, 1585, 1710
Msp20I	TGGCCA	2 cut(s)	1175, 1322
MspA1I	CMGCKG	1 cut(s)	11
MspI	CCGG	1 cut(s)	1418
MspR9I	CCNGG	5 cut(s)	948, 1096, 1419, 1748, 1828
MvaI	CCWGG	4 cut(s)	948, 1096, 1748, 1828
MvnI	CGCG	1 cut(s)	861
MwoI	GCNNNNNNNGC	8 cut(s)	188, 191, 302, 410, 419, 1328, 1340, 1465
NarI	GGCGCC	1 cut(s)	194
NciI	CCSGG	1 cut(s)	1419
NcoI	CCATGG	1 cut(s)	1200
NdeII	GATC	2 cut(s)	56, 480
NlaIII	CATG	8 cut(s)	31, 1139, 1174, 1204, 1221, 1316, 1563, 1709
NlaIV	GGNNCC	6 cut(s)	195, 733, 857, 1789, 1825, 1915
NmeAIII	GCCGAG	1 cut(s)	1993
NmuCI	GTSAC	3 cut(s)	1512, 1544, 1798
NsiI	ATGCAT	2 cut(s)	931, 1172
OliI	CACNNNNGTG	1 cut(s)	1585
PceI	AGGCCT	1 cut(s)	209
PcsI	WCGNNNNNNNCGW	1 cut(s)	1695
PdmI	GAANNNNTTC	1 cut(s)	1980
PfeI	GAWTC	3 cut(s)	276, 1127, 1235
PflFI	GACNNNGTC	1 cut(s)	1377
PflMI	CCANNNNNTGG	1 cut(s)	1924
PfoI	TCCNGGA	1 cut(s)	1417
PkrI	GCNGC	8 cut(s)	184, 193, 304, 412, 987, 1146, 1333, 1993
PleI	GAGTC	1 cut(s)	483
PluTI	GGCGCC	1 cut(s)	197
PpsI	GAGTC	1 cut(s)	483
Ppu21I	YACGTR	1 cut(s)	1798
PpuMI	RGGWCCY	1 cut(s)	380
PshBI	ATTAAT	1 cut(s)	1257
PsiI	TTATAA	2 cut(s)	578, 635
Psp5II	RGGWCCY	1 cut(s)	380
Psp6I	CCWGG	4 cut(s)	946, 1094, 1746, 1826
PspEI	GGTNACC	1 cut(s)	1512
PspFI	CCCAGC	2 cut(s)	234, 1473
PspGI	CCWGG	4 cut(s)	946, 1094, 1746, 1826
PspN4I	GGNNCC	6 cut(s)	195, 733, 857, 1789, 1825, 1915
PspPI	GGNCC	4 cut(s)	380, 732, 963, 1379
PspPPI	RGGWCCY	1 cut(s)	380
PstI	CTGCAG	1 cut(s)	547
PsuI	RGATCY	1 cut(s)	56
PsyI	GACNNNGTC	1 cut(s)	1377
RsaI	GTAC	6 cut(s)	374, 511, 857, 1701, 1825, 1863
RsaNI	GTAC	6 cut(s)	373, 510, 856, 1700, 1824, 1862
RseI	CAYNNNNRTG	3 cut(s)	428, 1585, 1710
SaqAI	TTAA	4 cut(s)	654, 776, 1257, 1938
SatI	GCNGC	8 cut(s)	183, 192, 303, 411, 986, 1145, 1332, 1992
Sau3AI	GATC	2 cut(s)	56, 480
Sau96I	GGNCC	4 cut(s)	380, 732, 963, 1379
SchI	GAGTC	1 cut(s)	483
ScrFI	CCNGG	5 cut(s)	948, 1096, 1419, 1748, 1828
SduI	GDGCHC	1 cut(s)	876
SexAI	ACCWGGT	1 cut(s)	946
SfaNI	GCATC	8 cut(s)	906, 1039, 1157, 1455, 1567, 1627, 1702, 1888
SfcI	CTRYAG	2 cut(s)	543, 849
SfoI	GGCGCC	1 cut(s)	195
SinI	GGWCC	2 cut(s)	380, 1379
SmiMI	CAYNNNNRTG	3 cut(s)	428, 1585, 1710
SmlI	CTYRAG	2 cut(s)	52, 692
SmoI	CTYRAG	2 cut(s)	52, 692
SpeI	ACTAGT	1 cut(s)	215
Sse9I	AATT	6 cut(s)	255, 844, 1053, 1258, 1282, 1870
SseBI	AGGCCT	1 cut(s)	209
SspDI	GGCGCC	1 cut(s)	193
SspI	AATATT	1 cut(s)	996
SspMI	CTAG	2 cut(s)	216, 1287
StuI	AGGCCT	1 cut(s)	209
StyD4I	CCNGG	5 cut(s)	946, 1094, 1417, 1746, 1826
StyI	CCWWGG	1 cut(s)	1200
TaaI	ACNGT	3 cut(s)	69, 457, 1187
TaiI	ACGT	1 cut(s)	1800
TasI	AATT	6 cut(s)	255, 844, 1053, 1258, 1282, 1870
TatI	WGTACW	1 cut(s)	372
TauI	GCSGC	3 cut(s)	194, 305, 413
TfiI	GAWTC	3 cut(s)	276, 1127, 1235
Tru1I	TTAA	4 cut(s)	654, 776, 1257, 1938
Tru9I	TTAA	4 cut(s)	654, 776, 1257, 1938
TscAI	CASTG	3 cut(s)	552, 926, 1587
TseFI	GTSAC	3 cut(s)	1512, 1544, 1798
TseI	GCWGC	5 cut(s)	182, 985, 1144, 1331, 1991
Tsp45I	GTSAC	3 cut(s)	1512, 1544, 1798
TspDTI	ATGAA	4 cut(s)	44, 1124, 1301, 1961
TspGWI	ACGGA	2 cut(s)	794, 1614
TspRI	CASTG	3 cut(s)	552, 926, 1587
Tth111I	GACNNNGTC	1 cut(s)	1377
Van91I	CCANNNNNTGG	1 cut(s)	1924
VpaK11BI	GGWCC	2 cut(s)	380, 1379
VspI	ATTAAT	1 cut(s)	1257
XapI	RAATTY	4 cut(s)	255, 844, 1282, 1870
XbaI	TCTAGA	1 cut(s)	1286
XmnI	GAANNNNTTC	1 cut(s)	1980
XspI	CTAG	2 cut(s)	216, 1287
Zsp2I	ATGCAT	2 cut(s)	931, 1172

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.